Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01001936.1 Hibiscus syriacus cultivar Beakdansim tig00003921_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 72575
ACGTcount: A:0.31, C:0.18, G:0.17, T:0.33
Found at i:908 original size:21 final size:22
Alignment explanation
Indices: 882--944 Score: 103
Period size: 21 Copynumber: 3.0 Consensus size: 22
872 TGCCATCTCG
882 CAGGGTTACATTCCTAGCCC-T
1 CAGGGTTACATTCCTAGCCCGT
903 CAGGGTTACATTCCTAGCCCGT
1 CAGGGTTACATTCCTAGCCCGT
*
925 CA-GGTTACATGCCTAGCCCG
1 CAGGGTTACATTCCTAGCCCG
945 CAGATTTGAA
Statistics
Matches: 40, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
21 37 0.93
22 3 0.08
ACGTcount: A:0.19, C:0.33, G:0.22, T:0.25
Consensus pattern (22 bp):
CAGGGTTACATTCCTAGCCCGT
Found at i:1545 original size:12 final size:12
Alignment explanation
Indices: 1525--1568 Score: 61
Period size: 12 Copynumber: 3.5 Consensus size: 12
1515 GATTTTATCC
*
1525 TTAACATATACA
1 TTAAAATATACA
1537 TTAAAATATACA
1 TTAAAATATACA
1549 TTAAAACATATACA
1 TT-AAA-ATATACA
1563 TTAAAA
1 TTAAAA
1569 CCAACTTATC
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
12 14 0.48
13 6 0.21
14 9 0.31
ACGTcount: A:0.57, C:0.11, G:0.00, T:0.32
Consensus pattern (12 bp):
TTAAAATATACA
Found at i:1561 original size:14 final size:14
Alignment explanation
Indices: 1527--1569 Score: 72
Period size: 14 Copynumber: 3.2 Consensus size: 14
1517 TTTTATCCTT
1527 AACATATACATT-A
1 AACATATACATTAA
1540 AA-ATATACATTAA
1 AACATATACATTAA
1553 AACATATACATTAA
1 AACATATACATTAA
1567 AAC
1 AAC
1570 CAACTTATCA
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
12 9 0.32
13 5 0.18
14 14 0.50
ACGTcount: A:0.58, C:0.14, G:0.00, T:0.28
Consensus pattern (14 bp):
AACATATACATTAA
Found at i:1762 original size:23 final size:22
Alignment explanation
Indices: 1722--1772 Score: 84
Period size: 23 Copynumber: 2.3 Consensus size: 22
1712 CACATTTATC
1722 ATTTATCCATACATTTTATCCA
1 ATTTATCCATACATTTTATCCA
*
1744 ATTTATTCATAACATTTTATCCA
1 ATTTATCCAT-ACATTTTATCCA
1767 ATTTAT
1 ATTTAT
1773 ACAAACTTCA
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
22 9 0.33
23 18 0.67
ACGTcount: A:0.33, C:0.18, G:0.00, T:0.49
Consensus pattern (22 bp):
ATTTATCCATACATTTTATCCA
Found at i:2374 original size:116 final size:115
Alignment explanation
Indices: 1826--2464 Score: 962
Period size: 116 Copynumber: 5.6 Consensus size: 115
1816 TTTCACAAGA
* *
1826 TGACATAATAGGGCAATGATAACATATTCTCTGACAAAATAATGGAAGGTGCCCCCCCGGAACGC
1 TGACATAATAGGGCAATGATAACATATTCTCTGACAAAATAATGGAAGGCGCCCCCCGGGAACGC
* * *
1891 GCTTTCACCACTTT-GGTACTGACA-GAGT-G-CCCCCGAGGGACATGAG
66 GCCTTCACCACTTTGGGTACTGACATGAATAGTACCCCGAGGGACATGAG
1937 TGACATAATAGGGCAATGATAACATATTCTCTGACAAAATAATGGAAGGCGCCCCCC--GAACGC
1 TGACATAATAGGGCAATGATAACATATTCTCTGACAAAATAATGGAAGGCGCCCCCCGGGAACGC
* *
2000 GCTTTCACCACTTTGGGTACTGACATGAATAGT-GCCCGAGGGACATGAG
66 GCCTTCACCACTTTGGGTACTGACATGAATAGTACCCCGAGGGACATGAG
* *
2049 TGACATAATAGGGCAATGCTAACATATTCTCTGAC-AAATAATGGAAGGCGTCCCCCGGGAACGC
1 TGACATAATAGGGCAATGATAACATATTCTCTGACAAAATAATGGAAGGCGCCCCCCGGGAACGC
*
2113 GCTTTCACCAC-TTGGGTACTGACATGAATAGTACCCCGAGGGACATGAG
66 GCCTTCACCACTTTGGGTACTGACATGAATAGTACCCCGAGGGACATGAG
*
2162 TGATATAATAGGGCAATGATAAC--ATTCTCTGACAAAATAATGGAAGGCGCCCCCCCGGGAACG
1 TGACATAATAGGGCAATGATAACATATTCTCTGACAAAATAATGGAAGGCG-CCCCCCGGGAACG
2225 CGCCTTCACCACTTTGGGTACTGACATGAATAGTACCCCTGAGGGACATGAG
65 CGCCTTCACCACTTTGGGTACTGACATGAATAGTACCCC-GAGGGACATGAG
* * * * *
2277 TGATATAATAGGGTAATGATAACATATTCTCTGAAAAAATAATGGAAGGTGCCCCCCGGGAATGC
1 TGACATAATAGGGCAATGATAACATATTCTCTGACAAAATAATGGAAGGCGCCCCCCGGGAACGC
* * *
2342 GCCTTCACCACTTTGGGTTA-TGGCATGAATAGTGCCCTTGAGGGACATGAG
66 GCCTTCACCACTTTGGG-TACTGACATGAATAGTACCC-CGAGGGACATGAG
* *
2393 TGACATAATAGGGCAATGATAACATATTCTCTGATAAAATAATGGAAGGCG-CCCCCGGGAATGC
1 TGACATAATAGGGCAATGATAACATATTCTCTGACAAAATAATGGAAGGCGCCCCCCGGGAACGC
2457 GCCTTCAC
66 GCCTTCAC
2465 GTGAATAGTA
Statistics
Matches: 492, Mismatches: 21, Indels: 26
0.91 0.04 0.05
Matches are distributed among these distances:
109 20 0.04
110 10 0.02
111 89 0.18
112 86 0.17
113 76 0.15
114 26 0.05
115 55 0.11
116 104 0.21
117 26 0.05
ACGTcount: A:0.31, C:0.23, G:0.24, T:0.22
Consensus pattern (115 bp):
TGACATAATAGGGCAATGATAACATATTCTCTGACAAAATAATGGAAGGCGCCCCCCGGGAACGC
GCCTTCACCACTTTGGGTACTGACATGAATAGTACCCCGAGGGACATGAG
Found at i:4354 original size:72 final size:72
Alignment explanation
Indices: 4237--4380 Score: 279
Period size: 72 Copynumber: 2.0 Consensus size: 72
4227 TACTTTTTTC
4237 CAATTTTTCTATCACTTTCGTATTACTTATTTATACTTCATATTAACTATTACATATTCCTAATG
1 CAATTTTTCTATCACTTTCGTATTACTTATTTATACTTCATATTAACTATTACATATTCCTAATG
4302 GCTTAGG
66 GCTTAGG
*
4309 CAATTTTTCTATCATTTTCGTATTACTTATTTATACTTCATATTAACTATTACATATTCCTAATG
1 CAATTTTTCTATCACTTTCGTATTACTTATTTATACTTCATATTAACTATTACATATTCCTAATG
4374 GCTTAGG
66 GCTTAGG
4381 TTACGAACTC
Statistics
Matches: 71, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
72 71 1.00
ACGTcount: A:0.28, C:0.17, G:0.07, T:0.48
Consensus pattern (72 bp):
CAATTTTTCTATCACTTTCGTATTACTTATTTATACTTCATATTAACTATTACATATTCCTAATG
GCTTAGG
Found at i:5423 original size:22 final size:22
Alignment explanation
Indices: 5398--5453 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
5388 ATAAAATGAT
5398 TAATT-ATATTTATTTAATATAA
1 TAATTAATA-TTATTTAATATAA
*
5420 TAATTAATATTATTTATTATAA
1 TAATTAATATTATTTAATATAA
*
5442 -AA-AAATATTATT
1 TAATTAATATTATT
5454 AATTTTAAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
20 9 0.29
21 2 0.06
22 17 0.55
23 3 0.10
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (22 bp):
TAATTAATATTATTTAATATAA
Found at i:5425 original size:26 final size:26
Alignment explanation
Indices: 5362--5457 Score: 77
Period size: 26 Copynumber: 3.5 Consensus size: 26
5352 GATTAATATT
* *
5362 AAATAAATTATTTATATTGTAATTTTATA
1 AAAT-AATTAATTATATT-T-ATTTAATA
*
5391 AAATGATTAATTATATTTATTTAATA
1 AAATAATTAATTATATTTATTTAATA
* *
5417 TAATAATTAA-TATTATTTATTATAAAA
1 AAATAATTAATTA-TATTTATT-TAATA
5444 AAATATTATTAATT
1 AAATA--ATTAATT
5458 TTAAAATATT
Statistics
Matches: 55, Mismatches: 7, Indels: 9
0.77 0.10 0.13
Matches are distributed among these distances:
25 2 0.04
26 23 0.42
27 9 0.16
28 11 0.20
29 9 0.16
30 1 0.02
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (26 bp):
AAATAATTAATTATATTTATTTAATA
Found at i:5450 original size:20 final size:20
Alignment explanation
Indices: 5425--5463 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
5415 TATAATAATT
*
5425 AATATTATTTATTATAAAAA
1 AATATTATTAATTATAAAAA
*
5445 AATATTATTAATTTTAAAA
1 AATATTATTAATTATAAAA
5464 TATTAAAATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (20 bp):
AATATTATTAATTATAAAAA
Found at i:24155 original size:5 final size:5
Alignment explanation
Indices: 24145--24174 Score: 60
Period size: 5 Copynumber: 6.0 Consensus size: 5
24135 TCGTATCACT
24145 TTCTC TTCTC TTCTC TTCTC TTCTC TTCTC
1 TTCTC TTCTC TTCTC TTCTC TTCTC TTCTC
24175 ATTTTTCTTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.00, C:0.40, G:0.00, T:0.60
Consensus pattern (5 bp):
TTCTC
Found at i:30490 original size:20 final size:21
Alignment explanation
Indices: 30438--30498 Score: 70
Period size: 20 Copynumber: 2.9 Consensus size: 21
30428 TTCCCCTGTG
30438 GGGGGAATCGGTTCCCCTTCAAA
1 GGGGGAATCGGTT-CCC-TCAAA
*
30461 GGGGGAATCGGTTCCCTC-AT
1 GGGGGAATCGGTTCCCTCAAA
* *
30481 GGGGGTATCGATTCCCTC
1 GGGGGAATCGGTTCCCTC
30499 TGCACCAAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
20 17 0.49
21 2 0.06
22 3 0.09
23 13 0.37
ACGTcount: A:0.16, C:0.26, G:0.33, T:0.25
Consensus pattern (21 bp):
GGGGGAATCGGTTCCCTCAAA
Found at i:34344 original size:22 final size:21
Alignment explanation
Indices: 34302--34341 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
34292 GAGTTTATTT
*
34302 TCATTTTTCAATTTTGAAACA
1 TCATTTTTCAATTTTAAAACA
34323 TCATTTTT-ATATTTTAAAA
1 TCATTTTTCA-ATTTTAAAA
34342 ACAATTTCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 1 0.06
21 16 0.94
ACGTcount: A:0.35, C:0.10, G:0.03, T:0.53
Consensus pattern (21 bp):
TCATTTTTCAATTTTAAAACA
Found at i:37507 original size:2 final size:2
Alignment explanation
Indices: 37500--37545 Score: 92
Period size: 2 Copynumber: 23.0 Consensus size: 2
37490 TCAATCTACA
37500 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
37542 AT AT
1 AT AT
37546 TTATGACATA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 44 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:37664 original size:85 final size:84
Alignment explanation
Indices: 37563--37787 Score: 369
Period size: 85 Copynumber: 2.7 Consensus size: 84
37553 ATACAATCAC
* * * * * *
37563 GACACACGAATGTGTGTCATCTTCATTTTTGACGTGTGCTTCAATGACACGCAATGTAAGTTGTA
1 GACACACAAATGTGTGTCATCTTCATTTATGACG-GGGCTTCAATGACGCGCAATGCAAGTGGTA
37628 AATGCGTGTCATAAATTTAT
65 AATGCGTGTCATAAATTTAT
37648 GACACACAAATGTGTGTCATCTTCATTTATGACGGGGACTTCAATGACGCGCAATGCAAGTGGTA
1 GACACACAAATGTGTGTCATCTTCATTTATGACGGGG-CTTCAATGACGCGCAATGCAAGTGGTA
37713 AATGCGTGTCATAAATTTAT
65 AATGCGTGTCATAAATTTAT
*
37733 GACACACAAATGTGAGTCATCTTCATTTATGACGGGGCTTCAATGACGCGCAATG
1 GACACACAAATGTGTGTCATCTTCATTTATGACGGGGCTTCAATGACGCGCAATG
37788 AGCGTCATAA
Statistics
Matches: 132, Mismatches: 7, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
84 20 0.15
85 112 0.85
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.31
Consensus pattern (84 bp):
GACACACAAATGTGTGTCATCTTCATTTATGACGGGGCTTCAATGACGCGCAATGCAAGTGGTAA
ATGCGTGTCATAAATTTAT
Found at i:37813 original size:26 final size:26
Alignment explanation
Indices: 37784--37848 Score: 121
Period size: 26 Copynumber: 2.5 Consensus size: 26
37774 AATGACGCGC
37784 AATGAGCGTCATAAATGTGTGTCATA
1 AATGAGCGTCATAAATGTGTGTCATA
37810 AATGAGCGTCATAAATGTGTGTCATA
1 AATGAGCGTCATAAATGTGTGTCATA
*
37836 AATGCGCGTCATA
1 AATGAGCGTCATA
37849 GATTTATGAC
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 38 1.00
ACGTcount: A:0.34, C:0.14, G:0.23, T:0.29
Consensus pattern (26 bp):
AATGAGCGTCATAAATGTGTGTCATA
Found at i:37846 original size:13 final size:13
Alignment explanation
Indices: 37784--37848 Score: 85
Period size: 13 Copynumber: 5.0 Consensus size: 13
37774 AATGACGCGC
37784 AATGAGCGTCATA
1 AATGAGCGTCATA
* *
37797 AATGTGTGTCATA
1 AATGAGCGTCATA
37810 AATGAGCGTCATA
1 AATGAGCGTCATA
* *
37823 AATGTGTGTCATA
1 AATGAGCGTCATA
*
37836 AATGCGCGTCATA
1 AATGAGCGTCATA
37849 GATTTATGAC
Statistics
Matches: 44, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
13 44 1.00
ACGTcount: A:0.34, C:0.14, G:0.23, T:0.29
Consensus pattern (13 bp):
AATGAGCGTCATA
Found at i:40944 original size:36 final size:36
Alignment explanation
Indices: 40903--41041 Score: 208
Period size: 36 Copynumber: 3.9 Consensus size: 36
40893 CGATACATCT
* *
40903 TTCCGTTCGATTAGAATCGGAAGTGCCGATGCTTCC
1 TTCCGTTCGATTTGAATCGGAAGTGCCGATGCCTCC
*
40939 TTCCGTTCGATTTGAATCGGAAGTGCCGATGCCTAC
1 TTCCGTTCGATTTGAATCGGAAGTGCCGATGCCTCC
* * *
40975 TTCCATTCAATTTGAATCGGAAGTGTCGATGCCTCC
1 TTCCGTTCGATTTGAATCGGAAGTGCCGATGCCTCC
*
41011 TTCCGTTCTATTTGAATCGGAAGTG-CGATGC
1 TTCCGTTCGATTTGAATCGGAAGTGCCGATGC
41042 TTTCTTTCGT
Statistics
Matches: 94, Mismatches: 9, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
35 6 0.06
36 88 0.94
ACGTcount: A:0.20, C:0.24, G:0.24, T:0.32
Consensus pattern (36 bp):
TTCCGTTCGATTTGAATCGGAAGTGCCGATGCCTCC
Found at i:44118 original size:29 final size:29
Alignment explanation
Indices: 44072--44154 Score: 130
Period size: 29 Copynumber: 2.8 Consensus size: 29
44062 CTCACCTAAC
*
44072 TAAATTGATGTAAACAATGACATCATTACT
1 TAAA-TGATGTAAGCAATGACATCATTACT
*
44102 TAAATGATGTAAGCAATGACATCTTTACT
1 TAAATGATGTAAGCAATGACATCATTACT
*
44131 TAAATGATGTAAGCAATGAGATCA
1 TAAATGATGTAAGCAATGACATCA
44155 ATTTAGTTTG
Statistics
Matches: 49, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
29 45 0.92
30 4 0.08
ACGTcount: A:0.42, C:0.12, G:0.14, T:0.31
Consensus pattern (29 bp):
TAAATGATGTAAGCAATGACATCATTACT
Found at i:47530 original size:15 final size:15
Alignment explanation
Indices: 47510--47539 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
47500 CTTTCTCATA
47510 GTTGTTGTTAGAATT
1 GTTGTTGTTAGAATT
*
47525 GTTGTTGTTGGAATT
1 GTTGTTGTTAGAATT
47540 CCAGCCTCGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.17, C:0.00, G:0.30, T:0.53
Consensus pattern (15 bp):
GTTGTTGTTAGAATT
Found at i:48853 original size:29 final size:29
Alignment explanation
Indices: 48810--48890 Score: 135
Period size: 29 Copynumber: 2.8 Consensus size: 29
48800 CTCACCTAAC
48810 TAAATTGATGTAAGCAATGACATCATTACT
1 TAAA-TGATGTAAGCAATGACATCATTACT
* *
48840 TAAATGATGTAAGCAATAACATCTTTACT
1 TAAATGATGTAAGCAATGACATCATTACT
48869 TAAATGATGTAAGCAATGACAT
1 TAAATGATGTAAGCAATGACAT
48891 TAATTTAGTT
Statistics
Matches: 48, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
29 44 0.92
30 4 0.08
ACGTcount: A:0.42, C:0.12, G:0.14, T:0.32
Consensus pattern (29 bp):
TAAATGATGTAAGCAATGACATCATTACT
Found at i:52327 original size:15 final size:15
Alignment explanation
Indices: 52299--52328 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
52289 TATTTTTAAA
*
52299 TTATGTTTATTTATT
1 TTATATTTATTTATT
52314 TTATATTTATTTATT
1 TTATATTTATTTATT
52329 AATGATTATA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.23, C:0.00, G:0.03, T:0.73
Consensus pattern (15 bp):
TTATATTTATTTATT
Found at i:52461 original size:34 final size:33
Alignment explanation
Indices: 52423--52491 Score: 93
Period size: 34 Copynumber: 2.1 Consensus size: 33
52413 TAAGATAAAT
* * *
52423 TTATAATTTGGATCTTAAATAATTTTTCTTATGA
1 TTATAATTTGAATATTAAATAATTTTT-TAATGA
*
52457 TTATAATTTGAATATTAAATTATTTTTTAATGA
1 TTATAATTTGAATATTAAATAATTTTTTAATGA
52490 TT
1 TT
52492 TCATATATAT
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
33 7 0.23
34 24 0.77
ACGTcount: A:0.35, C:0.03, G:0.07, T:0.55
Consensus pattern (33 bp):
TTATAATTTGAATATTAAATAATTTTTTAATGA
Found at i:58504 original size:58 final size:58
Alignment explanation
Indices: 58414--58529 Score: 214
Period size: 58 Copynumber: 2.0 Consensus size: 58
58404 TTCCGGATAG
58414 GCCCTCCATGACTATTCTATAAGCATCTATTTATCTCGTATAACCTAGTTGTGTTATC
1 GCCCTCCATGACTATTCTATAAGCATCTATTTATCTCGTATAACCTAGTTGTGTTATC
* *
58472 GCCCTCCATTACTATTCTATAAGCATCTATTTATCTCGTATCACCTAGTTGTGTTATC
1 GCCCTCCATGACTATTCTATAAGCATCTATTTATCTCGTATAACCTAGTTGTGTTATC
58530 ATCCCACTCG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
58 56 1.00
ACGTcount: A:0.23, C:0.25, G:0.11, T:0.41
Consensus pattern (58 bp):
GCCCTCCATGACTATTCTATAAGCATCTATTTATCTCGTATAACCTAGTTGTGTTATC
Found at i:58729 original size:16 final size:16
Alignment explanation
Indices: 58710--58744 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
58700 TCTTTCAAAT
58710 ATTTTTGAAAATAATC
1 ATTTTTGAAAATAATC
58726 ATTTTTGAAAATAATC
1 ATTTTTGAAAATAATC
58742 ATT
1 ATT
58745 AACAGAATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.43, C:0.06, G:0.06, T:0.46
Consensus pattern (16 bp):
ATTTTTGAAAATAATC
Done.