genome.fa.s1937.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001937.1 Hibiscus syriacus cultivar Beakdansim tig00003922_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74701

Tables:   1   

This is table  1  of  1  ( 78 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
158--214	28	2.0	28	96	0	105	61	21	12	5	1.50
1182--1223	19	2.3	18	80	15	50	35	2	38	23	1.68
1558--1599	22	1.9	22	85	0	57	21	7	16	54	1.65
4083--4127	16	2.6	18	76	23	51	26	13	4	55	1.57
8827--8896	23	3.0	23	83	4	70	35	21	24	18	1.95
13962--14256	46	6.4	46	89	0	419	43	13	20	23	1.87
14894--14949	20	3.1	18	78	21	64	76	0	21	1	0.87
14900--14949	15	3.3	15	81	13	59	78	0	20	2	0.86
14894--14964	24	3.0	24	78	13	60	77	0	18	4	0.93
15630--15691	18	3.4	18	73	18	56	72	0	20	6	1.06
15702--15805	41	2.5	41	81	7	122	43	14	22	20	1.87
16247--16541	133	2.2	131	79	7	301	28	15	17	38	1.90
17220--17302	34	2.6	34	81	14	97	43	7	9	39	1.65
17220--17302	29	2.7	30	83	11	96	43	7	9	39	1.65
19767--19807	2	20.5	2	100	0	82	48	0	0	51	1.00
19969--20445	81	5.9	81	92	1	778	30	22	11	35	1.90
19969--20445	161	3.0	162	93	1	798	30	22	11	35	1.90
19969--20442	242	2.0	242	92	0	797	30	22	11	35	1.89
22806--23020	47	4.6	47	96	0	385	36	7	20	34	1.81
23491--23527	13	2.8	13	92	8	58	16	32	13	37	1.87
23969--24127	56	2.8	57	84	7	184	33	21	10	33	1.88
24644--24696	21	2.6	20	85	14	65	22	22	16	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24645--24697	20	2.6	21	85	14	67	22	22	16	37	1.94
24755--24789	15	2.3	15	90	0	52	17	17	25	40	1.90
34209--34275	11	5.6	12	77	16	59	0	7	10	82	0.85
34209--34276	12	5.5	13	77	15	65	0	7	10	82	0.85
34209--34250	13	3.2	13	93	0	66	0	2	9	88	0.61
34209--34278	35	2.0	35	88	0	104	0	7	11	81	0.87
34631--34667	15	2.4	16	90	4	58	70	5	10	13	1.32
35918--35943	3	8.7	3	100	0	52	65	0	34	0	0.93
40805--40837	17	1.9	17	88	11	50	60	12	6	21	1.53
42009--42136	2	63.5	2	65	18	52	43	3	3	48	1.39
42152--42193	22	1.9	22	90	0	66	45	4	4	45	1.45
42486--42695	65	3.3	63	80	11	221	30	24	19	25	1.98
42667--42715	19	2.6	19	84	9	57	24	28	20	26	1.99
43421--43485	29	2.2	29	91	0	112	43	9	4	43	1.57
43478--43522	13	3.5	13	90	0	72	51	8	4	35	1.54
43529--43580	26	2.0	26	85	7	70	42	1	9	46	1.47
43576--43689	18	5.9	18	71	18	61	44	7	2	45	1.44
43595--43672	27	2.9	27	84	3	86	41	7	3	47	1.50
43595--43702	20	4.9	20	73	21	74	43	7	3	45	1.49
43755--43807	18	2.8	19	77	8	63	39	7	7	45	1.61
43771--43936	18	9.2	18	70	23	118	39	9	9	42	1.68
43726--43905	51	3.2	59	80	12	155	40	8	8	41	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43818--43936	51	2.3	51	100	0	238	41	10	7	41	1.67
43933--44152	24	9.0	24	69	21	86	45	8	4	42	1.53
43946--44572	20	33.7	19	65	23	110	45	6	5	42	1.54
43915--44002	33	2.7	33	94	0	149	46	6	4	42	1.51
44157--44187	15	2.1	15	94	5	55	45	6	0	48	1.28
44251--44563	18	18.2	18	71	16	218	45	6	6	42	1.55
44272--44598	51	6.4	50	74	14	217	44	6	6	42	1.56
44309--44554	69	3.6	69	93	1	399	45	5	6	42	1.54
44326--44622	84	3.5	84	78	12	250	45	6	5	42	1.53
44673--44756	21	4.1	20	66	29	52	48	4	10	35	1.59
44658--44804	61	2.4	61	88	1	213	49	6	8	35	1.59
45025--45195	92	1.8	92	85	7	238	33	29	4	32	1.76
45510--45596	24	3.6	24	85	0	111	45	40	5	8	1.57
45538--45581	6	7.3	6	85	10	63	47	47	2	2	1.27
45510--45590	12	6.8	12	72	0	72	45	40	6	7	1.57
45575--45633	18	3.4	17	85	2	73	40	38	8	11	1.72
45518--45623	24	4.5	23	80	4	104	44	40	6	8	1.61
48511--48557	2	23.5	2	100	0	94	48	0	0	51	1.00
50396--50473	23	3.4	23	92	0	129	25	12	25	35	1.92
51066--51125	18	3.2	18	70	9	57	60	6	0	33	1.23
51235--51269	16	2.2	16	89	0	52	42	17	20	20	1.89
51494--51569	2	38.0	2	100	0	152	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54148--54186	17	2.3	17	90	0	60	51	0	0	48	1.00
54608--54719	35	3.2	35	86	5	147	41	20	0	36	1.59
55735--55847	35	3.2	34	88	5	163	33	0	23	42	1.60
64024--64062	20	2.0	20	90	10	62	28	0	0	71	0.86
70563--70618	25	2.2	25	100	0	112	41	5	19	33	1.74
70575--70618	15	3.3	15	70	29	53	40	4	20	34	1.73
70769--70803	18	1.9	18	94	0	61	17	20	34	28	1.95
74416--74483	3	23.7	3	77	16	65	29	1	0	69	0.98
74405--74488	20	4.2	19	77	15	80	27	2	1	69	1.09
74408--74465	30	2.0	29	82	3	71	29	3	1	65	1.19
74420--74481	22	2.7	23	85	11	76	30	1	0	67	1.00
74427--74494	18	3.8	19	74	23	67	30	2	0	66	1.07

Tables:   1

The End!