genome.fa.s1929.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001929.1 Hibiscus syriacus cultivar Beakdansim tig00003901_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67338

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6156--6186	14	2.2	14	94	0	53	67	0	0	32	0.91
7162--7484	45	7.3	45	90	3	494	21	22	11	44	1.84
7162--7484	87	3.6	89	89	4	456	21	22	11	44	1.84
7162--7484	132	2.4	133	91	3	499	21	22	11	44	1.84
8640--8673	18	1.9	18	88	5	52	29	17	0	52	1.45
14037--14228	45	4.3	45	91	0	312	20	21	11	45	1.83
14146--14218	23	3.2	23	67	18	71	20	23	12	43	1.85
17895--17953	31	1.9	31	92	0	100	38	5	6	49	1.52
18195--18235	17	2.7	15	82	17	57	4	14	34	46	1.66
18405--18429	5	5.0	5	100	0	50	40	40	20	0	1.52
22317--22359	22	2.0	22	95	0	77	16	23	25	34	1.95
22745--22820	40	1.9	40	91	5	127	21	14	11	52	1.73
36022--36064	21	2.0	21	86	0	59	30	27	25	16	1.97
36044--36195	68	2.3	67	88	1	214	28	28	26	16	1.97
36498--36567	29	2.4	29	92	0	113	38	10	12	38	1.77
36583--36642	30	2.0	31	90	3	95	36	6	23	33	1.81
36862--36906	22	2.0	22	100	0	90	20	26	26	26	1.99
36862--36914	22	2.4	22	93	0	79	20	24	24	30	1.99
42940--42982	21	2.0	21	86	0	59	30	27	25	16	1.97
42962--43104	72	2.0	71	87	1	205	27	25	30	16	1.96
43420--43489	29	2.4	29	92	0	113	38	10	12	38	1.77
43505--43564	30	2.0	31	90	3	95	36	6	23	33	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43782--43826	22	2.0	22	100	0	90	20	26	26	26	1.99
43782--43834	22	2.4	22	93	0	79	20	24	24	30	1.99
46526--46869	54	6.4	54	89	2	467	37	21	15	25	1.93
46644--46729	27	3.2	27	63	12	68	45	18	11	24	1.83
59026--59234	43	4.9	43	85	3	287	16	24	24	33	1.96
61201--61235	13	2.7	13	90	0	52	20	45	20	14	1.85
61214--61254	18	2.3	18	82	0	55	19	46	19	14	1.84
61200--61261	31	2.0	31	96	0	115	19	43	19	17	1.88
63415--63591	41	4.2	43	87	5	229	17	25	23	32	1.97
63415--63590	83	2.1	84	85	9	243	17	26	23	32	1.96

Tables:   1

The End!