genome.fa.s1934.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001934.1 Hibiscus syriacus cultivar Beakdansim tig00003918_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  89548

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1041--1160	43	2.8	43	83	2	152	22	20	22	34	1.97
3918--3965	24	2.0	24	83	0	60	50	4	8	37	1.52
5299--5345	20	2.3	20	78	7	51	46	17	0	36	1.48
11946--12000	15	3.6	14	79	11	56	18	1	3	76	1.02
11946--12000	7	7.3	7	76	15	56	18	1	3	76	1.02
19249--19299	23	2.2	23	100	0	102	64	3	19	11	1.41
22973--23018	20	2.3	20	100	0	92	58	0	4	36	1.18
32282--32371	30	3.0	30	88	3	137	40	15	7	36	1.76
34657--34746	30	3.0	30	88	3	137	40	15	7	36	1.76
38246--38296	21	2.5	21	75	12	54	62	15	1	19	1.41
40250--40282	16	2.1	16	94	0	57	33	3	3	60	1.27
44359--44475	33	3.5	33	84	5	155	21	12	23	42	1.87
47089--47241	64	2.4	64	82	7	177	30	17	22	28	1.97
65682--65823	60	2.4	60	85	4	196	38	16	10	33	1.83
68736--68908	70	2.5	67	81	9	188	43	11	11	32	1.77
68722--69068	71	4.9	70	79	6	319	45	10	12	31	1.77
68722--69070	72	5.0	70	79	6	296	44	10	12	31	1.77
68931--69101	72	2.4	72	81	4	177	46	9	11	32	1.73
69410--69571	76	2.1	77	89	4	249	35	12	8	43	1.73
71679--71727	3	15.7	3	81	8	53	36	2	0	61	1.08
81019--81066	23	2.1	23	88	0	69	35	12	18	33	1.89
81106--81771	331	2.0	333	97	0	1255	38	10	8	42	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
81828--81886	23	2.6	23	88	0	82	40	16	5	37	1.71
82286--82372	39	2.2	39	93	0	147	18	13	19	48	1.81
82630--82666	18	2.1	18	89	0	56	51	10	5	32	1.60
83051--83100	25	2.0	25	88	3	75	40	18	8	34	1.79
83362--83413	23	2.3	22	90	6	77	44	19	1	34	1.62
83372--83434	23	2.7	23	90	0	90	38	19	6	36	1.77
83774--83839	25	2.6	25	80	0	87	42	13	9	34	1.76
86189--86698	177	2.9	181	92	3	826	32	16	13	36	1.89
88132--88171	3	13.7	3	84	5	55	25	35	2	37	1.69
88132--88222	18	5.1	18	79	1	85	19	35	8	36	1.83
88165--88219	12	4.6	12	88	0	74	16	36	12	34	1.87
88132--88211	6	13.5	6	82	1	63	21	35	8	35	1.84

Tables:   1

The End!