genome.fa.s1935.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001935.1 Hibiscus syriacus cultivar Beakdansim tig00003920_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  109471

Tables:   1   

This is table  1  of  1  ( 59 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3690--3836	64	2.2	65	82	7	172	48	3	4	42	1.40
14294--14349	28	2.0	29	82	10	71	46	1	0	51	1.11
14413--14548	68	2.1	64	83	8	166	44	0	4	50	1.27
26195--26235	19	2.2	19	86	0	55	51	12	9	26	1.70
30904--30944	21	2.0	21	85	0	55	31	14	19	34	1.92
36248--36432	66	2.8	66	99	0	361	25	25	4	43	1.74
37049--37086	18	2.1	18	90	0	58	34	7	5	52	1.53
39039--39086	19	2.5	20	82	3	62	52	6	12	29	1.63
39177--39203	14	1.9	14	100	0	54	44	7	0	48	1.31
40174--40213	21	1.9	21	89	0	62	30	10	10	50	1.69
40467--40519	20	2.7	20	90	0	79	16	26	24	32	1.97
46929--47012	23	3.7	23	85	1	107	23	32	25	19	1.97
47660--47709	21	2.4	21	96	0	91	18	28	16	38	1.91
48925--48992	28	2.4	28	97	0	127	22	1	29	47	1.60
50912--50969	23	2.5	23	97	0	107	13	24	18	43	1.87
51551--51589	18	2.2	18	85	0	51	41	2	5	51	1.38
51940--51973	8	4.2	8	88	0	50	29	14	32	23	1.94
51960--52062	52	2.0	50	85	5	136	20	16	27	35	1.94
54143--54170	14	2.0	14	100	0	56	35	7	7	50	1.57
54381--54427	23	2.0	23	84	8	60	65	8	4	21	1.37
58235--58263	2	14.5	2	100	0	58	48	0	0	51	1.00
58584--58638	13	4.2	13	83	0	56	29	18	18	34	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61103--61151	19	2.7	17	84	9	53	26	20	28	24	1.99
61099--61282	65	2.8	64	79	8	205	27	19	23	29	1.98
61251--61356	45	2.4	45	98	0	203	29	16	20	33	1.94
65584--65628	16	2.6	18	76	20	51	15	11	31	42	1.82
67777--67864	44	2.0	44	97	0	167	26	9	32	31	1.87
70066--70134	20	3.4	20	72	7	68	33	15	20	30	1.94
70056--70134	41	1.9	41	82	5	97	37	15	18	27	1.91
70056--70108	20	2.6	21	75	6	63	41	13	16	28	1.86
75643--75710	20	3.3	20	75	2	73	44	25	13	17	1.85
75614--75724	40	2.8	39	75	13	109	42	21	13	22	1.88
75700--75742	19	2.3	19	87	0	59	37	18	9	34	1.83
76499--76532	12	2.8	12	90	0	50	55	26	0	17	1.42
78975--79010	18	2.0	18	94	0	63	55	25	2	16	1.55
79296--79335	20	2.0	20	90	0	62	42	22	17	17	1.89
79297--79345	20	2.5	20	83	6	55	48	20	14	16	1.80
79313--79425	53	2.1	53	98	0	217	37	23	16	23	1.94
80982--81049	21	3.2	21	76	0	64	17	22	35	25	1.95
83203--83265	20	3.2	20	93	2	101	47	23	17	11	1.79
83756--84003	20	12.4	20	81	9	256	20	15	22	41	1.89
83756--84060	60	5.1	60	80	9	270	20	15	23	40	1.90
83756--84060	40	7.7	40	77	10	254	20	15	23	40	1.90
84008--84054	20	2.3	20	92	0	76	21	17	25	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
89678--89702	12	2.1	12	100	0	50	48	8	16	28	1.74
97445--97485	2	21.0	2	85	5	57	46	0	4	48	1.23
98047--98081	18	1.9	18	88	0	52	42	2	0	54	1.15
98037--98143	31	4.0	26	69	20	71	46	1	0	50	1.18
98186--98265	20	3.8	21	75	18	69	53	1	1	43	1.16
98190--98244	29	1.9	28	81	3	65	52	0	1	45	1.11
98317--98383	29	2.3	30	80	19	79	53	1	0	44	1.09
98611--98667	14	4.0	14	77	4	60	35	17	1	45	1.59
98611--98665	29	1.9	28	88	3	83	34	16	1	47	1.57
98987--99028	2	21.0	2	100	0	84	50	0	0	50	1.00
104425--104957	97	5.4	102	75	12	461	20	20	25	33	1.97
104379--104795	97	4.2	99	77	11	374	21	18	26	33	1.97
104471--104846	192	2.0	192	90	4	607	21	19	25	33	1.97
104965--105074	41	2.7	40	83	8	123	23	17	30	29	1.97
105780--105829	15	3.3	15	82	17	59	0	18	6	76	0.99

Tables:   1

The End!