Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01001933.1 Hibiscus syriacus cultivar Beakdansim tig00003911_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111224
ACGTcount: A:0.32, C:0.19, G:0.17, T:0.33
Found at i:3174 original size:20 final size:20
Alignment explanation
Indices: 3149--3195 Score: 94
Period size: 20 Copynumber: 2.4 Consensus size: 20
3139 TATCTCCAAC
3149 TATAACCTTACCTTCAGTTA
1 TATAACCTTACCTTCAGTTA
3169 TATAACCTTACCTTCAGTTA
1 TATAACCTTACCTTCAGTTA
3189 TATAACC
1 TATAACC
3196 AACCTTAAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.32, C:0.26, G:0.04, T:0.38
Consensus pattern (20 bp):
TATAACCTTACCTTCAGTTA
Found at i:3999 original size:21 final size:19
Alignment explanation
Indices: 3957--4000 Score: 52
Period size: 21 Copynumber: 2.2 Consensus size: 19
3947 GCCTTATTTG
*
3957 TTTATTAAATTATGTGATA
1 TTTATTAAATCATGTGATA
*
3976 TTTATTATAATCATGCTTATA
1 TTTATTA-AATCATG-TGATA
3997 TTTA
1 TTTA
4001 GGAAGGGAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 7 0.33
20 6 0.29
21 8 0.38
ACGTcount: A:0.34, C:0.05, G:0.07, T:0.55
Consensus pattern (19 bp):
TTTATTAAATCATGTGATA
Found at i:6962 original size:33 final size:33
Alignment explanation
Indices: 6924--7015 Score: 130
Period size: 33 Copynumber: 2.8 Consensus size: 33
6914 CCCGATACAC
*
6924 AAGAAACCACTTCCTCCACCAATTCCATTATAT
1 AAGAAACCACTTCCTCCACCAATTCCAGTATAT
* *
6957 AAGAAACCACTTCCTCCACCAGTTCGAGTATAT
1 AAGAAACCACTTCCTCCACCAATTCCAGTATAT
* * *
6990 AAAAAAACACTTCCTCCACCTATTCC
1 AAGAAACCACTTCCTCCACCAATTCC
7016 TGCATACAAG
Statistics
Matches: 51, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
33 51 1.00
ACGTcount: A:0.36, C:0.34, G:0.05, T:0.25
Consensus pattern (33 bp):
AAGAAACCACTTCCTCCACCAATTCCAGTATAT
Found at i:8273 original size:21 final size:19
Alignment explanation
Indices: 8231--8274 Score: 52
Period size: 21 Copynumber: 2.2 Consensus size: 19
8221 GCCTTATTTG
*
8231 TTTATTAAATTATGTGATA
1 TTTATTAAATCATGTGATA
*
8250 TTTATTATAATCATGCTTATA
1 TTTATTA-AATCATG-TGATA
8271 TTTA
1 TTTA
8275 GGAAGGGAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 7 0.33
20 6 0.29
21 8 0.38
ACGTcount: A:0.34, C:0.05, G:0.07, T:0.55
Consensus pattern (19 bp):
TTTATTAAATCATGTGATA
Found at i:11234 original size:31 final size:33
Alignment explanation
Indices: 11198--11287 Score: 130
Period size: 31 Copynumber: 2.8 Consensus size: 33
11188 CCCGATACAC
11198 AAGAAACCACTTCCTCCACCAATTCCA-T-TAT
1 AAGAAACCACTTCCTCCACCAATTCCAGTATAT
* *
11229 AAGAAACCACTTCCTCCACCAGTTCGAGTATAT
1 AAGAAACCACTTCCTCCACCAATTCCAGTATAT
* *
11262 AAAAAACCACTTCCTCCACCTATTCC
1 AAGAAACCACTTCCTCCACCAATTCC
11288 TGCATACAAG
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
31 25 0.49
32 1 0.02
33 25 0.49
ACGTcount: A:0.34, C:0.36, G:0.06, T:0.24
Consensus pattern (33 bp):
AAGAAACCACTTCCTCCACCAATTCCAGTATAT
Found at i:11269 original size:33 final size:31
Alignment explanation
Indices: 11201--11287 Score: 120
Period size: 33 Copynumber: 2.7 Consensus size: 31
11191 GATACACAAG
*
11201 AAACCACTTCCTCCACCAATTCCATTATAAG
1 AAACCACTTCCTCCACCAATTCCATTATAAA
* *
11232 AAACCACTTCCTCCACCAGTTCGAGTATATAAA
1 AAACCACTTCCTCCACCAATTCCA-T-TATAAA
*
11265 AAACCACTTCCTCCACCTATTCC
1 AAACCACTTCCTCCACCAATTCC
11288 TGCATACAAG
Statistics
Matches: 48, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
31 22 0.46
32 1 0.02
33 25 0.52
ACGTcount: A:0.33, C:0.37, G:0.05, T:0.25
Consensus pattern (31 bp):
AAACCACTTCCTCCACCAATTCCATTATAAA
Found at i:12641 original size:316 final size:313
Alignment explanation
Indices: 12058--12645 Score: 1079
Period size: 316 Copynumber: 1.9 Consensus size: 313
12048 AACTTGTATG
12058 TCTCCTCTCTCGATTTTGATGGAGAGTTTTTATAGTGATTTTAAGTGTTAATGTTAAGTGTAGAT
1 TCTCCTCTCTCGATTTTGATGGAGAGTTTTTATAGTGATTTTAAGTGTTAATGTTAAGTGTAGAT
*
12123 CTATGATCATTATATGTAAGTTTAAACAAACAAATTTATTTGACGTGATTAACTGTCAATTGATT
66 CTATGATCATTATATGTAAGTTTAAACAAACAAATTTATTGGACGTGATTAACTGTCAATTGATT
*
12188 TTAATAAATTACAGAGAATATTTTAGAAGTTATATCAAAAGATTGTGATTTCTCTAAGGATATAA
131 TTAATAAATCACAGAGAATATTTTAGAAGTTATATCAAAAGATTGTGATTTCTCTAAGGATATAA
12253 GGCTTCGAGTGTCTTATGTCTCGTGCTTAGAAATATTTTTTTGGGGCACTCCTCTCTGAAGGAGG
196 GGCTTCGAGTGTCTTATGTCTCGTGCTTAGAAATATTTTTTTGGGGCACTCCTCTCTGAAGGAGG
12318 AGAGACCATGATGTGTAGAGTGGAGGAGATTCGAAGAACTTGGATGTCTCCTC
261 AGAGACCATGATGTGTAGAGTGGAGGAGATTCGAAGAACTTGGATGTCTCCTC
*
12371 TCTCTCTCTCTC-TTTTTGATGGAGAGTTTTTATAGTGATTTTAAGTGTTAATGTTAAGTGTAGA
1 TCTC-CTCTCTCGATTTTGATGGAGAGTTTTTATAGTGATTTTAAGTGTTAATGTTAAGTGTAGA
*
12435 TCTATGATCATTATATGTAAGTTAACTAAACAAACAAATTTATTGGATGTGATTAACTGTCAATT
65 TCTATGATCATTATATGTAAGTT---TAAACAAACAAATTTATTGGACGTGATTAACTGTCAATT
* *
12500 GATTTTGATAAATCATAGAGAATATTTTAGAAGTTATATCAAAAGATTGTGATTTCTCTAAGGAT
127 GATTTTAATAAATCACAGAGAATATTTTAGAAGTTATATCAAAAGATTGTGATTTCTCTAAGGAT
12565 ATAAGGCTTCGAGTGTCTTATGTCTCGTGCTTAGAAATATTTTTTTGGGGCACTCCTCTCTGAAG
192 ATAAGGCTTCGAGTGTCTTATGTCTCGTGCTTAGAAATATTTTTTTGGGGCACTCCTCTCTGAAG
12630 GAGGAGAGACCATGAT
257 GAGGAGAGACCATGAT
12646 AGGGATGGCA
Statistics
Matches: 265, Mismatches: 6, Indels: 5
0.96 0.02 0.02
Matches are distributed among these distances:
313 78 0.29
314 7 0.03
316 180 0.68
ACGTcount: A:0.30, C:0.12, G:0.20, T:0.38
Consensus pattern (313 bp):
TCTCCTCTCTCGATTTTGATGGAGAGTTTTTATAGTGATTTTAAGTGTTAATGTTAAGTGTAGAT
CTATGATCATTATATGTAAGTTTAAACAAACAAATTTATTGGACGTGATTAACTGTCAATTGATT
TTAATAAATCACAGAGAATATTTTAGAAGTTATATCAAAAGATTGTGATTTCTCTAAGGATATAA
GGCTTCGAGTGTCTTATGTCTCGTGCTTAGAAATATTTTTTTGGGGCACTCCTCTCTGAAGGAGG
AGAGACCATGATGTGTAGAGTGGAGGAGATTCGAAGAACTTGGATGTCTCCTC
Found at i:13701 original size:19 final size:18
Alignment explanation
Indices: 13666--13711 Score: 65
Period size: 19 Copynumber: 2.5 Consensus size: 18
13656 GATCCTTAAT
*
13666 TTTTTATTACATTTTTTA
1 TTTTTATAACATTTTTTA
13684 TTTTTATAACATTTTTTTA
1 TTTTTATAACA-TTTTTTA
*
13703 TCTTTATAA
1 TTTTTATAA
13712 TTAATACCCT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
18 10 0.40
19 15 0.60
ACGTcount: A:0.26, C:0.07, G:0.00, T:0.67
Consensus pattern (18 bp):
TTTTTATAACATTTTTTA
Found at i:14050 original size:14 final size:15
Alignment explanation
Indices: 14021--14056 Score: 65
Period size: 14 Copynumber: 2.5 Consensus size: 15
14011 ATATGGATTG
14021 ATTTATTTTAAAATA
1 ATTTATTTTAAAATA
14036 ATTTATTTT-AAATA
1 ATTTATTTTAAAATA
14050 ATTTATT
1 ATTTATT
14057 AGTATGGATT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 12 0.57
15 9 0.43
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (15 bp):
ATTTATTTTAAAATA
Found at i:14075 original size:22 final size:22
Alignment explanation
Indices: 14059--14104 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
14049 AATTTATTAG
14059 TATGGATTGATTTATTTTAAAA
1 TATGGATTGATTTATTTTAAAA
14081 TATGGATTGATTTATTTTAAAA
1 TATGGATTGATTTATTTTAAAA
14103 TA
1 TA
14105 ATTTATTAGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.37, C:0.00, G:0.13, T:0.50
Consensus pattern (22 bp):
TATGGATTGATTTATTTTAAAA
Found at i:14100 original size:54 final size:54
Alignment explanation
Indices: 14036--14644 Score: 635
Period size: 54 Copynumber: 11.4 Consensus size: 54
14026 TTTTAAAATA
14036 ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTG
*
14090 ATTTATTTTAAAATAATTTATTAGTATAGATTGATTTATTTTAAAATATGGATTG
1 ATTTATTTT-AAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTG
*
14145 ATTTATTTTAAATAATTTATTAGTATGTATTGATTTATTTTAAAATATGGATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTG
*
14199 ATTTATTTTAAATAATTTATTAGTATGTATTGATTTATTTTAAAATATGGATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTG
14253 ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTG
14307 ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTG
* * * **
14361 ATTTA--TT--AT--TGTAGTT-GTATAGATTGATTTATGTT-AAATAATTTATTAG
1 ATTTATTTTAAATAATTTA-TTAGTATGGATTGATTTATTTTAAAAT-ATGGATT-G
** * ** * * * **
14410 TATGGA-TTGATTTATTTTA-AAATATGGATTGATTTATTTT-AAATAATTTATTAG
1 -ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAAT-ATGGATT-G
** * ** * * * *
14464 TATGGA-TTGATTTATTTTA-AAATATGGATTGATTTATTTT-AAATA---ATTT
1 -ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTG
* * ** * * * ***
14513 A-TTAGTATGGATATTTTA-AAATATGGATTGATTTATTATTGTAGTTGTATGGATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTGATTTA-T-TT-TA-AAATATGGATTG
*
14569 ATTTATTTTAAATAATTTATTAGTATGGATTAATTTATTTTAAAATATGGATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTG
14623 ATTTATTTTAAATAATTTATTA
1 ATTTATTTTAAATAATTTATTA
14645 TTGTAGTTGT
Statistics
Matches: 492, Mismatches: 41, Indels: 44
0.85 0.07 0.08
Matches are distributed among these distances:
47 5 0.01
48 51 0.10
49 4 0.01
50 10 0.02
51 2 0.00
52 2 0.00
53 4 0.01
54 323 0.66
55 58 0.12
56 6 0.01
57 13 0.03
58 14 0.03
ACGTcount: A:0.35, C:0.00, G:0.13, T:0.52
Consensus pattern (54 bp):
ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTG
Found at i:14184 original size:22 final size:22
Alignment explanation
Indices: 14168--14210 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
14158 AATTTATTAG
*
14168 TATGTATTGATTTATTTTAAAA
1 TATGGATTGATTTATTTTAAAA
14190 TATGGATTGATTTATTTTAAA
1 TATGGATTGATTTATTTTAAA
14211 TAATTTATTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.53
Consensus pattern (22 bp):
TATGGATTGATTTATTTTAAAA
Found at i:14238 original size:22 final size:22
Alignment explanation
Indices: 14222--14264 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
14212 AATTTATTAG
*
14222 TATGTATTGATTTATTTTAAAA
1 TATGGATTGATTTATTTTAAAA
14244 TATGGATTGATTTATTTTAAA
1 TATGGATTGATTTATTTTAAA
14265 TAATTTATTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.53
Consensus pattern (22 bp):
TATGGATTGATTTATTTTAAAA
Found at i:14301 original size:22 final size:22
Alignment explanation
Indices: 14276--14318 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
14266 AATTTATTAG
14276 TATGGATTGATTTATTTTAAAA
1 TATGGATTGATTTATTTTAAAA
14298 TATGGATTGATTTATTTTAAA
1 TATGGATTGATTTATTTTAAA
14319 TAATTTATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.35, C:0.00, G:0.14, T:0.51
Consensus pattern (22 bp):
TATGGATTGATTTATTTTAAAA
Found at i:14421 original size:188 final size:182
Alignment explanation
Indices: 14194--14644 Score: 812
Period size: 188 Copynumber: 2.4 Consensus size: 182
14184 TTAAAATATG
*
14194 GATTGATTTATTTTAAATAATTTATTAGTATGTATTGATTTATTTTAAAATATGGATTGATTTAT
1 GATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTGATTTAT
14259 TTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTGATTTATTTTAAATAATT
66 TTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTGATTTATTTTAAATAATT
14324 TATTAGTATGGATTGATTTATTTTAAAATATGGATTGATTTATTATTGTAGTTGTATA
131 TATTAGTAT-G---GA--TATTTTAAAATATGGATTGATTTATTATTGTAGTTGTATA
*
14382 GATTGATTTATGTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTGATTTAT
1 GATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTGATTTAT
14447 TTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTGATTTATTTTAAATAATT
66 TTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTGATTTATTTTAAATAATT
*
14512 TATTAGTATGGATATTTTAAAATATGGATTGATTTATTATTGTAGTTGTATG
131 TATTAGTATGGATATTTTAAAATATGGATTGATTTATTATTGTAGTTGTATA
*
14564 GATTGATTTATTTTAAATAATTTATTAGTATGGATTAATTTATTTTAAAATATGGATTGATTTAT
1 GATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTGATTTAT
14629 TTTAAATAATTTATTA
66 TTTAAATAATTTATTA
14645 TTGTAGTTGT
Statistics
Matches: 258, Mismatches: 5, Indels: 6
0.96 0.02 0.02
Matches are distributed among these distances:
182 118 0.46
184 2 0.01
187 1 0.00
188 137 0.53
ACGTcount: A:0.35, C:0.00, G:0.13, T:0.52
Consensus pattern (182 bp):
GATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTGATTTAT
TTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTGATTTATTTTAAATAATT
TATTAGTATGGATATTTTAAAATATGGATTGATTTATTATTGTAGTTGTATA
Found at i:14423 original size:32 final size:31
Alignment explanation
Indices: 14377--14524 Score: 134
Period size: 32 Copynumber: 5.3 Consensus size: 31
14367 TATTGTAGTT
*
14377 GTATAGATTGATTTATGTTAAATAATTTATTA
1 GTATGGATTGATTTAT-TTAAATAATTTATTA
14409 GTATGGATTGATTTATTT---TAA---A--A
1 GTATGGATTGATTTATTTAAATAATTTATTA
14432 -TATGGATTGATTTATTTTAAATAATTTATTA
1 GTATGGATTGATTTA-TTTAAATAATTTATTA
14463 GTATGGATTGATTTATTT---TAA---A--A
1 GTATGGATTGATTTATTTAAATAATTTATTA
14486 -TATGGATTGATTTATTTTAAATAATTTATTA
1 GTATGGATTGATTTA-TTTAAATAATTTATTA
14517 GTATGGAT
1 GTATGGAT
14525 ATTTTAAAAT
Statistics
Matches: 95, Mismatches: 1, Indels: 40
0.70 0.01 0.29
Matches are distributed among these distances:
22 28 0.29
23 8 0.08
25 2 0.02
26 6 0.06
28 6 0.06
29 2 0.02
31 7 0.07
32 36 0.38
ACGTcount: A:0.35, C:0.00, G:0.14, T:0.51
Consensus pattern (31 bp):
GTATGGATTGATTTATTTAAATAATTTATTA
Found at i:14424 original size:134 final size:128
Alignment explanation
Indices: 14222--14636 Score: 545
Period size: 134 Copynumber: 3.2 Consensus size: 128
14212 AATTTATTAG
* * *
14222 TATGTATTGATTTATTTTAAAATATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGAT
1 TATGGATTGATTTATTTTTAAATA--GATTGATTTATGTTAAATAATTTATTAGTATGGATTGAT
14287 TTATTTTAAAATATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAA
64 TTATTTTAAAATATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAA
*
14352 TATGGATTGATTTATTATTGTAGTTGTATAGATTGATTTATGTTAAATAATTTATTAGTATGGAT
1 TATGGATTGATTTATT-TT-TA----AATAGATTGATTTATGTTAAATAATTTATTAGTATGGAT
14417 TGATTTATTTTAAAATATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTT
60 TGATTTATTTTAAAATATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTT
14482 AAAA
125 AAAA
* ** * * *
14486 TATGGATTGATTTA-TTTTAAATA-ATTTA-TTA-GTATGGATATTTTA-AAATATGGATTGATT
1 TATGGATTGATTTATTTTTAAATAGATTGATTTATGT-TAAATAATTTATTAGTATGGATTGATT
*** *
14546 TATTATTGTAGTTGTATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTAATTTATTTTA
65 TA-T-TT-TA-AAATATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTA
14611 AAA
126 AAA
14614 TATGGATTGATTTA-TTTTAAATA
1 TATGGATTGATTTATTTTTAAATA
14637 ATTTATTATT
Statistics
Matches: 259, Mismatches: 15, Indels: 24
0.87 0.05 0.08
Matches are distributed among these distances:
124 17 0.07
125 12 0.05
126 6 0.02
127 5 0.02
128 76 0.29
130 15 0.06
131 4 0.02
132 3 0.01
133 1 0.00
134 117 0.45
136 3 0.01
ACGTcount: A:0.34, C:0.00, G:0.14, T:0.52
Consensus pattern (128 bp):
TATGGATTGATTTATTTTTAAATAGATTGATTTATGTTAAATAATTTATTAGTATGGATTGATTT
ATTTTAAAATATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAA
Found at i:14426 original size:22 final size:22
Alignment explanation
Indices: 14410--14452 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
14400 AATTTATTAG
14410 TATGGATTGATTTATTTTAAAA
1 TATGGATTGATTTATTTTAAAA
14432 TATGGATTGATTTATTTTAAA
1 TATGGATTGATTTATTTTAAA
14453 TAATTTATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.35, C:0.00, G:0.14, T:0.51
Consensus pattern (22 bp):
TATGGATTGATTTATTTTAAAA
Found at i:14489 original size:22 final size:22
Alignment explanation
Indices: 14464--14549 Score: 93
Period size: 22 Copynumber: 3.7 Consensus size: 22
14454 AATTTATTAG
14464 TATGGATTGATTTATTTTAAAA
1 TATGGATTGATTTATTTTAAAA
14486 TATGGATTGATTTATTTT-AAA
1 TATGGATTGATTTATTTTAAAA
** *
14507 TAATTTATTAGTATGGATATTTTAAAA
1 T-ATGGATT-G-AT--TTATTTTAAAA
14534 TATGGATTGATTTATT
1 TATGGATTGATTTATT
14550 ATTGTAGTTG
Statistics
Matches: 52, Mismatches: 6, Indels: 12
0.74 0.09 0.17
Matches are distributed among these distances:
21 4 0.08
22 27 0.52
23 1 0.02
24 4 0.08
25 1 0.02
26 11 0.21
27 4 0.08
ACGTcount: A:0.35, C:0.00, G:0.14, T:0.51
Consensus pattern (22 bp):
TATGGATTGATTTATTTTAAAA
Found at i:14580 original size:74 final size:76
Alignment explanation
Indices: 14486--14629 Score: 238
Period size: 74 Copynumber: 1.9 Consensus size: 76
14476 TATTTTAAAA
14486 TATGGATTGATTTATTTTAAATAATTTATTAGTATGG-A-TATTTTAAAATATGGATTGATTTAT
1 TATGGATTGATTTATTTTAAATAATTTATTAGTATGGAATTATTTTAAAATATGGATTGATTTAT
14549 TATTGTAGTTG
66 TATTGTAGTTG
14560 TATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTAATTTATTTTAAAATATGGATTGAT
1 TATGGATTGATTTATTTTAAATAATTTATTAGTATGG---AA-TTATTTTAAAATATGGATTGAT
14625 TTATT
62 TTATT
14630 TTAAATAATT
Statistics
Matches: 64, Mismatches: 0, Indels: 6
0.91 0.00 0.09
Matches are distributed among these distances:
74 37 0.58
78 1 0.02
80 26 0.41
ACGTcount: A:0.33, C:0.00, G:0.15, T:0.52
Consensus pattern (76 bp):
TATGGATTGATTTATTTTAAATAATTTATTAGTATGGAATTATTTTAAAATATGGATTGATTTAT
TATTGTAGTTG
Found at i:14608 original size:22 final size:22
Alignment explanation
Indices: 14592--14634 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
14582 AATTTATTAG
14592 TATGGATTAATTTATTTTAAAA
1 TATGGATTAATTTATTTTAAAA
*
14614 TATGGATTGATTTATTTTAAA
1 TATGGATTAATTTATTTTAAA
14635 TAATTTATTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.37, C:0.00, G:0.12, T:0.51
Consensus pattern (22 bp):
TATGGATTAATTTATTTTAAAA
Found at i:14694 original size:31 final size:31
Alignment explanation
Indices: 14659--14717 Score: 91
Period size: 31 Copynumber: 1.9 Consensus size: 31
14649 AGTTGTATAG
* * *
14659 ATTATTTAAATTTTAGTATTATAAAACTAAA
1 ATTATTTAAATCTCAGTATTACAAAACTAAA
14690 ATTATTTAAATCTCAGTATTACAAAACT
1 ATTATTTAAATCTCAGTATTACAAAACT
14718 CTTTTAAGTT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.46, C:0.08, G:0.03, T:0.42
Consensus pattern (31 bp):
ATTATTTAAATCTCAGTATTACAAAACTAAA
Found at i:16632 original size:22 final size:22
Alignment explanation
Indices: 16588--16632 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
16578 ATTACATAAC
*
16588 TTTAAAAAAAGTATCGATCCTT
1 TTTAAAAAAAGTATCGAACCTT
*
16610 TTTATAAAAAGTAT-GAACACTT
1 TTTAAAAAAAGTATCGAAC-CTT
16632 T
1 T
16633 CAATATAATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 3 0.15
22 17 0.85
ACGTcount: A:0.42, C:0.11, G:0.09, T:0.38
Consensus pattern (22 bp):
TTTAAAAAAAGTATCGAACCTT
Found at i:16703 original size:21 final size:22
Alignment explanation
Indices: 16658--16704 Score: 78
Period size: 23 Copynumber: 2.1 Consensus size: 22
16648 AAATATGATA
16658 TAATAGGTAGTGCTTATATAATG
1 TAATAGGTAGTGCTTATAT-ATG
16681 TAATAGGTAGTGCTTATAT-TG
1 TAATAGGTAGTGCTTATATATG
16702 TAA
1 TAA
16705 AGTATCTATC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
21 5 0.21
23 19 0.79
ACGTcount: A:0.34, C:0.04, G:0.21, T:0.40
Consensus pattern (22 bp):
TAATAGGTAGTGCTTATATATG
Found at i:17147 original size:23 final size:23
Alignment explanation
Indices: 17116--17188 Score: 101
Period size: 23 Copynumber: 3.2 Consensus size: 23
17106 ATAAGTAAAA
* *
17116 ATATGATGTAATAGGTAGCGCCT
1 ATATAATGTAATAGGTAGCGCTT
*
17139 ATATAATGTAATAGGTAGCGTTT
1 ATATAATGTAATAGGTAGCGCTT
* *
17162 ATAAAATGTAATAGGTAGTGCTT
1 ATATAATGTAATAGGTAGCGCTT
17185 ATAT
1 ATAT
17189 TGTAAAGTAT
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 43 1.00
ACGTcount: A:0.36, C:0.07, G:0.22, T:0.36
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:17625 original size:23 final size:23
Alignment explanation
Indices: 17594--17666 Score: 101
Period size: 23 Copynumber: 3.2 Consensus size: 23
17584 ATAGATAAAA
* *
17594 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAAGTAGCGCTT
* *
17617 ATATAATGTAATATGTAGCGTTT
1 ATATAATGTAATAAGTAGCGCTT
*
17640 ATATAATGTAATAAGTAGTGCTT
1 ATATAATGTAATAAGTAGCGCTT
17663 ATAT
1 ATAT
17667 TGTAAAGTAT
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 44 1.00
ACGTcount: A:0.36, C:0.05, G:0.19, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAAGTAGCGCTT
Found at i:18137 original size:23 final size:23
Alignment explanation
Indices: 18069--18141 Score: 119
Period size: 23 Copynumber: 3.2 Consensus size: 23
18059 ATAGGTAAAA
**
18069 ATATAATGTAATAGGTAGCCCTT
1 ATATAATGTAATAGGTAGCGTTT
18092 ATATAATGTAATAGGTAGCGTTT
1 ATATAATGTAATAGGTAGCGTTT
*
18115 ATATAATGTAATAGGTAGTGTTT
1 ATATAATGTAATAGGTAGCGTTT
18138 ATAT
1 ATAT
18142 TGTAAAGTAT
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 47 1.00
ACGTcount: A:0.36, C:0.05, G:0.19, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGTTT
Found at i:18412 original size:953 final size:957
Alignment explanation
Indices: 16226--19979 Score: 5991
Period size: 953 Copynumber: 3.9 Consensus size: 957
16216 TTTTTACCTG
* *
16226 TTATATTGTAAAGTATTTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTGTAGAAAACATT
1 TTATATTGTAAAGTATCTATCATTTTTATAAAAGTGTCCATACTTTTTTCACTGTAGAAAACATT
* * *
16291 AATTTAAGGTTATCTTTTAAGTAAGTTTTAAGAAATTAATTTAGTAATTATAGACGTGTAATGAT
66 AATTTAAGGTTA-GTTTTAA--AA----T-----ATTAATTTAGTAATTATAGGCGTCTAATGAT
16356 TTATTTTTTACGTTACGGTATATATTATTATTAAATTAAAAACAATAAACATATATATTACATAT
119 TTATTTTTTACGTTACGGTATATATTATTATTAAATTAAAAACAATAAACATATATATTACATAT
*
16421 TTATTATTATCTTTTGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAA
184 TTATTATTATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAA
16486 ACAATCAAATAATTTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAA
249 ACAATCAAATAA-TTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAA
*
16551 ATACTATTAAAAAAAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCCTTTTTATA
313 ACACTATTAAAAAAAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCCTTTTTATA
*
16616 AAAAGTATGAACACTTTCAATATAATAGGT-AAAA-AT-ATG----A--TA-----TA-AT-A-G
378 AAAAGTATGAACACTTTCAATATAATAGATAAAAATATGATGTAATAGGTAGCGCTTATATAATG
* *
16664 --GTA-GT-GC--TTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTAAT
443 TAATAGGTAGCGTTTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTAT
16723 AAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATATTTTGAGTAAATTTT
508 AAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGG------TTTGAG----TTTT
*
16788 AAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTACGATATATATTATT
563 AAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTACGGTATATATTATT
* *
16853 ATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATATTTGGTTAATATTATTAA
628 ATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATCTTTGGTTAATATTGTTAA
* *
16918 ATTTAAATTCTAAATAATATTTT-TAAAATGTCAAAAAAATCAAATAATTTTTTGTGTAAATGAA
693 ATTTAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGTAAATGAA
16982 ATTATTAAATTAATATTATAGGTGGAAAACATGAAACACTATTAAAAAAATTGAAACATAAATTA
758 ATTATTAAATTAATATTATAGGTGGAAAACATGAAACACTATTAAAAAAATTGAAACATAAATTA
* *
17047 CATAACTTTAAAAAAAGTATCGATCCTTTTTATAAAAAAATATGGACACTTTCAATATAATAAGT
823 CATAACTTTAAAAAAAGTATCGATCCTTTTTAT-AAAAAGTATGGACACTTTCAATATAATAGGT
*
17112 AAAAATATGATGTAATAGGTAGCGCC-TATATAATGTAATAGGTAGCGTTTATAAAATGTAATAG
887 AAAAATATGATGTAATAGGTAGC-CCTTATATAATGTAATAGGTAGCGTTTATATAATGTAATAG
17176 GTAGTGC
951 GTAGTGC
*
17183 TTATATTGTAAAGTATCTATCATTTTTATAAAAGTGTCCATACTTTTTTCACTGTGGAAAACATT
1 TTATATTGTAAAGTATCTATCATTTTTATAAAAGTGTCCATACTTTTTTCACTGTAGAAAACATT
* *
17248 AATTTAAGGTTAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTCTTTACG
66 AATTTAAGGTTAGTTTTAAAATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACG
17313 TTACGGTATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATCT
131 TTACGGTATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATCT
*
17378 TTGGTTAATATTGGTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAA
196 TTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAA
17443 TTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAA
261 TTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAA
* * * *
17508 ATAAATGAAATATAAATTACATAACTTT-AAAAAAGTATCGATCATTTTTATAAAAAGTATGGAC
326 A-AATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCCTTTTTATAAAAAGTATGAAC
*
17572 ACTTTCAATATAATAGATAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATATGTAGCG
390 ACTTTCAATATAATAGATAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCG
* *
17637 TTTATATAATGTAATAAGTAGTGCTTATATTGTAAAGTATATATCCTTTTTATAAAAGTGTCCAT
455 TTTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCAT
*
17702 ACTTTTTTCACTATGGAAAACATTAATTTAAGG-TT-AGTTTTAAGATATTAATTTAGTAATTAT
520 ACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTTGAGTTTTAAGATATTAATTTAGTAATTAT
*
17765 AGGCGTCTAATGATTTATTTTTTACGTTAAGGTATATATTATTATTAAATTAAAAACAATAAACA
585 AGGCGTCTAATGATTTATTTTTTACGTTACGGTATATATTATTATTAAATTAAAAACAATAAACA
17830 TATATATTACATATTTATTATTATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTT
650 TATATATTACATATTTATTATTATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTT
*
17895 TATAAAATATCAAAACAATCAAATAATTTTTTGTGTAAATGAAATTA-T-AATTAATATTGTAGG
715 TATAAAATATCAAAACAATCAAATAATTTTTTGTGTAAATGAAATTATTAAATTAATATTATAGG
17958 TGGAAAACATGAAACACTATTAAAAAAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCG
780 TGGAAAACATGAAACACTATTAAAAAAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCG
* * *
18023 ATCCTTTTTATAAAAAGTATGTACACTTTTAATATAATAGGTAAAAATATAATGTAATAGGTAGC
845 ATCCTTTTTATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGC
*
18088 CCTTATATAATGTAATAGGTAGCGTTTATATAATGTAATAGGTAGTGT
910 CCTTATATAATGTAATAGGTAGCGTTTATATAATGTAATAGGTAGTGC
*
18136 TTATATTGTAAAGTATCTATCCTTTTTTATAAAAGTGTCCATACTTTTTTCACTGTAGAAAACAT
1 TTATATTGTAAAGTATCTAT-CATTTTTATAAAAGTGTCCATACTTTTTTCACTGTAGAAAACAT
*
18201 TAATTTAAGGTTAGTTTTAAAATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAT
65 TAATTTAAGGTTAGTTTTAAAATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
18266 GTTACGGTATATATTATTATTAAATT-AAAACAATAAACATATATATTACATATTTATTATTATC
130 GTTACGGTATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
18330 TTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATA
195 TTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATA
18395 ATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAA
260 ATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAA
* *
18460 AAAATTGAAACATAAATTGCATAACTTTAAAAAAAGTATCGATCTTTTTTATAAAAAGTATGAAC
325 AAAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCCTTTTTATAAAAAGTATGAAC
* * * *
18525 ACTTTCAATATAACAGGTAAAAATATGATGTAATAGGTATCGCTTATATAATGTAACAGGTAGCG
390 ACTTTCAATATAATAGATAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCG
* *
18590 TTTATATAATGTAATAGGTAGTGCTTATTTTGTAAAATATCTATCCTTTTTATAAAAGTGTCCAT
455 TTTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCAT
*
18655 ACTTTTTTCACTGTGGAAAACATTAATTTAAGG-TT-AGTTTCAAGATATTAATTTAGTAATTAT
520 ACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTTGAGTTTTAAGATATTAATTTAGTAATTAT
*
18718 AGGCGTCTAATGATTTATTTTTTACGTTACGGTATATATTATTATTAAATTAAAAATAATAAACA
585 AGGCGTCTAATGATTTATTTTTTACGTTACGGTATATATTATTATTAAATTAAAAACAATAAACA
* * *
18783 TATATATTACAAATTTATTATTATCTTTGGTTAATATTGTTAAATTTAAATTATAAATAGTATTT
650 TATATATTACATATTTATTATTATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTT
*
18848 TATAAAATATCAAAACAATCAAATAATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGG
715 TATAAAATATCAAAACAATCAAATAATTTTTTGTGTAAATGAAATTATTAAATTAATATTATAGG
* *
18913 TGGAAAACATGAAACGCTATTAAAAAAAATTGAAACATAAATTACATAACTTTTAAAAAAAATAT
780 TGGAAAACATGAAACACTATT-AAAAAAATTGAAACATAAATTACATAAC-TTTAAAAAAAGTAT
* *
18978 CGATCATTTTTATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATATGATGTAATAAGTA
843 CGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTA
** *
19043 GCGGTTATATAATGTAATAAGTAGCGTTTATATAATGTAATAGGTAGTGC
908 GCCCTTATATAATGTAATAGGTAGCGTTTATATAATGTAATAGGTAGTGC
* * * * *
19093 TTATATTGTAAAATATTTATCATTTTTATAAAAGTGTCGATACTTTTTTCACTGTGGAAAATATT
1 TTATATTGTAAAGTATCTATCATTTTTATAAAAGTGTCCATACTTTTTTCACTGTAGAAAACATT
**
19158 AATTTAAGGTTAGTTTTAAGTTATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACG
66 AATTTAAGGTTAGTTTTAAAATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACG
* *
19223 TTACGGTATTTATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATAT
131 TTACGGTATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATCT
* *
19288 TTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAGAATATTAAAACAATCAAATAA
196 TTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAA
*
19353 TTTTTTGTGTAAATAAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATT-AAAA
261 TTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAA
* * * * *
19417 AAATTGAAACATAAATCACATAACTTTAAAAAAAGTATTGATCCTTTTAATAAAAAGGATCG-AT
326 AAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCCTTTTTATAAAAAGTAT-GAAC
*
19481 ACTTTACAATAT-ATCA-AGTAAAAATATGATGTAATAGGTAGCACTTATATAATGTAATAGGTA
390 ACTTT-CAATATAAT-AGA-TAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTA
* * * *
19544 GCGCTTATATAATGTAATAGGTAGCGCTTATATTGTAAACTATCTATCCTTTTTATAGAAGTGTC
452 GCGTTTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTC
* * *
19609 CATAGTTATTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATCA
517 CATACTTTTTTCACTGTGGAAAACATTAATTTAAGG-------TT---TGAGTTTTAAGATATTA
* ** * *
19674 ATTTAGTAATTATATGTATCTAATGATTTATTTTTTATGTTACGGTATATATTATCATTAAATTA
572 ATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTACGGTATATATTATTATTAAATTA
19739 AAAACAATAAACATATATATATTACATATTTATTATTATCTTTGGTTAATATTGTTAAATTTAAA
637 AAAACAATAAAC--ATATATATTACATATTTATTATTATCTTTGGTTAATATTGTTAAATTTAAA
* * *
19804 TTCTAAATATTATTTTATAAAATATCAAAACAATTAAATAATTTTTTGTGCAAATGAAATTATTA
700 TTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGTAAATGAAATTATTA
19869 AATTAATATTATAGGTGGAAAACATGAAACACTATT-AAAAAATTGAAACATAAATTACATAACT
765 AATTAATATTATAGGTGGAAAACATGAAACACTATTAAAAAAATTGAAACATAAATTACATAACT
* *
19933 TTAAAAAATGTATTGATCCTTTTTATAAAAAGTATGGACACTTTCAA
830 TTAAAAAAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAA
19980 CATATTATAA
Statistics
Matches: 2621, Mismatches: 125, Indels: 91
0.92 0.04 0.03
Matches are distributed among these distances:
944 116 0.04
945 196 0.07
946 2 0.00
947 3 0.00
950 1 0.00
951 1 0.00
952 25 0.01
953 671 0.26
954 222 0.08
955 189 0.07
956 269 0.10
957 515 0.20
958 2 0.00
959 4 0.00
960 3 0.00
961 1 0.00
963 2 0.00
964 2 0.00
965 3 0.00
967 93 0.04
968 45 0.02
969 111 0.04
971 145 0.06
ACGTcount: A:0.42, C:0.07, G:0.11, T:0.40
Consensus pattern (957 bp):
TTATATTGTAAAGTATCTATCATTTTTATAAAAGTGTCCATACTTTTTTCACTGTAGAAAACATT
AATTTAAGGTTAGTTTTAAAATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACG
TTACGGTATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATCT
TTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAA
TTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAA
AAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCCTTTTTATAAAAAGTATGAACA
CTTTCAATATAATAGATAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCGT
TTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATA
CTTTTTTCACTGTGGAAAACATTAATTTAAGGTTTGAGTTTTAAGATATTAATTTAGTAATTATA
GGCGTCTAATGATTTATTTTTTACGTTACGGTATATATTATTATTAAATTAAAAACAATAAACAT
ATATATTACATATTTATTATTATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTT
ATAAAATATCAAAACAATCAAATAATTTTTTGTGTAAATGAAATTATTAAATTAATATTATAGGT
GGAAAACATGAAACACTATTAAAAAAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGA
TCCTTTTTATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCC
CTTATATAATGTAATAGGTAGCGTTTATATAATGTAATAGGTAGTGC
Found at i:18578 original size:23 final size:23
Alignment explanation
Indices: 18547--18617 Score: 90
Period size: 23 Copynumber: 3.1 Consensus size: 23
18537 ACAGGTAAAA
*
18547 ATATGATGTAATAGGTATCGCTT
1 ATATAATGTAATAGGTATCGCTT
* * *
18570 ATATAATGTAACAGGTAGCGTTT
1 ATATAATGTAATAGGTATCGCTT
18593 ATATAATGTAATAGGTAGT-GCTT
1 ATATAATGTAATAGGTA-TCGCTT
18616 AT
1 AT
18618 TTTGTAAAAT
Statistics
Matches: 40, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
23 40 1.00
ACGTcount: A:0.34, C:0.07, G:0.21, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTATCGCTT
Found at i:19052 original size:23 final size:23
Alignment explanation
Indices: 19026--19098 Score: 101
Period size: 23 Copynumber: 3.2 Consensus size: 23
19016 ATAGGTAAAA
* *
19026 ATATGATGTAATAAGTAGCGGTT
1 ATATAATGTAATAAGTAGCGCTT
*
19049 ATATAATGTAATAAGTAGCGTTT
1 ATATAATGTAATAAGTAGCGCTT
* *
19072 ATATAATGTAATAGGTAGTGCTT
1 ATATAATGTAATAAGTAGCGCTT
19095 ATAT
1 ATAT
19099 TGTAAAATAT
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 45 1.00
ACGTcount: A:0.37, C:0.04, G:0.21, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAAGTAGCGCTT
Found at i:19161 original size:479 final size:477
Alignment explanation
Indices: 16658--19979 Score: 5479
Period size: 478 Copynumber: 6.9 Consensus size: 477
16648 AAATATGATA
* * *
16658 TAATAGGTAGTGCTTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTAAT
1 TAATAGGTAGCGTTTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTAT
16723 AAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATATTTTGAGTAAATTTT
66 AAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGG-------TT-AG----TTTT
*
16788 AAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTACGATATATATTATT
119 AAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTACGGTATATATTATT
* *
16853 ATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATATTTGGTTAATATTATTAA
184 ATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATCTTTGGTTAATATTGTTAA
* *
16918 ATTTAAATTCTAAATAATATTTT-TAAAATGTCAAAAAAATCAAATAATTTTTTGTGTAAATGAA
249 ATTTAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGTAAATGAA
*
16982 ATTATTAAATTAATATTATAGGTGGAAAACATGAAACACTATTAAAAAAATTGAAACATAAATTA
314 ATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAATTGAAACATAAATTA
* *
17047 CATAACTTTAAAAAAAGTATCGATCCTTTTTATAAAAAAATATGGACACTTTCAATATAATAAGT
379 CATAACTTTAAAAAAAGTATCGATCCTTTTTAT-AAAAAGTATGGACACTTTCAATATAATAGGT
*
17112 AAAAATATGATGTAATAGGTAGCGCCTATATAATG
443 AAAAATATGATGTAATAGGTAGCGCTTATATAATG
* *
17147 TAATAGGTAGCGTTTATAAAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCATTTTTAT
1 TAATAGGTAGCGTTTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTAT
17212 AAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTAGTTTTAAGATATTAATT
66 AAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTAGTTTTAAGATATTAATT
*
17277 TAGTAATTATAGGCGTCTAATGATTTATTCTTTACGTTACGGTATATATTATTATTAAATTAAAA
131 TAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTACGGTATATATTATTATTAAATTAAAA
*
17342 ACAATAAACATATATATTACATATTTATTATTATCTTTGGTTAATATTGGTAAATTTAAATTCTA
196 ACAATAAACATATATATTACATATTTATTATTATCTTTGGTTAATATTGTTAAATTTAAATTCTA
17407 AATAATATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGTAAATGAAATTATTAAATTA
261 AATAATATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGTAAATGAAATTATTAAATTA
* *
17472 ATATTGTAGGTGGAAAACATGAAACACTATTAAAAAATAAATGAAATATAAATTACATAACTTT-
326 ATATTGTAGGTGGAAAACATGAAACACTATT-AAAAA-AATTGAAACATAAATTACATAACTTTA
* *
17536 AAAAAAGTATCGATCATTTTTATAAAAAGTATGGACACTTTCAATATAATAGATAAAAATATGAT
389 AAAAAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATATGAT
17601 GTAATAGGTAGCGCTTATATAATG
454 GTAATAGGTAGCGCTTATATAATG
* * *
17625 TAATATGTAGCGTTTATATAATGTAATAAGTAGTGCTTATATTGTAAAGTATATATCCTTTTTAT
1 TAATAGGTAGCGTTTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTAT
*
17690 AAAAGTGTCCATACTTTTTTCACTATGGAAAACATTAATTTAAGGTTAGTTTTAAGATATTAATT
66 AAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTAGTTTTAAGATATTAATT
*
17755 TAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTAAGGTATATATTATTATTAAATTAAAA
131 TAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTACGGTATATATTATTATTAAATTAAAA
17820 ACAATAAACATATATATTACATATTTATTATTATCTTTGGTTAATATTGTTAAATTTAAATTCTA
196 ACAATAAACATATATATTACATATTTATTATTATCTTTGGTTAATATTGTTAAATTTAAATTCTA
17885 AATAATATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGTAAATGAAATTA-T-AATTA
261 AATAATATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGTAAATGAAATTATTAAATTA
17948 ATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAATTGAAACATAAATTACATAACTTTAAA
326 ATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAATTGAAACATAAATTACATAACTTTAAA
* * *
18013 AAAAGTATCGATCCTTTTTATAAAAAGTATGTACACTTTTAATATAATAGGTAAAAATATAATGT
391 AAAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATATGATGT
*
18078 AATAGGTAGCCCTTATATAATG
456 AATAGGTAGCGCTTATATAATG
*
18100 TAATAGGTAGCGTTTATATAATGTAATAGGTAGTGTTTATATTGTAAAGTATCTATCCTTTTTTA
1 TAATAGGTAGCGTTTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCC-TTTTTA
* *
18165 TAAAAGTGTCCATACTTTTTTCACTGTAGAAAACATTAATTTAAGGTTAGTTTTAAAATATTAAT
65 TAAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTAGTTTTAAGATATTAAT
*
18230 TTAGTAATTATAGGCGTCTAATGATTTATTTTTTATGTTACGGTATATATTATTATTAAATT-AA
130 TTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTACGGTATATATTATTATTAAATTAAA
18294 AACAATAAACATATATATTACATATTTATTATTATCTTTGGTTAATATTGTTAAATTTAAATTCT
195 AACAATAAACATATATATTACATATTTATTATTATCTTTGGTTAATATTGTTAAATTTAAATTCT
18359 AAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGTAAATGAAATTATTAAATT
260 AAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGTAAATGAAATTATTAAATT
*
18424 AATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAACATAAATTGCATAACTTTA
325 AATATTGTAGGTGGAAAACATGAAACACTATT-AAAAAAATTGAAACATAAATTACATAACTTTA
* * *
18489 AAAAAAGTATCGATCTTTTTTATAAAAAGTATGAACACTTTCAATATAACAGGTAAAAATATGAT
389 AAAAAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATATGAT
*
18554 GTAATAGGTATCGCTTATATAATG
454 GTAATAGGTAGCGCTTATATAATG
* * *
18578 TAACAGGTAGCGTTTATATAATGTAATAGGTAGTGCTTATTTTGTAAAATATCTATCCTTTTTAT
1 TAATAGGTAGCGTTTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTAT
*
18643 AAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTAGTTTCAAGATATTAATT
66 AAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTAGTTTTAAGATATTAATT
18708 TAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTACGGTATATATTATTATTAAATTAAAA
131 TAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTACGGTATATATTATTATTAAATTAAAA
* * *
18773 ATAATAAACATATATATTACAAATTTATTATTATCTTTGGTTAATATTGTTAAATTTAAATTATA
196 ACAATAAACATATATATTACATATTTATTATTATCTTTGGTTAATATTGTTAAATTTAAATTCTA
*
18838 AATAGTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGTAAATGAAATTATTAAATTA
261 AATAATATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGTAAATGAAATTATTAAATTA
*
18903 ATATTGTAGGTGGAAAACATGAAACGCTATTAAAAAAAATTGAAACATAAATTACATAACTTTTA
326 ATATTGTAGGTGGAAAACATGAAACACTATT-AAAAAAATTGAAACATAAATTACATAAC-TTTA
* *
18968 AAAAAAATATCGATCATTTTTATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATATGAT
389 AAAAAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATATGAT
* *
19033 GTAATAAGTAGCGGTTATATAATG
454 GTAATAGGTAGCGCTTATATAATG
* * * *
19057 TAATAAGTAGCGTTTATATAATGTAATAGGTAGTGCTTATATTGTAAAATATTTATCATTTTTAT
1 TAATAGGTAGCGTTTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTAT
* * *
19122 AAAAGTGTCGATACTTTTTTCACTGTGGAAAATATTAATTTAAGGTTAGTTTTAAGTTATTAATT
66 AAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTAGTTTTAAGATATTAATT
*
19187 TAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTACGGTATTTATTATTATTAAATTAAAA
131 TAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTACGGTATATATTATTATTAAATTAAAA
*
19252 ACAATAAACATATATATTACATATTTATTATTATATTTGGTTAATATTGTTAAATTTAAATTCTA
196 ACAATAAACATATATATTACATATTTATTATTATCTTTGGTTAATATTGTTAAATTTAAATTCTA
* * *
19317 AATAATATTTTATAGAATATTAAAACAATCAAATAATTTTTTGTGTAAATAAAATTATTAAATTA
261 AATAATATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGTAAATGAAATTATTAAATTA
*
19382 ATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAATTGAAACATAAATCACATAACTTTAAA
326 ATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAATTGAAACATAAATTACATAACTTTAAA
* * * * * *
19447 AAAAGTATTGATCCTTTTAATAAAAAGGATCGATACTTTACAATAT-ATCAAGTAAAAATATGAT
391 AAAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTT-CAATATAAT-AGGTAAAAATATGAT
*
19511 GTAATAGGTAGCACTTATATAATG
454 GTAATAGGTAGCGCTTATATAATG
* * *
19535 TAATAGGTAGCGCTTATATAATGTAATAGGTAGCGCTTATATTGTAAACTATCTATCCTTTTTAT
1 TAATAGGTAGCGTTTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTAT
* * *
19600 AGAAGTGTCCATAGTTATTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTT
66 AAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGG--------T---T-AGTTTT
* * ** * *
19665 AAGATATCAATTTAGTAATTATATGTATCTAATGATTTATTTTTTATGTTACGGTATATATTATC
119 AAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTACGGTATATATTATT
19730 ATTAAATTAAAAACAATAAACATATATATATTACATATTTATTATTATCTTTGGTTAATATTGTT
184 ATTAAATTAAAAACAATAAAC--ATATATATTACATATTTATTATTATCTTTGGTTAATATTGTT
* * *
19795 AAATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATTAAATAATTTTTTGTGCAAATG
247 AAATTTAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGTAAATG
*
19860 AAATTATTAAATTAATATTATAGGTGGAAAACATGAAACACTATT-AAAAAATTGAAACATAAAT
312 AAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAATTGAAACATAAAT
* *
19924 TACATAACTTTAAAAAATGTATTGATCCTTTTTATAAAAAGTATGGACACTTTCAA
377 TACATAACTTTAAAAAAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAA
19980 CATATTATAA
Statistics
Matches: 2668, Mismatches: 139, Indels: 51
0.93 0.05 0.02
Matches are distributed among these distances:
474 24 0.01
475 267 0.10
476 165 0.06
477 358 0.13
478 972 0.36
479 450 0.17
480 24 0.01
481 2 0.00
482 2 0.00
486 1 0.00
489 106 0.04
490 87 0.03
491 66 0.02
492 144 0.05
ACGTcount: A:0.42, C:0.07, G:0.11, T:0.40
Consensus pattern (477 bp):
TAATAGGTAGCGTTTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTAT
AAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTAGTTTTAAGATATTAATT
TAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTACGGTATATATTATTATTAAATTAAAA
ACAATAAACATATATATTACATATTTATTATTATCTTTGGTTAATATTGTTAAATTTAAATTCTA
AATAATATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGTAAATGAAATTATTAAATTA
ATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAATTGAAACATAAATTACATAACTTTAAA
AAAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATATGATGT
AATAGGTAGCGCTTATATAATG
Found at i:19485 original size:22 final size:21
Alignment explanation
Indices: 19441--19485 Score: 54
Period size: 22 Copynumber: 2.1 Consensus size: 21
19431 ATCACATAAC
* * *
19441 TTTAAAAAAAGTATTGATCCT
1 TTTAAAAAAAGGATCGATACT
19462 TTTAATAAAAAGGATCGATACT
1 TTTAA-AAAAAGGATCGATACT
19484 TT
1 TT
19486 ACAATATATC
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 5 0.25
22 15 0.75
ACGTcount: A:0.42, C:0.09, G:0.11, T:0.38
Consensus pattern (21 bp):
TTTAAAAAAAGGATCGATACT
Found at i:19530 original size:23 final size:23
Alignment explanation
Indices: 19504--19576 Score: 128
Period size: 23 Copynumber: 3.2 Consensus size: 23
19494 TCAAGTAAAA
* *
19504 ATATGATGTAATAGGTAGCACTT
1 ATATAATGTAATAGGTAGCGCTT
19527 ATATAATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
19550 ATATAATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
19573 ATAT
1 ATAT
19577 TGTAAACTAT
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 48 1.00
ACGTcount: A:0.36, C:0.08, G:0.21, T:0.36
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:20785 original size:29 final size:29
Alignment explanation
Indices: 20742--20824 Score: 139
Period size: 29 Copynumber: 2.8 Consensus size: 29
20732 CTCACCTAAC
20742 TAAATTGATGTAAGCAATGACATCATTAAT
1 TAAA-TGATGTAAGCAATGACATCATTAAT
*
20772 TAAATGATGTAAGCAATGACATCTTTAAT
1 TAAATGATGTAAGCAATGACATCATTAAT
*
20801 TAAATGATGTAAGTAATGACATCA
1 TAAATGATGTAAGCAATGACATCA
20825 ATTTAGTTTG
Statistics
Matches: 50, Mismatches: 3, Indels: 1
0.93 0.06 0.02
Matches are distributed among these distances:
29 46 0.92
30 4 0.08
ACGTcount: A:0.43, C:0.10, G:0.14, T:0.33
Consensus pattern (29 bp):
TAAATGATGTAAGCAATGACATCATTAAT
Found at i:25549 original size:29 final size:29
Alignment explanation
Indices: 25506--25588 Score: 139
Period size: 29 Copynumber: 2.8 Consensus size: 29
25496 CTCACCTAAC
25506 TAAATTGATGTAAGCAATGACATCATTAAT
1 TAAA-TGATGTAAGCAATGACATCATTAAT
*
25536 TAAATGATGTAAGCAATGACATCTTTAAT
1 TAAATGATGTAAGCAATGACATCATTAAT
*
25565 TAAATGATGTAAGTAATGACATCA
1 TAAATGATGTAAGCAATGACATCA
25589 ATTTAGTTTG
Statistics
Matches: 50, Mismatches: 3, Indels: 1
0.93 0.06 0.02
Matches are distributed among these distances:
29 46 0.92
30 4 0.08
ACGTcount: A:0.43, C:0.10, G:0.14, T:0.33
Consensus pattern (29 bp):
TAAATGATGTAAGCAATGACATCATTAAT
Found at i:27220 original size:23 final size:23
Alignment explanation
Indices: 27194--27238 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
27184 TTAAGCGAAT
*
27194 ATGTTCACGAA-AGTTAAATAAAC
1 ATGTTAACGAATA-TTAAATAAAC
27217 ATGTTAACGAATATTAAATAAA
1 ATGTTAACGAATATTAAATAAA
27239 TATATTCGTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 19 0.95
24 1 0.05
ACGTcount: A:0.51, C:0.09, G:0.11, T:0.29
Consensus pattern (23 bp):
ATGTTAACGAATATTAAATAAAC
Found at i:29095 original size:20 final size:20
Alignment explanation
Indices: 29066--29110 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
29056 GACCTATATA
* *
29066 GTTAAATGCTTACTTGACCG
1 GTTAAATGCTTACATGACCC
* *
29086 GTTAATTGCTTCCATGACCC
1 GTTAAATGCTTACATGACCC
29106 GTTAA
1 GTTAA
29111 CCAATCACTA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.24, C:0.22, G:0.18, T:0.36
Consensus pattern (20 bp):
GTTAAATGCTTACATGACCC
Found at i:29273 original size:29 final size:29
Alignment explanation
Indices: 29231--29312 Score: 119
Period size: 29 Copynumber: 2.8 Consensus size: 29
29221 AAACTAAATT
* *
29231 GATGTCATTACTTACATCATTTAATTAAA
1 GATGTCATTGCTTACATCATTTAAGTAAA
* *
29260 GATGTTATTGCTTACATCATTTAAGTAAT
1 GATGTCATTGCTTACATCATTTAAGTAAA
29289 GATGTCATTGCTTACATCAATTTA
1 GATGTCATTGCTTACATC-ATTTA
29313 GTTAGGTGAG
Statistics
Matches: 47, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
29 42 0.89
30 5 0.11
ACGTcount: A:0.33, C:0.13, G:0.11, T:0.43
Consensus pattern (29 bp):
GATGTCATTGCTTACATCATTTAAGTAAA
Found at i:34025 original size:29 final size:29
Alignment explanation
Indices: 33990--34071 Score: 128
Period size: 29 Copynumber: 2.8 Consensus size: 29
33980 AAACTAAATT
* *
33990 GATGTCATTACTTACATCATTTAATTAAA
1 GATGTCATTGCTTACATCATTTAAGTAAA
*
34019 GATGTCATTGCTTACATCATTTAAGTAAT
1 GATGTCATTGCTTACATCATTTAAGTAAA
34048 GATGTCATTGCTTACATCAATTTA
1 GATGTCATTGCTTACATC-ATTTA
34072 GTTAGGTGAG
Statistics
Matches: 49, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
29 44 0.90
30 5 0.10
ACGTcount: A:0.33, C:0.15, G:0.11, T:0.41
Consensus pattern (29 bp):
GATGTCATTGCTTACATCATTTAAGTAAA
Found at i:41328 original size:106 final size:106
Alignment explanation
Indices: 41141--41332 Score: 287
Period size: 106 Copynumber: 1.8 Consensus size: 106
41131 GACGAAGGGG
* * * * *
41141 CTTCCCAATTTTAGAGCCAATTTCAACTTCATAGCGAAGGATATTGAACTCAAGACAGCATAAGC
1 CTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGAACCCAAGACAACACAAGC
41206 TCAACTTCACAGCGAAGGGGCGGCTGATTGTCAACAAACAA
66 TCAACTTCACAGCGAAGGGGCGGCTGATTGTCAACAAACAA
* * * *
41247 CTTCCCAATTTCAGAGTCAATTTTAACTTCCCAGCGAAGGATATTGGACCCAAGACAACACAAGC
1 CTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGAACCCAAGACAACACAAGC
41312 TCAACTTCAC-GACGAAGGGGC
66 TCAACTTCACAG-CGAAGGGGC
41333 CACCCGCGGT
Statistics
Matches: 76, Mismatches: 9, Indels: 2
0.87 0.10 0.02
Matches are distributed among these distances:
105 1 0.01
106 75 0.99
ACGTcount: A:0.34, C:0.26, G:0.19, T:0.22
Consensus pattern (106 bp):
CTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGAACCCAAGACAACACAAGC
TCAACTTCACAGCGAAGGGGCGGCTGATTGTCAACAAACAA
Found at i:41677 original size:36 final size:37
Alignment explanation
Indices: 41630--41734 Score: 185
Period size: 37 Copynumber: 2.9 Consensus size: 37
41620 ATGCTCACCA
*
41630 TTGTCTCTCTTGAGACACTTTCTCTTGAAACAAA-TT
1 TTGTCTCTCTTGAGACAGTTTCTCTTGAAACAAAGTT
*
41666 TTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAGTT
1 TTGTCTCTCTTGAGACAGTTTCTCTTGAAACAAAGTT
41703 TTGTCTCTCTTGAGACAGTTTCTCTTGAAACA
1 TTGTCTCTCTTGAGACAGTTTCTCTTGAAACA
41735 CCAATCTTCG
Statistics
Matches: 65, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
36 32 0.49
37 33 0.51
ACGTcount: A:0.24, C:0.22, G:0.14, T:0.40
Consensus pattern (37 bp):
TTGTCTCTCTTGAGACAGTTTCTCTTGAAACAAAGTT
Found at i:41860 original size:39 final size:38
Alignment explanation
Indices: 41785--41875 Score: 134
Period size: 39 Copynumber: 2.4 Consensus size: 38
41775 TCGAGACAAC
*
41785 TTCTCTTG-AA-AC-AAAAAAAAAACCTTTGAAATTGT
1 TTCTCTTGAAACACAAAAAAAAAAACCTTTGAAAATGT
41820 TTCTCTTGAAACACAAAAAAGAAAAACCTTTGAAAATGT
1 TTCTCTTGAAACACAAAAAA-AAAAACCTTTGAAAATGT
*
41859 TTCTCATGAAACACAAA
1 TTCTCTTGAAACACAAA
41876 GACCTTCGAG
Statistics
Matches: 50, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
35 8 0.16
36 2 0.04
37 2 0.04
38 5 0.10
39 33 0.66
ACGTcount: A:0.47, C:0.16, G:0.09, T:0.27
Consensus pattern (38 bp):
TTCTCTTGAAACACAAAAAAAAAAACCTTTGAAAATGT
Found at i:47268 original size:21 final size:21
Alignment explanation
Indices: 47242--47310 Score: 138
Period size: 21 Copynumber: 3.3 Consensus size: 21
47232 TCATGTTGCA
47242 TGCATCTTAGACATACTTAGG
1 TGCATCTTAGACATACTTAGG
47263 TGCATCTTAGACATACTTAGG
1 TGCATCTTAGACATACTTAGG
47284 TGCATCTTAGACATACTTAGG
1 TGCATCTTAGACATACTTAGG
47305 TGCATC
1 TGCATC
47311 ACATTCATCA
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 48 1.00
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.33
Consensus pattern (21 bp):
TGCATCTTAGACATACTTAGG
Found at i:48234 original size:106 final size:106
Alignment explanation
Indices: 48044--48341 Score: 499
Period size: 106 Copynumber: 2.8 Consensus size: 106
48034 GACGAAGGAG
* *
48044 CTTCCCAATTTCAGAGCCAATTTCAACTTCATAGCGAAGGATATTGGACTCAAAACAGCACAAGC
1 CTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCAAGACAGCACAAGC
48109 TCAACTTCACAGCGAAGGGGCGGCTGACTGTCAACAAACAA
66 TCAACTTCACAGCGAAGGGGCGGCTGACTGTCAACAAACAA
*
48150 CTTCTCAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCAAGACAGCACAAGC
1 CTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCAAGACAGCACAAGC
48215 TCAACTTCACAGCGAAGGGGCGGCTGACTGTCAACAAACAA
66 TCAACTTCACAGCGAAGGGGCGGCTGACTGTCAACAAACAA
* * * * * *
48256 CTTCCCAATTTCAGAGTCAATTTTAACTTCCCAACGAAGGATATTGGACCCAAGACAACACAAGC
1 CTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCAAGACAGCACAAGC
48321 TCAACTTCAC-GACGAAGGGGC
66 TCAACTTCACAG-CGAAGGGGC
48342 CACCCGCGGT
Statistics
Matches: 181, Mismatches: 10, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
105 1 0.01
106 180 0.99
ACGTcount: A:0.34, C:0.27, G:0.19, T:0.20
Consensus pattern (106 bp):
CTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCAAGACAGCACAAGC
TCAACTTCACAGCGAAGGGGCGGCTGACTGTCAACAAACAA
Found at i:48686 original size:36 final size:37
Alignment explanation
Indices: 48639--48743 Score: 176
Period size: 36 Copynumber: 2.9 Consensus size: 37
48629 ATGCTCACAA
*
48639 TTGTCTCTCTTGAGACACTTTCTCTTGAAACAAA-TT
1 TTGTCTCTCTTGAGACAGTTTCTCTTGAAACAAAGTT
*
48675 TTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAGTT
1 TTGTCTCTCTTGAGACAGTTTCTCTTGAAACAAAGTT
*
48712 TTATCTCTCTTGAGACAGTTTCTCTTGAAACA
1 TTGTCTCTCTTGAGACAGTTTCTCTTGAAACA
48744 CCAATCTTCG
Statistics
Matches: 64, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
36 32 0.50
37 32 0.50
ACGTcount: A:0.25, C:0.22, G:0.13, T:0.40
Consensus pattern (37 bp):
TTGTCTCTCTTGAGACAGTTTCTCTTGAAACAAAGTT
Found at i:48727 original size:37 final size:36
Alignment explanation
Indices: 48642--48743 Score: 168
Period size: 37 Copynumber: 2.8 Consensus size: 36
48632 CTCACAATTG
* *
48642 TCTCTCTTGAGACACTTTCTCTTGAAACAAATTTTG
1 TCTCTCTTGAGACAGTTTCTCTTGAAACAAATTTTA
*
48678 TCTCTCTTGAGACAGTTTCCCTTGAAACAAAGTTTTA
1 TCTCTCTTGAGACAGTTTCTCTTGAAACAAA-TTTTA
48715 TCTCTCTTGAGACAGTTTCTCTTGAAACA
1 TCTCTCTTGAGACAGTTTCTCTTGAAACA
48744 CCAATCTTCG
Statistics
Matches: 61, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
36 29 0.48
37 32 0.52
ACGTcount: A:0.25, C:0.23, G:0.13, T:0.39
Consensus pattern (36 bp):
TCTCTCTTGAGACAGTTTCTCTTGAAACAAATTTTA
Found at i:48869 original size:39 final size:38
Alignment explanation
Indices: 48794--48884 Score: 143
Period size: 39 Copynumber: 2.4 Consensus size: 38
48784 TCGAGACAAC
*
48794 TTCTCTTG-AA-AC-AAAAAAAAAACCTTTGAAATTGT
1 TTCTCTTGAAACACAAAAAAAAAAACCTTTGAAAATGT
48829 TTCTCTTGAAACACAAAAAATAAAAACCTTTGAAAATGT
1 TTCTCTTGAAACACAAAAAA-AAAAACCTTTGAAAATGT
48868 TTCTCTTGAAACACAAA
1 TTCTCTTGAAACACAAA
48885 GACCATCGAG
Statistics
Matches: 51, Mismatches: 1, Indels: 4
0.91 0.02 0.07
Matches are distributed among these distances:
35 8 0.16
36 2 0.04
37 2 0.04
38 5 0.10
39 34 0.67
ACGTcount: A:0.46, C:0.16, G:0.08, T:0.30
Consensus pattern (38 bp):
TTCTCTTGAAACACAAAAAAAAAAACCTTTGAAAATGT
Found at i:50705 original size:32 final size:32
Alignment explanation
Indices: 50632--50697 Score: 132
Period size: 32 Copynumber: 2.1 Consensus size: 32
50622 CAATGCAGAG
50632 AAAGGTTTTTGCTTTTCGTTATTTTAATTTTA
1 AAAGGTTTTTGCTTTTCGTTATTTTAATTTTA
50664 AAAGGTTTTTGCTTTTCGTTATTTTAATTTTA
1 AAAGGTTTTTGCTTTTCGTTATTTTAATTTTA
50696 AA
1 AA
50698 TTTTTTTTTT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.24, C:0.06, G:0.12, T:0.58
Consensus pattern (32 bp):
AAAGGTTTTTGCTTTTCGTTATTTTAATTTTA
Found at i:51913 original size:106 final size:106
Alignment explanation
Indices: 51726--52023 Score: 490
Period size: 106 Copynumber: 2.8 Consensus size: 106
51716 GAAGAAGGGG
*
51726 CTTCCCAATTTCAGAGCCAATTTCAACTTCATAGCGAAGGATATTGGACTCAAGACAGCACAAGC
1 CTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCAAGACAGCACAAGC
*
51791 TCAACTTCACATCGAAGGGGCGGCTGACTGTCAACAAACAA
66 TCAACTTCACAGCGAAGGGGCGGCTGACTGTCAACAAACAA
*
51832 CTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCAAGACAGCACAAGC
1 CTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCAAGACAGCACAAGC
*
51897 TCAATTTCACAGCGAAGGGGCGGCTGACTGTCAACAAACAA
66 TCAACTTCACAGCGAAGGGGCGGCTGACTGTCAACAAACAA
* * * * * *
51938 CTTCCAAATTTCAGAGTCAATTTTAACTTCCCAGCGAAGGATATTGGACCCAAGACAACACAAGC
1 CTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCAAGACAGCACAAGC
52003 TCAACTTCA-AGACGAAGGGGC
66 TCAACTTCACAG-CGAAGGGGC
52024 CACCCGCGGT
Statistics
Matches: 179, Mismatches: 12, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
105 2 0.01
106 177 0.99
ACGTcount: A:0.35, C:0.26, G:0.19, T:0.20
Consensus pattern (106 bp):
CTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCAAGACAGCACAAGC
TCAACTTCACAGCGAAGGGGCGGCTGACTGTCAACAAACAA
Found at i:52366 original size:21 final size:21
Alignment explanation
Indices: 52341--52406 Score: 63
Period size: 21 Copynumber: 3.4 Consensus size: 21
52331 TGAGACACTT
52341 TCTCTTGAAACAAATTTTGTC
1 TCTCTTGAAACAAATTTTGTC
* *
52362 TCTCTTGAGAC--A-GTT-T-
1 TCTCTTGAAACAAATTTTGTC
52378 TC-CTTGAAACAAAGTTTTGTC
1 TCTCTTGAAACAAA-TTTTGTC
52399 TCTCTTGA
1 TCTCTTGA
52407 GACAGTTTCT
Statistics
Matches: 34, Mismatches: 4, Indels: 13
0.67 0.08 0.25
Matches are distributed among these distances:
15 7 0.21
16 2 0.06
17 2 0.06
18 2 0.06
19 3 0.09
20 1 0.03
21 12 0.35
22 5 0.15
ACGTcount: A:0.24, C:0.20, G:0.14, T:0.42
Consensus pattern (21 bp):
TCTCTTGAAACAAATTTTGTC
Found at i:52368 original size:36 final size:37
Alignment explanation
Indices: 52321--52425 Score: 178
Period size: 37 Copynumber: 2.9 Consensus size: 37
52311 ATTCTCACCA
*
52321 TTGTCTCTCTTGAGACACTTTCTCTTGAAACAAA-TT
1 TTGTCTCTCTTGAGACAGTTTCTCTTGAAACAAAGTT
52357 TTGTCTCTCTTGAGACAGTTT-TCCTTGAAACAAAGTT
1 TTGTCTCTCTTGAGACAGTTTCT-CTTGAAACAAAGTT
52394 TTGTCTCTCTTGAGACAGTTTCTCTTGAAACA
1 TTGTCTCTCTTGAGACAGTTTCTCTTGAAACA
52426 CCAATCTTCG
Statistics
Matches: 65, Mismatches: 1, Indels: 5
0.92 0.01 0.07
Matches are distributed among these distances:
35 1 0.02
36 31 0.48
37 32 0.49
38 1 0.02
ACGTcount: A:0.24, C:0.21, G:0.14, T:0.41
Consensus pattern (37 bp):
TTGTCTCTCTTGAGACAGTTTCTCTTGAAACAAAGTT
Found at i:52480 original size:33 final size:33
Alignment explanation
Indices: 52443--52563 Score: 125
Period size: 33 Copynumber: 3.6 Consensus size: 33
52433 TCGAAATTGT
* *
52443 TTCTCTTGAAATACAAAAAACCTTCGAGACAGC
1 TTCTCTTGAAACACAAAAAACCTTCGAAACAGC
* * ** *
52476 TTCTCTTGAAACAAAAAAAACCTTTGAAATTGT
1 TTCTCTTGAAACACAAAAAACCTTCGAAACAGC
* ** *
52509 TTCTCTTGAAACACAAAAAAAACCTTTGAAATTGT
1 TTCTCTTGAAACAC--AAAAAACCTTCGAAACAGC
52544 TTCTCTTGAAACACAAAAAA
1 TTCTCTTGAAACACAAAAAA
52564 GAAAACCTTT
Statistics
Matches: 78, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
33 45 0.58
35 33 0.42
ACGTcount: A:0.43, C:0.19, G:0.09, T:0.29
Consensus pattern (33 bp):
TTCTCTTGAAACACAAAAAACCTTCGAAACAGC
Found at i:52483 original size:63 final size:64
Alignment explanation
Indices: 52405--52528 Score: 169
Period size: 66 Copynumber: 1.9 Consensus size: 64
52395 TGTCTCTCTT
* ** * *
52405 GAGACAGTTTCTCTTGAAAC-ACCAATCTTCGAAATTGTTTCTCTTGAAATACAAAAAACCTTC
1 GAGACAGCTTCTCTTGAAACAAAAAACCTTCGAAATTGTTTCTCTTGAAACACAAAAAACCTTC
*
52468 GAGACAGCTTCTCTTGAAACAAAAAAAACCTTTGAAATTGTTTCTCTTGAAACACAAAAAA
1 GAGACAGCTTCTCTTGAAAC--AAAAAACCTTCGAAATTGTTTCTCTTGAAACACAAAAAA
52529 AACCTTTGAA
Statistics
Matches: 52, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
63 19 0.37
66 33 0.63
ACGTcount: A:0.40, C:0.20, G:0.11, T:0.29
Consensus pattern (64 bp):
GAGACAGCTTCTCTTGAAACAAAAAACCTTCGAAATTGTTTCTCTTGAAACACAAAAAACCTTC
Found at i:52532 original size:35 final size:35
Alignment explanation
Indices: 52435--52598 Score: 201
Period size: 35 Copynumber: 4.7 Consensus size: 35
52425 ACCAATCTTC
* *
52435 GAAATTGTTTCTCTTGAAATAC--AAAAAACCTTC
1 GAAATTGTTTCTCTTGAAACACAAAAAAAACCTTT
* ** *
52468 GAGACAGCTTCTCTTG-AA-ACAAAAAAAACCTTT
1 GAAATTGTTTCTCTTGAAACACAAAAAAAACCTTT
52501 GAAATTGTTTCTCTTGAAACACAAAAAAAACCTTT
1 GAAATTGTTTCTCTTGAAACACAAAAAAAACCTTT
52536 GAAATTGTTTCTCTTGAAACACAAAAAAGAAAACCTTT
1 GAAATTGTTTCTCTTGAAACAC--AAAA-AAAACCTTT
* *
52574 GAAAATGTTTCTCATGAAACACAAA
1 GAAATTGTTTCTCTTGAAACACAAA
52599 GACCTTCGAG
Statistics
Matches: 113, Mismatches: 11, Indels: 11
0.84 0.08 0.08
Matches are distributed among these distances:
31 2 0.02
32 2 0.02
33 34 0.30
34 2 0.02
35 37 0.33
36 3 0.03
37 4 0.04
38 29 0.26
ACGTcount: A:0.43, C:0.18, G:0.10, T:0.29
Consensus pattern (35 bp):
GAAATTGTTTCTCTTGAAACACAAAAAAAACCTTT
Found at i:54406 original size:7 final size:7
Alignment explanation
Indices: 54357--54388 Score: 57
Period size: 7 Copynumber: 4.7 Consensus size: 7
54347 GCTTTTCGTT
54357 ATTTT-A
1 ATTTTAA
54363 ATTTTAA
1 ATTTTAA
54370 ATTTTAA
1 ATTTTAA
54377 ATTTTAA
1 ATTTTAA
54384 ATTTT
1 ATTTT
54389 TTTGTTCTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 5 0.20
7 20 0.80
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (7 bp):
ATTTTAA
Found at i:55253 original size:15 final size:16
Alignment explanation
Indices: 55230--55264 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
55220 TTGTACCCAA
55230 TATTCATTTTTAA-AT
1 TATTCATTTTTAATAT
*
55245 TATTTATTTTTAATAT
1 TATTCATTTTTAATAT
55261 TATT
1 TATT
55265 AGTTTAGATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 12 0.67
16 6 0.33
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.66
Consensus pattern (16 bp):
TATTCATTTTTAATAT
Found at i:56199 original size:16 final size:16
Alignment explanation
Indices: 56180--56214 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
56170 AGAACCAATG
*
56180 AAATAAGGAAAATAAA
1 AAATAAAGAAAATAAA
*
56196 AAATAAAGAAGATAAA
1 AAATAAAGAAAATAAA
56212 AAA
1 AAA
56215 AGTGAATATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.77, C:0.00, G:0.11, T:0.11
Consensus pattern (16 bp):
AAATAAAGAAAATAAA
Found at i:57733 original size:2 final size:2
Alignment explanation
Indices: 57728--57800 Score: 121
Period size: 2 Copynumber: 36.5 Consensus size: 2
57718 CAAAAAAAAA
57728 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
57770 AT AT AT AT AT AT AT AGT AT GT AT AT -T AT AT A
1 AT AT AT AT AT AT AT A-T AT AT AT AT AT AT AT A
57801 ATAGTTAGCA
Statistics
Matches: 67, Mismatches: 2, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
1 1 0.01
2 64 0.96
3 2 0.03
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.49
Consensus pattern (2 bp):
AT
Found at i:58537 original size:106 final size:104
Alignment explanation
Indices: 58333--59951 Score: 2308
Period size: 106 Copynumber: 15.3 Consensus size: 104
58323 TGTTTCGAGG
** * * * * *
58333 CCAATATCCTTCGCCGTGAAGTTGAAATTGACTCTGAAACTGGTGATGGTCTGTTGACAACCAGC
1 CCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGG-GAAGTTTTGTTGACAACCAGC
* * * *
58398 CGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTCGAGT
65 GGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGT
* * * * * * *
58438 CCAATATCCTTTGCTGTGAAGTTGAGATTGGCTCTGAAACTGGGTAACGGTTTATTGACAACCAA
1 CCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGG-AA-GTTTTGTTGACAACCAG
*
58503 CGGTCCCTTCGTCGTGAAGTTGAACTTGCATTGTCTGGAGT
64 CGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGT
58544 CCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGG-AGTTGTTTGTTGACAACCA
1 CCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTG-GGAAG-T-TTTGTTGACAACCA
* * *
58608 GCGGTCCCTTCGTCGTGAAGTTGAACTTTCATTGTCTTGAGT
63 GCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGT
* *
58650 CCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAAGCAG
1 CCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAG-T-TTTGTTGACAACCAG
* * *
58715 TGGTCCCTTCTTCGTGAAGTTGAACTTGCGTTGTCTGGGGT
64 CGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGT
*
58756 CCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTTTTTGTTGACAACCAG
1 CCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAG--TTTTGTTGACAACCAG
*
58821 CGGTCCCTTCGTCGTGAAGTTGAACTTGTGTTGTCTGGAGT
64 CGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGT
* * * *
58862 CCAATATCCTTCGATGTGAAGTTGAAATTGGCTCCGAAACTGGGAAATTATTTGTTGACAACCAG
1 CCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGG-AAGT-TTTGTTGACAACCAG
* * * *
58927 TGGTCCCTTCGTCGTGAAGTTAAACTTGTGTTGTCTCGAGT
64 CGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGT
* *
58968 CCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCCGAAATTGGGAAGTTGTTGTTGACAACCAGC
1 CCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTT-TTGTTGACAACCAGC
*
59033 GGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTAT-GAGGT
65 GGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGA-GT
* * *
59073 CCAATATCATTCGTTGTAAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTGTTGACAACCAGC
1 CCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTT-TTGTTGACAACCAGC
* * *
59138 GATCCCTTCGTCGTTAAGTTGAACTTGCGTTGTCTGGGGT
65 GGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGT
*
59178 CCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTTTTTGTTGACAACCAG
1 CCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAG--TTTTGTTGACAACCAG
* * *
59243 CGTTCCCTTCGTCGTGAAGATGAACTTGCGTTATCTGGAGT
64 CGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGT
* *
59284 CCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCCGAAATTGGGAAATTGTTTGTTGACAACCAG
1 CCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGG-AAGT-TTTGTTGACAACCAG
* *
59349 CGGTCCCTTTGTCGTGAAGTTGAACTTGCGTTGTCTCGAGT
64 CGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGT
* *
59390 CCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCCGAAATTGGGAAGTTGTTGTTGACAACCAGC
1 CCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTT-TTGTTGACAACCAGC
*
59455 GGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTAT-GAGGT
65 GGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGA-GT
* * *
59495 CCAATATCATTCGTTGTAAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTGTTGACAACCAGC
1 CCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTT-TTGTTGACAACCAGC
* *
59560 GATCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGGGT
65 GGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGT
*
59600 CCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTTTTTGTTGACAACCAG
1 CCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAG--TTTTGTTGACAACCAG
* * *
59665 CGTTCCCTTCGTCGTGAAGATGAACTTGCGTTATCTGGAGT
64 CGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGT
* *
59706 CCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCCGAAATTGGGAAATTGTTTGTTGACAACCAG
1 CCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGG-AAGT-TTTGTTGACAACCAG
* *
59771 CGGTCCCTTTGTCGTGAAGTTGAACTTGCGTTGTCTCGAGT
64 CGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGT
* *
59812 CCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCCGAAATTGGGAAGTTGTTGTTGACAACCAGC
1 CCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTT-TTGTTGACAACCAGC
*
59877 GGTCCCTTCGTCGTGAAGTTTAACTTGCGTTGTCTGGAGT
65 GGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGT
*
59917 CCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCT
1 CCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCT
59952 AGGTAAAACC
Statistics
Matches: 1382, Mismatches: 108, Indels: 48
0.90 0.07 0.03
Matches are distributed among these distances:
104 9 0.01
105 518 0.37
106 841 0.61
107 14 0.01
ACGTcount: A:0.22, C:0.19, G:0.25, T:0.34
Consensus pattern (104 bp):
CCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTTTGTTGACAACCAGCG
GTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGT
Found at i:59282 original size:422 final size:422
Alignment explanation
Indices: 58333--59951 Score: 2629
Period size: 422 Copynumber: 3.8 Consensus size: 422
58323 TGTTTCGAGG
** * * * ** *
58333 CCAATATCCTTCGCCGTGAAGTTGAAATTGACTCTGAAACTG-G-TGATGGTCTGTTGACAACCA
1 CCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAG-TTTTTTGTTGACAACCA
* * * * * * *
58396 GCCG-TCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTCGAGTCCAATATCCTTTGCTGTGAAGT
65 G-CGTTCCCTTCGTCGTGAAGATGAACTTGCGTTATCTGGAGTCCAATATCCTTCGTTGTGAAGT
* * * ** * *
58460 TGAGATTGGCTCTGAAACTGGGTAACGGTTTATTGACAACCAACGGTCCCTTCGTCGTGAAGTTG
129 TGAAATTGGCTCCGAAACTGGGAAATTGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTG
* * * *
58525 AACTTGCATTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGG-
194 AACTTGCGTTGTCTCGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCCGAAATTG-GGA
* * *
58589 AGTTGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTTCATTGTCTTGA-GTCCA
258 AGTTG-TTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGT-ATGAGGTCCA
* * * * * *
58653 ATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAAGCAGTGG
321 ATATCATTCGCTGTAAAGTTGAAATTGGCTCTGAAATTGAGAAGTTG-TTGTTGACAACCAGCGA
*
58718 TCCCTTCTTCGTGAAGTTGAACTTGCGTTGTCTGGGGT
385 TCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGGGT
58756 CCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTTTTTGTTGACAACCAG
1 CCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTTTTTGTTGACAACCAG
* * * * *
58821 CGGTCCCTTCGTCGTGAAGTTGAACTTGTGTTGTCTGGAGTCCAATATCCTTCGATGTGAAGTTG
66 CGTTCCCTTCGTCGTGAAGATGAACTTGCGTTATCTGGAGTCCAATATCCTTCGTTGTGAAGTTG
* * *
58886 AAATTGGCTCCGAAACTGGGAAATTATTTGTTGACAACCAGTGGTCCCTTCGTCGTGAAGTTAAA
131 AAATTGGCTCCGAAACTGGGAAATTGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAA
*
58951 CTTGTGTTGTCTCGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCCGAAATTGGGAAGT
196 CTTGCGTTGTCTCGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCCGAAATTGGGAAGT
59016 TGTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTATGAGGTCCAATATC
261 TGTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTATGAGGTCCAATATC
*
59081 ATTCGTTGTAAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTGTTGACAACCAGCGATCCCTT
326 ATTCGCTGTAAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTGTTGACAACCAGCGATCCCTT
*
59146 CGTCGTTAAGTTGAACTTGCGTTGTCTGGGGT
391 CGTCGTGAAGTTGAACTTGCGTTGTCTGGGGT
59178 CCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTTTTTGTTGACAACCAG
1 CCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTTTTTGTTGACAACCAG
59243 CGTTCCCTTCGTCGTGAAGATGAACTTGCGTTATCTGGAGTCCAATATCCTTCGTTGTGAAGTTG
66 CGTTCCCTTCGTCGTGAAGATGAACTTGCGTTATCTGGAGTCCAATATCCTTCGTTGTGAAGTTG
* *
59308 AAATTGGCTCCGAAATTGGGAAATTGTTTGTTGACAACCAGCGGTCCCTTTGTCGTGAAGTTGAA
131 AAATTGGCTCCGAAACTGGGAAATTGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAA
59373 CTTGCGTTGTCTCGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCCGAAATTGGGAAGT
196 CTTGCGTTGTCTCGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCCGAAATTGGGAAGT
59438 TGTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTATGAGGTCCAATATC
261 TGTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTATGAGGTCCAATATC
*
59503 ATTCGTTGTAAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTGTTGACAACCAGCGATCCCTT
326 ATTCGCTGTAAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTGTTGACAACCAGCGATCCCTT
59568 CGTCGTGAAGTTGAACTTGCGTTGTCTGGGGT
391 CGTCGTGAAGTTGAACTTGCGTTGTCTGGGGT
59600 CCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTTTTTGTTGACAACCAG
1 CCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTTTTTGTTGACAACCAG
59665 CGTTCCCTTCGTCGTGAAGATGAACTTGCGTTATCTGGAGTCCAATATCCTTCGTTGTGAAGTTG
66 CGTTCCCTTCGTCGTGAAGATGAACTTGCGTTATCTGGAGTCCAATATCCTTCGTTGTGAAGTTG
* *
59730 AAATTGGCTCCGAAATTGGGAAATTGTTTGTTGACAACCAGCGGTCCCTTTGTCGTGAAGTTGAA
131 AAATTGGCTCCGAAACTGGGAAATTGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAA
59795 CTTGCGTTGTCTCGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCCGAAATTGGGAAGT
196 CTTGCGTTGTCTCGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCCGAAATTGGGAAGT
* *
59860 TGTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTTAACTTGCGTTGTCTG-GAGTCCAATAT
261 TGTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTATGAG-GTCCAATAT
* *
59924 CCTTCGCTGTGAAGTTGAAATTGGCTCT
325 CATTCGCTGTAAAGTTGAAATTGGCTCT
59952 AGGTAAAACC
Statistics
Matches: 1134, Mismatches: 56, Indels: 13
0.94 0.05 0.01
Matches are distributed among these distances:
421 1 0.00
422 808 0.71
423 136 0.12
424 188 0.17
425 1 0.00
ACGTcount: A:0.22, C:0.19, G:0.25, T:0.34
Consensus pattern (422 bp):
CCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTTTTTGTTGACAACCAG
CGTTCCCTTCGTCGTGAAGATGAACTTGCGTTATCTGGAGTCCAATATCCTTCGTTGTGAAGTTG
AAATTGGCTCCGAAACTGGGAAATTGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAA
CTTGCGTTGTCTCGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCCGAAATTGGGAAGT
TGTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTATGAGGTCCAATATC
ATTCGCTGTAAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTGTTGACAACCAGCGATCCCTT
CGTCGTGAAGTTGAACTTGCGTTGTCTGGGGT
Found at i:60697 original size:6 final size:6
Alignment explanation
Indices: 60686--60735 Score: 54
Period size: 6 Copynumber: 8.7 Consensus size: 6
60676 CCTTGTTTTC
60686 TTTCTT TTTC-- TTTCGTT TTT-TT TTCTCTT TTTCTT TTTCTT TTT-TT
1 TTTCTT TTTCTT TTTC-TT TTTCTT TT-TCTT TTTCTT TTTCTT TTTCTT
60732 TTTC
1 TTTC
60736 AATTTAGGGC
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
4 4 0.11
5 9 0.24
6 18 0.47
7 7 0.18
ACGTcount: A:0.00, C:0.16, G:0.02, T:0.82
Consensus pattern (6 bp):
TTTCTT
Found at i:60728 original size:23 final size:23
Alignment explanation
Indices: 60688--60735 Score: 69
Period size: 25 Copynumber: 2.0 Consensus size: 23
60678 TTGTTTTCTT
60688 TCTTTTTCTTTCGTTTTTTTTTC
1 TCTTTTTCTTTCGTTTTTTTTTC
*
60711 TCTTTTTCTTTTTCTTTTTTTTTTC
1 TCTTTTTC--TTTCGTTTTTTTTTC
60736 AATTTAGGGC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 8 0.36
25 14 0.64
ACGTcount: A:0.00, C:0.17, G:0.02, T:0.81
Consensus pattern (23 bp):
TCTTTTTCTTTCGTTTTTTTTTC
Found at i:60791 original size:16 final size:15
Alignment explanation
Indices: 60772--60801 Score: 51
Period size: 15 Copynumber: 1.9 Consensus size: 15
60762 ACCCTAAACG
60772 TTTTTCTCTTTTTTCT
1 TTTTTCT-TTTTTTCT
60788 TTTTTCTTTTTTTC
1 TTTTTCTTTTTTTC
60802 AACTTAGGAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (15 bp):
TTTTTCTTTTTTTCT
Found at i:71160 original size:16 final size:16
Alignment explanation
Indices: 71139--71173 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
71129 ATAACTAATG
*
71139 AAATAAGGAAAATAAA
1 AAATAAAGAAAATAAA
*
71155 AAATAAAGAAGATAAA
1 AAATAAAGAAAATAAA
71171 AAA
1 AAA
71174 AGTGAATATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.77, C:0.00, G:0.11, T:0.11
Consensus pattern (16 bp):
AAATAAAGAAAATAAA
Found at i:71216 original size:23 final size:24
Alignment explanation
Indices: 71185--71233 Score: 66
Period size: 23 Copynumber: 2.1 Consensus size: 24
71175 GTGAATATAA
*
71185 AAATGAATAGAAT-AA-AAAGAAAT
1 AAATAAATAGAATGAAGAAA-AAAT
71208 AAATAAATAGAATGAAGAAAAAAT
1 AAATAAATAGAATGAAGAAAAAAT
71232 AA
1 AA
71234 TAACACTAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
23 12 0.52
24 8 0.35
25 3 0.13
ACGTcount: A:0.71, C:0.00, G:0.12, T:0.16
Consensus pattern (24 bp):
AAATAAATAGAATGAAGAAAAAAT
Found at i:71408 original size:2 final size:2
Alignment explanation
Indices: 71401--71483 Score: 87
Period size: 2 Copynumber: 41.5 Consensus size: 2
71391 ACCGAAAGTA
* * * ** *
71401 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AG A- AA AA AT GGG AA
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -AT AT
*
71443 AT AT AA AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
71484 ATACTAGTGA
Statistics
Matches: 70, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
1 1 0.01
2 69 0.99
ACGTcount: A:0.54, C:0.00, G:0.05, T:0.41
Consensus pattern (2 bp):
AT
Found at i:72788 original size:2 final size:2
Alignment explanation
Indices: 72714--72771 Score: 68
Period size: 2 Copynumber: 30.0 Consensus size: 2
72704 CCTGTACACA
* *
72714 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A- AA AGT AT GT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A-T AT AT
72756 AT AT -T AT AT A- AT AT AT
1 AT AT AT AT AT AT AT AT AT
72772 TTAGCAAATA
Statistics
Matches: 49, Mismatches: 3, Indels: 8
0.82 0.05 0.13
Matches are distributed among these distances:
1 3 0.06
2 45 0.92
3 1 0.02
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (2 bp):
AT
Found at i:74144 original size:75 final size:75
Alignment explanation
Indices: 74013--74191 Score: 182
Period size: 75 Copynumber: 2.4 Consensus size: 75
74003 TGATTTGGGT
* * *
74013 TTAATATTATGGTTTGAGT-TTTAAGATTTAACACTTTAATATTATGATTTTATTATGGATTTCA
1 TTAATATTATGGTTTGAATCTTGAA-ATTTAACACTTTAATATTATGATTGTATTATGGATTTCA
* *
74077 TTATTCCAGAG
65 TTATTCCAAAC
* * * * *
74088 TTAATATTATGGTTTGAATCTTGAAATTTAACATTTTAATATTGTAGCTTGT-TTATGTATTTTA
1 TTAATATTATGGTTTGAATCTTGAAATTTAACACTTTAATATTAT-GATTGTATTATGGATTTCA
* *
74152 TTGTTCTAAAC
65 TTATTCCAAAC
* * * *
74163 TTAATATTGTTGTTTGACTCTTGATATTT
1 TTAATATTATGGTTTGAATCTTGAAATTT
74192 GACTTTATTT
Statistics
Matches: 86, Mismatches: 16, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
75 78 0.91
76 8 0.09
ACGTcount: A:0.28, C:0.07, G:0.13, T:0.52
Consensus pattern (75 bp):
TTAATATTATGGTTTGAATCTTGAAATTTAACACTTTAATATTATGATTGTATTATGGATTTCAT
TATTCCAAAC
Found at i:76693 original size:3 final size:3
Alignment explanation
Indices: 76685--76729 Score: 54
Period size: 3 Copynumber: 14.0 Consensus size: 3
76675 TTGTAATATT
*
76685 TAA TAA TAA TAAA TAAA TAA TAA TAA TAA TGA TAAA TAA TAA TAA
1 TAA TAA TAA T-AA T-AA TAA TAA TAA TAA TAA T-AA TAA TAA TAA
76730 AAACAAACTG
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
3 29 0.76
4 9 0.24
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:76719 original size:23 final size:22
Alignment explanation
Indices: 76685--76729 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 22
76675 TTGTAATATT
76685 TAATAATAATAAATAAATAATAA
1 TAATAATAATAAAT-AATAATAA
*
76708 TAATAATGATAAATAATAATAA
1 TAATAATAATAAATAATAATAA
76730 AAACAAACTG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
22 8 0.38
23 13 0.62
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (22 bp):
TAATAATAATAAATAATAATAA
Found at i:76986 original size:76 final size:76
Alignment explanation
Indices: 76860--80068 Score: 5636
Period size: 76 Copynumber: 42.4 Consensus size: 76
76850 GAAATGTTGA
* * * * *
76860 AAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGTTTTGAAAACATCAAAAAGCTTCCGA
1 AAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
76925 AGGCTTTTTGG
66 AGGCTTTTTGG
*
76936 AAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGTTCCCGA
1 AAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
77001 AGGCTTTTTGG
66 AGGCTTTTTGG
77012 AAACATCATGCACTGCAGGACTTACAGATGA-CCTGAAGGC-TTGAAAACATCAAAAAGCTCCCG
1 AAACATCATGCACTGCAGGACTTACAGATGACCCT-AAGGCTTTGAAAACATCAAAAAGCTCCCG
77075 AAGGCTTTTTGG
65 AAGGCTTTTTGG
77087 AAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
1 AAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
77152 AGGCTTTTTGG
66 AGGCTTTTTGG
* *
77163 AAACATCATGCACTGCAAGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAACTCCCGA
1 AAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
77228 AGGCTTTTTGG
66 AGGCTTTTTGG
* *
77239 AAACATCATGCACTACAGGACTTACAGATGACCCGAAGGC-TTGAAAACATCAAAAAGCTCCCGA
1 AAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
*
77303 AGGCTTATTGG
66 AGGCTTTTTGG
*
77314 AAACATCATGCACTGCAGGACTTACAGATGACCCTAACGCTTTGAAAACATCAAAAAGCTCCCGA
1 AAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
77379 AGGCTTTTTGG
66 AGGCTTTTTGG
* *
77390 AAACATCATGCACTACAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCTCGA
1 AAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
77455 AGGCTTTTTGG
66 AGGCTTTTTGG
* *
77466 AAACATCATGAACTGTAGGACTTACAGATGACCCTAA-GCTTTGAAAACATCAAAAAGCTCCCGA
1 AAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
77530 AGGCTTTTTGG
66 AGGCTTTTTGG
* *
77541 AAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATAAAAAAGCTCCCGA
1 AAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
77606 AGGCTTTTTGG
66 AGGCTTTTTGG
*
77617 AAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAACTCCCGA
1 AAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
77682 AGGCTTTTTGG
66 AGGCTTTTTGG
77693 AAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGC-TTGAAAACATCAAAAAGCTCCCGA
1 AAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
77757 AGGCTTTTTGG
66 AGGCTTTTTGG
* * *
77768 AAACATCATGCACTGTAGGACTTACAGATGACTCGAAGGCTTTGAAAACATCAAAAAGCTCCCGA
1 AAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
77833 AGGCTTTTTGG
66 AGGCTTTTTGG
* * *
77844 AAACATCATGCACTGCAGGACTTACAGATGACCCTAATGTTTTGAAAACATCAAAAAGTTCCCGA
1 AAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
77909 AGGCTTTTTGG
66 AGGCTTTTTGG
*
77920 AAACATCATGCACTGCAGGACTTACAGATGACCCGAAGGC-TTGAAAACATCAAAAAGCTCCCGA
1 AAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
77984 AGGCTTTTTGG
66 AGGCTTTTTGG
*
77995 AAACATCATGCACTGCAGGACTTACATATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
1 AAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
78060 AGGCTTTTTGG
66 AGGCTTTTTGG
* *
78071 AAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACAACAAAAAACTCCCGA
1 AAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
78136 AGGCTTTTTGG
66 AGGCTTTTTGG
* *
78147 AAACATCATGCACTGCAGGACTTACAGATGACCCGAAGGC-TTGAAAACATCAAAAAGCTCCCTA
1 AAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
*
78211 AGGCTTATTGG
66 AGGCTTTTTGG
* *
78222 AAACATCATGCACTGCAGGACTTACAGATGACCCTAACGCTTTGAAAATATCAAAAAGCTCCCGA
1 AAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
78287 AGGCTTTTTGG
66 AGGCTTTTTGG
*
78298 AAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCTCGA
1 AAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
78363 AGGCTTTTTGG
66 AGGCTTTTTGG
* *
78374 AAACATCATGCACTGTAGGACTGACAGATGACCCTAA-GCTTTGAAAACATCAAAAAGCTCCCGA
1 AAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
78438 AGGCTTTTTGG
66 AGGCTTTTTGG
* * *
78449 AAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTAAAAACATAAAAAAGCTCCCGA
1 AAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
78514 AGGCTTTTTGG
66 AGGCTTTTTGG
*
78525 AAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAACTCCCGA
1 AAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
78590 AGGCTTTTTGG
66 AGGCTTTTTGG
*
78601 AAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGC-TTGAAAACATCAAAAAACTCCCGA
1 AAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
78665 AGGCTTTTTGG
66 AGGCTTTTTGG
* * *
78676 AAACATCATGCACTGTAGGACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAATCTCCCGA
1 AAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
78741 AGGCTTTTTGG
66 AGGCTTTTTGG
* *
78752 AAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGTTTTGAAAACATCAAAAAGCTCTCGA
1 AAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
78817 AGGCTTTTTGG
66 AGGCTTTTTGG
* *
78828 AAACATCATGCACTGTAGGACTTACAAATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
1 AAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
78893 AGGCTTTTTGG
66 AGGCTTTTTGG
*
78904 AAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAACTCCCGA
1 AAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
78969 AGGCTTTTTGG
66 AGGCTTTTTGG
*
78980 AAACATCATGCACTGCAGGACTTACAGATGACCCGAAGGC-TTGAAAACATCAAAAAGCTCCCGA
1 AAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
*
79044 AGGCTTATTGG
66 AGGCTTTTTGG
*
79055 AAACATCATGCACTGCAGGACTTACAGATGACCCTAACGCTTTGAAAACATCAAAAAGCTCCCGA
1 AAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
79120 AGGCTTTTTGG
66 AGGCTTTTTGG
*
79131 AAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCTCGA
1 AAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
79196 AGGCTTTTTGG
66 AGGCTTTTTGG
*
79207 AAACATCATGCACTGTAGGACTTACAGATGACCCTAA-GCTTTGAAAACATCAAAAAGCTCCCGA
1 AAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
79271 AGGCTTTTTGG
66 AGGCTTTTTGG
* *
79282 AAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATAAAAAAGCTCCCGA
1 AAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
79347 AGGCTTTTTGG
66 AGGCTTTTTGG
*
79358 AAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAACTCCCGA
1 AAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
79423 AGGCTTTTTGG
66 AGGCTTTTTGG
*
79434 AAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
1 AAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
79499 AGGCTTTTTGG
66 AGGCTTTTTGG
*
79510 AAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAACTCCCGA
1 AAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
79575 AGGCTTTTTGG
66 AGGCTTTTTGG
*
79586 AAACATCATGCACTGCAGGACTTACAGATGACCCGAAGGC-TTGAAAACATCAAAAAGCTCCCGA
1 AAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
*
79650 AGGCTTATTGG
66 AGGCTTTTTGG
*
79661 AAACATCATGCACTGCAGGACTTACAGATGACCCTAACGCTTTGAAAACATCAAAAAGCTCCCGA
1 AAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
79726 AGGCTTTTTGG
66 AGGCTTTTTGG
* *
79737 AAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCTCGA
1 AAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
79802 AGGCTTTTTGG
66 AGGCTTTTTGG
* *
79813 AAACATCATGCACTGTAGGACTTACAGATGACCCTAA-GCTTTGAAAACATCAAAAAACTCCCGA
1 AAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
79877 AGGCTTTTTGG
66 AGGCTTTTTGG
* *
79888 AAACATCATGCATTGCAGGACTTACAGATGACCGTAAGGC-TTGAAAACATCAAAAAGCTCCCGA
1 AAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
* *
79952 AGGCTTATTGT
66 AGGCTTTTTGG
* *
79963 AAACATCATGCACTGCAGGACTTACAGATGAACCTAAGGCTTTTAAAACATCAAAAAGCTCCCGA
1 AAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
80028 AGGCTTTTTGG
66 AGGCTTTTTGG
* *
80039 AAACACCATGCACTACAGGACTTACAGATG
1 AAACATCATGCACTGCAGGACTTACAGATG
80069 TAGGAAATAG
Statistics
Matches: 2988, Mismatches: 130, Indels: 30
0.95 0.04 0.01
Matches are distributed among these distances:
75 929 0.31
76 2059 0.69
ACGTcount: A:0.35, C:0.23, G:0.19, T:0.23
Consensus pattern (76 bp):
AAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
AGGCTTTTTGG
Found at i:77260 original size:227 final size:228
Alignment explanation
Indices: 76860--80068 Score: 5636
Period size: 227 Copynumber: 14.1 Consensus size: 228
76850 GAAATGTTGA
* * * * *
76860 AAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGTTTTGAAAACATCAAAAAGCTTCCGA
1 AAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
76925 AGGCTTTTTGGAAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAA
66 AGGCTTTTTGGAAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAA
*
76990 AAAGTTCCCGAAGGCTTTTTGGAAACATCATGCACTGCAGGACTTACAGATGA-CCTGAAGGC-T
131 AAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGCAGGACTTACAGATGACCCT-AAGGCTT
77053 TGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGG
195 TGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGG
77087 AAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
1 AAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
*
77152 AGGCTTTTTGGAAACATCATGCACTGCAAGACTTACAGATGACCCTAAGGCTTTGAAAACATCAA
66 AGGCTTTTTGGAAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAA
* * *
77217 AAAACTCCCGAAGGCTTTTTGGAAACATCATGCACTACAGGACTTACAGATGACCCGAAGGC-TT
131 AAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTT
*
77281 GAAAACATCAAAAAGCTCCCGAAGGCTTATTGG
196 GAAAACATCAAAAAGCTCCCGAAGGCTTTTTGG
*
77314 AAACATCATGCACTGCAGGACTTACAGATGACCCTAACGCTTTGAAAACATCAAAAAGCTCCCGA
1 AAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
*
77379 AGGCTTTTTGGAAACATCATGCACTACAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAA
66 AGGCTTTTTGGAAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAA
* * *
77444 AAAGCTCTCGAAGGCTTTTTGGAAACATCATGAACTGTAGGACTTACAGATGACCCTAA-GCTTT
131 AAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTT
77508 GAAAACATCAAAAAGCTCCCGAAGGCTTTTTGG
196 GAAAACATCAAAAAGCTCCCGAAGGCTTTTTGG
* *
77541 AAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATAAAAAAGCTCCCGA
1 AAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
77606 AGGCTTTTTGGAAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAA
66 AGGCTTTTTGGAAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAA
*
77671 AAAACTCCCGAAGGCTTTTTGGAAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGC-TT
131 AAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTT
77735 GAAAACATCAAAAAGCTCCCGAAGGCTTTTTGG
196 GAAAACATCAAAAAGCTCCCGAAGGCTTTTTGG
* * *
77768 AAACATCATGCACTGTAGGACTTACAGATGACTCGAAGGCTTTGAAAACATCAAAAAGCTCCCGA
1 AAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
* *
77833 AGGCTTTTTGGAAACATCATGCACTGCAGGACTTACAGATGACCCTAATGTTTTGAAAACATCAA
66 AGGCTTTTTGGAAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAA
* *
77898 AAAGTTCCCGAAGGCTTTTTGGAAACATCATGCACTGCAGGACTTACAGATGACCCGAAGGC-TT
131 AAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTT
77962 GAAAACATCAAAAAGCTCCCGAAGGCTTTTTGG
196 GAAAACATCAAAAAGCTCCCGAAGGCTTTTTGG
*
77995 AAACATCATGCACTGCAGGACTTACATATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
1 AAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
*
78060 AGGCTTTTTGGAAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACAACAA
66 AGGCTTTTTGGAAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAA
* *
78125 AAAACTCCCGAAGGCTTTTTGGAAACATCATGCACTGCAGGACTTACAGATGACCCGAAGGC-TT
131 AAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTT
* *
78189 GAAAACATCAAAAAGCTCCCTAAGGCTTATTGG
196 GAAAACATCAAAAAGCTCCCGAAGGCTTTTTGG
* *
78222 AAACATCATGCACTGCAGGACTTACAGATGACCCTAACGCTTTGAAAATATCAAAAAGCTCCCGA
1 AAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
78287 AGGCTTTTTGGAAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAA
66 AGGCTTTTTGGAAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAA
* * *
78352 AAAGCTCTCGAAGGCTTTTTGGAAACATCATGCACTGTAGGACTGACAGATGACCCTAA-GCTTT
131 AAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTT
78416 GAAAACATCAAAAAGCTCCCGAAGGCTTTTTGG
196 GAAAACATCAAAAAGCTCCCGAAGGCTTTTTGG
* * *
78449 AAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTAAAAACATAAAAAAGCTCCCGA
1 AAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
78514 AGGCTTTTTGGAAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAA
66 AGGCTTTTTGGAAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAA
*
78579 AAAACTCCCGAAGGCTTTTTGGAAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGC-TT
131 AAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTT
*
78643 GAAAACATCAAAAAACTCCCGAAGGCTTTTTGG
196 GAAAACATCAAAAAGCTCCCGAAGGCTTTTTGG
* * *
78676 AAACATCATGCACTGTAGGACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAATCTCCCGA
1 AAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
*
78741 AGGCTTTTTGGAAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGTTTTGAAAACATCAA
66 AGGCTTTTTGGAAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAA
* * *
78806 AAAGCTCTCGAAGGCTTTTTGGAAACATCATGCACTGTAGGACTTACAAATGACCCTAAGGCTTT
131 AAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTT
78871 GAAAACATCAAAAAGCTCCCGAAGGCTTTTTGG
196 GAAAACATCAAAAAGCTCCCGAAGGCTTTTTGG
*
78904 AAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAACTCCCGA
1 AAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
*
78969 AGGCTTTTTGGAAACATCATGCACTGCAGGACTTACAGATGACCCGAAGGC-TTGAAAACATCAA
66 AGGCTTTTTGGAAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAA
* *
79033 AAAGCTCCCGAAGGCTTATTGGAAACATCATGCACTGCAGGACTTACAGATGACCCTAACGCTTT
131 AAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTT
79098 GAAAACATCAAAAAGCTCCCGAAGGCTTTTTGG
196 GAAAACATCAAAAAGCTCCCGAAGGCTTTTTGG
*
79131 AAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCTCGA
1 AAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
*
79196 AGGCTTTTTGGAAACATCATGCACTGTAGGACTTACAGATGACCCTAA-GCTTTGAAAACATCAA
66 AGGCTTTTTGGAAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAA
*
79260 AAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTT
131 AAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTT
*
79325 GAAAACATAAAAAAGCTCCCGAAGGCTTTTTGG
196 GAAAACATCAAAAAGCTCCCGAAGGCTTTTTGG
*
79358 AAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAACTCCCGA
1 AAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
*
79423 AGGCTTTTTGGAAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAA
66 AGGCTTTTTGGAAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAA
79488 AAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTT
131 AAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTT
*
79553 GAAAACATCAAAAAACTCCCGAAGGCTTTTTGG
196 GAAAACATCAAAAAGCTCCCGAAGGCTTTTTGG
*
79586 AAACATCATGCACTGCAGGACTTACAGATGACCCGAAGGC-TTGAAAACATCAAAAAGCTCCCGA
1 AAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
* *
79650 AGGCTTATTGGAAACATCATGCACTGCAGGACTTACAGATGACCCTAACGCTTTGAAAACATCAA
66 AGGCTTTTTGGAAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAA
*
79715 AAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTT
131 AAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTT
*
79780 GAAAACATCAAAAAGCTCTCGAAGGCTTTTTGG
196 GAAAACATCAAAAAGCTCCCGAAGGCTTTTTGG
* *
79813 AAACATCATGCACTGTAGGACTTACAGATGACCCTAA-GCTTTGAAAACATCAAAAAACTCCCGA
1 AAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
* *
79877 AGGCTTTTTGGAAACATCATGCATTGCAGGACTTACAGATGACCGTAAGGC-TTGAAAACATCAA
66 AGGCTTTTTGGAAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAA
* * *
79941 AAAGCTCCCGAAGGCTTATTGTAAACATCATGCACTGCAGGACTTACAGATGAACCTAAGGCTTT
131 AAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTT
*
80006 TAAAACATCAAAAAGCTCCCGAAGGCTTTTTGG
196 GAAAACATCAAAAAGCTCCCGAAGGCTTTTTGG
* *
80039 AAACACCATGCACTACAGGACTTACAGATG
1 AAACATCATGCACTGCAGGACTTACAGATG
80069 TAGGAAATAG
Statistics
Matches: 2847, Mismatches: 126, Indels: 19
0.95 0.04 0.01
Matches are distributed among these distances:
226 140 0.05
227 2406 0.85
228 301 0.11
ACGTcount: A:0.35, C:0.23, G:0.19, T:0.23
Consensus pattern (228 bp):
AAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
AGGCTTTTTGGAAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAA
AAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTT
GAAAACATCAAAAAGCTCCCGAAGGCTTTTTGG
Found at i:80768 original size:22 final size:22
Alignment explanation
Indices: 80740--80794 Score: 101
Period size: 22 Copynumber: 2.5 Consensus size: 22
80730 CATAAAGCTT
80740 TCATCTTTGAAAAGAGAATCTA
1 TCATCTTTGAAAAGAGAATCTA
*
80762 TCATCTTTAAAAAGAGAATCTA
1 TCATCTTTGAAAAGAGAATCTA
80784 TCATCTTTGAA
1 TCATCTTTGAA
80795 GAGTGTAGAT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.40, C:0.15, G:0.11, T:0.35
Consensus pattern (22 bp):
TCATCTTTGAAAAGAGAATCTA
Found at i:81241 original size:50 final size:49
Alignment explanation
Indices: 81166--81307 Score: 124
Period size: 40 Copynumber: 3.0 Consensus size: 49
81156 TAGCAGGTTC
* ***
81166 GTAAAACATTTGACAGTGCATTCATCTCTTCCTGTGGTTTCTGTCGAGAT
1 GTAAAACACTTGACAACACATTCATC-CTTCCTGTGGTTTCTGTCGAGAT
*
81216 GTAAAACACTTGACAACACATTCA----TCC--T--TTTCTGT-GGGAT
1 GTAAAACACTTGACAACACATTCATCCTTCCTGTGGTTTCTGTCGAGAT
* *
81256 GTAAAACACTTGACAACACATTCATCCTTTTCTGTGGCTTCTGCTC-AGAT
1 GTAAAACACTTGACAACACATTCATCC-TTCCTGTGGTTTCTG-TCGAGAT
81306 GT
1 GT
81308 TCGTAAAGCA
Statistics
Matches: 73, Mismatches: 8, Indels: 22
0.71 0.08 0.21
Matches are distributed among these distances:
40 28 0.38
41 7 0.10
43 1 0.01
45 5 0.07
47 1 0.01
49 5 0.07
50 26 0.36
ACGTcount: A:0.25, C:0.23, G:0.17, T:0.35
Consensus pattern (49 bp):
GTAAAACACTTGACAACACATTCATCCTTCCTGTGGTTTCTGTCGAGAT
Found at i:81259 original size:40 final size:40
Alignment explanation
Indices: 81203--81292 Score: 162
Period size: 40 Copynumber: 2.2 Consensus size: 40
81193 CTTCCTGTGG
*
81203 TTTCTGTCGAGATGTAAAACACTTGACAACACATTCATCCT
1 TTTCTGT-GGGATGTAAAACACTTGACAACACATTCATCCT
81244 TTTCTGTGGGATGTAAAACACTTGACAACACATTCATCCT
1 TTTCTGTGGGATGTAAAACACTTGACAACACATTCATCCT
81284 TTTCTGTGG
1 TTTCTGTGG
81293 CTTCTGCTCA
Statistics
Matches: 48, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
40 41 0.85
41 7 0.15
ACGTcount: A:0.28, C:0.22, G:0.16, T:0.34
Consensus pattern (40 bp):
TTTCTGTGGGATGTAAAACACTTGACAACACATTCATCCT
Found at i:83627 original size:114 final size:114
Alignment explanation
Indices: 83427--83764 Score: 586
Period size: 114 Copynumber: 3.0 Consensus size: 114
83417 AATCATGCAG
* * *
83427 TTCATCTTTCAATTCCAATGATTGGTTCTGGGGTTCCTACCGAACCAGATCAGATAACTCAAAGA
1 TTCATCTTTCAAATCTAATGATTGGTTCTGGGGTTCCTACCAAACCAGATCAGATAACTCAAAGA
*
83492 ACATTTCCAGAAGATGCTATTGGGTCTCCTTATTTCTACTATGAGCAAA
66 ACACTTCCAGAAGATGCTATTGGGTCTCCTTATTTCTACTATGAGCAAA
*
83541 TTCATCTTTCAAATGTAATGATTGGTTCTGGGGTTCCTACCAAACCAGATCAGATAACTCAAAGA
1 TTCATCTTTCAAATCTAATGATTGGTTCTGGGGTTCCTACCAAACCAGATCAGATAACTCAAAGA
* *
83606 ACACTTCTAGAAGATGCTATTGGGTCTCCTTATTTCTACTATAAGCAAA
66 ACACTTCCAGAAGATGCTATTGGGTCTCCTTATTTCTACTATGAGCAAA
*
83655 TTCATCTTTCAAATCTAATGATTGGTTATGGGGTTCCTACCAAACCAGATCAGATAACTCAAAGA
1 TTCATCTTTCAAATCTAATGATTGGTTCTGGGGTTCCTACCAAACCAGATCAGATAACTCAAAGA
* *
83720 ACACTTCCAGAAGATGTTATTGGGTCTTCTTATTTCTACTATGAG
66 ACACTTCCAGAAGATGCTATTGGGTCTCCTTATTTCTACTATGAG
83765 AACATGGCAC
Statistics
Matches: 211, Mismatches: 13, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
114 211 1.00
ACGTcount: A:0.30, C:0.20, G:0.16, T:0.33
Consensus pattern (114 bp):
TTCATCTTTCAAATCTAATGATTGGTTCTGGGGTTCCTACCAAACCAGATCAGATAACTCAAAGA
ACACTTCCAGAAGATGCTATTGGGTCTCCTTATTTCTACTATGAGCAAA
Found at i:85994 original size:19 final size:20
Alignment explanation
Indices: 85970--86011 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 20
85960 TCTTTTTTTC
85970 TTTTTC-TTTCTTTGCTGGA
1 TTTTTCTTTTCTTTGCTGGA
85989 TTTTTCTTTTTTCTTTGCTGGA
1 TTTTTC--TTTTCTTTGCTGGA
86011 T
1 T
86012 GAGTATAAGA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 6 0.30
22 14 0.70
ACGTcount: A:0.05, C:0.14, G:0.14, T:0.67
Consensus pattern (20 bp):
TTTTTCTTTTCTTTGCTGGA
Found at i:93351 original size:3 final size:3
Alignment explanation
Indices: 93343--93392 Score: 73
Period size: 3 Copynumber: 16.0 Consensus size: 3
93333 TTGTAATATT
*
93343 TAA TAA TAA TAA TAAA TAA TAA TAA TAA TAA TAA TGA TAAA TAA TAA
1 TAA TAA TAA TAA T-AA TAA TAA TAA TAA TAA TAA TAA T-AA TAA TAA
93390 TAA
1 TAA
93393 AAACAAACTG
Statistics
Matches: 43, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
3 38 0.88
4 5 0.12
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (3 bp):
TAA
Found at i:93367 original size:19 final size:18
Alignment explanation
Indices: 93343--93392 Score: 73
Period size: 19 Copynumber: 2.7 Consensus size: 18
93333 TTGTAATATT
93343 TAATAATAATAATAAATAA
1 TAATAATAATAAT-AATAA
*
93362 TAATAATAATAATAATGA
1 TAATAATAATAATAATAA
93380 TAAATAATAATAA
1 T-AATAATAATAA
93393 AAACAAACTG
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
18 5 0.17
19 24 0.83
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (18 bp):
TAATAATAATAATAATAA
Found at i:95189 original size:20 final size:20
Alignment explanation
Indices: 95164--95204 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
95154 ACCACTCTAT
95164 GAGCCTAACCTCGTAACCAA
1 GAGCCTAACCTCGTAACCAA
95184 GAGCCTAACCTCGTAACCAA
1 GAGCCTAACCTCGTAACCAA
95204 G
1 G
95205 GTTGAACTGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.34, C:0.34, G:0.17, T:0.15
Consensus pattern (20 bp):
GAGCCTAACCTCGTAACCAA
Found at i:96602 original size:21 final size:21
Alignment explanation
Indices: 96560--96602 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
96550 TTTCTGGGCT
* *
96560 AGGGGAATCGGTGCCCATTCA
1 AGGGGAATCGATGCCCACTCA
* *
96581 AGGGGAATCGATTCCCCCTCA
1 AGGGGAATCGATGCCCACTCA
96602 A
1 A
96603 ACGAATATGA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.26, C:0.28, G:0.28, T:0.19
Consensus pattern (21 bp):
AGGGGAATCGATGCCCACTCA
Found at i:96655 original size:20 final size:20
Alignment explanation
Indices: 96630--96667 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
96620 GAATGCTAGA
*
96630 GGGGAATCGATACCCCCAGG
1 GGGGAACCGATACCCCCAGG
*
96650 GGGGAACCGATTCCCCCA
1 GGGGAACCGATACCCCCA
96668 TAATGGAAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.24, C:0.34, G:0.32, T:0.11
Consensus pattern (20 bp):
GGGGAACCGATACCCCCAGG
Found at i:97300 original size:31 final size:30
Alignment explanation
Indices: 97262--97340 Score: 86
Period size: 31 Copynumber: 2.6 Consensus size: 30
97252 GTCTTTCGAG
*
97262 ACATATGGACAGTATACCTATGTTCTAAGGA
1 ACATATGGACAGT-TACCTAGGTTCTAAGGA
* ** *
97293 ACATATGGATAGTTTACCTAGGTTCTTCGGG
1 ACATATGGACAG-TTACCTAGGTTCTAAGGA
*
97324 ACCTATGGACAGTTACC
1 ACATATGGACAGTTACC
97341 GATGATCTTT
Statistics
Matches: 40, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
30 5 0.12
31 34 0.85
32 1 0.03
ACGTcount: A:0.29, C:0.19, G:0.22, T:0.30
Consensus pattern (30 bp):
ACATATGGACAGTTACCTAGGTTCTAAGGA
Found at i:97357 original size:30 final size:30
Alignment explanation
Indices: 97323--97687 Score: 651
Period size: 30 Copynumber: 12.2 Consensus size: 30
97313 GGTTCTTCGG
* *
97323 GACCTATGGACAGTTACCGATGATCTTTAT
1 GACCTCTGGACAGTTACCGAGGATCTTTAT
97353 GACCTCTGGACAGTTACCGAGGATCTTTAT
1 GACCTCTGGACAGTTACCGAGGATCTTTAT
97383 GACCTCTGGACAGTTACCGAGGATCTTTAT
1 GACCTCTGGACAGTTACCGAGGATCTTTAT
97413 GACCTCTGGACAGTTACCGAGGATCTTTAT
1 GACCTCTGGACAGTTACCGAGGATCTTTAT
97443 GACCTCTGGACAGTTACCGAGGATCTTTAT
1 GACCTCTGGACAGTTACCGAGGATCTTTAT
97473 GACCTCTGGACAGTTACCGAGGATCTTTAT
1 GACCTCTGGACAGTTACCGAGGATCTTTAT
97503 GACCTCTGGACAGTTACCGAGGATCTTTAT
1 GACCTCTGGACAGTTACCGAGGATCTTTAT
*
97533 GACCTCTGGAAAGTTACCGAGGATCTTTAT
1 GACCTCTGGACAGTTACCGAGGATCTTTAT
97563 GACCTCTGGACAGTTACCGAGGATCTTTAT
1 GACCTCTGGACAGTTACCGAGGATCTTTAT
*
97593 GACCTCTGGACAGTTACCAAGGATCTTTAT
1 GACCTCTGGACAGTTACCGAGGATCTTTAT
*
97623 GACCTCTGGACAGTTACTGAGGATCTTTAT
1 GACCTCTGGACAGTTACCGAGGATCTTTAT
* * *
97653 GACCTCTGGATAGTTACCG-GGGTCTTTGT
1 GACCTCTGGACAGTTACCGAGGATCTTTAT
97682 GACCTC
1 GACCTC
97688 CGGATAGGTC
Statistics
Matches: 324, Mismatches: 11, Indels: 1
0.96 0.03 0.00
Matches are distributed among these distances:
29 14 0.04
30 310 0.96
ACGTcount: A:0.23, C:0.23, G:0.23, T:0.31
Consensus pattern (30 bp):
GACCTCTGGACAGTTACCGAGGATCTTTAT
Found at i:102190 original size:2 final size:2
Alignment explanation
Indices: 102185--102237 Score: 92
Period size: 2 Copynumber: 27.5 Consensus size: 2
102175 ATCTTATTTC
102185 AT AT AT AT AT AT AT AT AT AT AT -T A- AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
102225 AT AT AT AT AT AT A
1 AT AT AT AT AT AT A
102238 CGTTCACTTA
Statistics
Matches: 49, Mismatches: 0, Indels: 4
0.92 0.00 0.08
Matches are distributed among these distances:
1 2 0.04
2 47 0.96
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:102882 original size:21 final size:23
Alignment explanation
Indices: 102855--102909 Score: 80
Period size: 21 Copynumber: 2.5 Consensus size: 23
102845 CGATGTTCCC
102855 TGGTATCGATACCCTC-TACATA
1 TGGTATCGATACCCTCTTACATA
*
102877 -GGTATCGATA-CCTCTTCCATA
1 TGGTATCGATACCCTCTTACATA
102898 TGGTATCGATAC
1 TGGTATCGATAC
102910 TGTTCATACA
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
20 4 0.14
21 15 0.52
22 10 0.34
ACGTcount: A:0.25, C:0.25, G:0.16, T:0.33
Consensus pattern (23 bp):
TGGTATCGATACCCTCTTACATA
Found at i:106018 original size:15 final size:15
Alignment explanation
Indices: 105998--106028 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
105988 GTAATATGTT
105998 TATTTTATCTCTTTG
1 TATTTTATCTCTTTG
106013 TATTTTATCTCTTTG
1 TATTTTATCTCTTTG
106028 T
1 T
106029 TAACCCATGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.13, C:0.13, G:0.06, T:0.68
Consensus pattern (15 bp):
TATTTTATCTCTTTG
Found at i:108918 original size:35 final size:35
Alignment explanation
Indices: 108872--108940 Score: 138
Period size: 35 Copynumber: 2.0 Consensus size: 35
108862 TTTATTTCAG
108872 AACGATAAAGATCCTCTAATTCTATAGTTTCCAAA
1 AACGATAAAGATCCTCTAATTCTATAGTTTCCAAA
108907 AACGATAAAGATCCTCTAATTCTATAGTTTCCAA
1 AACGATAAAGATCCTCTAATTCTATAGTTTCCAA
108941 TCTTACTTCA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.32
Consensus pattern (35 bp):
AACGATAAAGATCCTCTAATTCTATAGTTTCCAAA
Done.