genome.fa.s1928.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001928.1 Hibiscus syriacus cultivar Beakdansim tig00003899_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  89220

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4822--4882	30	2.0	30	87	6	88	14	22	31	31	1.94
4947--5029	33	2.5	34	94	5	152	15	25	22	36	1.94
5125--5168	23	1.9	23	100	0	88	9	25	40	25	1.84
5622--5980	173	2.1	173	93	1	612	39	4	18	37	1.71
7705--7746	18	2.3	18	76	15	50	23	4	54	16	1.61
8159--8211	23	2.3	23	96	0	97	49	5	5	39	1.50
8175--8290	37	3.1	37	78	9	146	50	5	5	39	1.47
8199--8290	14	7.3	14	71	22	87	50	5	4	40	1.45
8227--8299	23	3.1	23	98	2	137	46	4	4	45	1.41
9200--9290	36	2.6	36	91	8	145	36	28	27	7	1.84
9279--9374	26	3.7	26	92	0	165	31	31	26	11	1.91
10144--10224	39	2.1	39	100	0	162	24	22	9	43	1.83
11807--11858	27	1.9	27	100	0	104	48	11	15	25	1.78
13784--13862	12	7.0	11	72	15	54	64	0	2	32	1.07
13782--13845	22	2.8	23	75	20	71	60	0	3	35	1.12
13783--13864	22	4.0	20	71	21	53	63	0	2	34	1.08
16535--16571	17	2.2	17	90	0	56	48	0	13	37	1.43
20482--20520	11	3.5	11	85	0	51	56	15	10	17	1.66
21870--21910	22	1.9	22	90	5	66	60	2	9	26	1.40
29691--29824	63	2.1	64	87	5	189	34	8	4	52	1.53
30286--30346	24	2.7	23	80	7	70	50	0	1	47	1.10
31244--31309	28	2.4	28	94	0	123	34	27	10	27	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31258--31308	14	3.6	14	73	19	52	33	27	11	27	1.92
35966--36102	39	3.5	39	88	0	184	21	30	23	24	1.99
43628--43662	16	2.2	16	94	0	61	28	20	14	37	1.91
46035--46060	2	13.0	2	100	0	52	50	0	0	50	1.00
48467--48504	2	19.0	2	100	0	76	50	0	0	50	1.00
48728--48764	4	9.2	4	100	0	74	0	24	0	75	0.80
49348--49392	22	2.0	23	86	4	65	35	15	6	42	1.73
78830--78902	36	2.0	36	81	5	85	52	2	1	43	1.24
81646--81739	38	2.5	38	85	3	127	41	37	10	10	1.75
86119--86383	63	4.1	64	69	14	195	45	3	4	45	1.42
86063--86304	34	7.1	34	71	16	146	44	3	6	45	1.47
86215--86319	34	3.0	34	80	5	95	45	5	6	41	1.54
86113--86397	34	8.8	33	67	18	93	45	3	5	45	1.43
86132--86396	97	2.7	98	74	11	242	46	3	5	43	1.45
87351--87516	31	5.5	31	90	8	281	39	21	19	19	1.93
88158--88381	64	3.5	63	82	7	242	28	20	19	32	1.97

Tables:   1

The End!