genome.fa.s1938.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001938.1 Hibiscus syriacus cultivar Beakdansim tig00003923_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75123

Tables:   1   

This is table  1  of  1  ( 77 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2603--2655	23	2.3	23	93	0	88	39	1	7	50	1.41
2904--2943	11	3.5	11	83	6	53	47	5	7	40	1.54
3353--3394	20	2.1	20	95	0	75	50	9	14	26	1.73
3980--4022	19	2.3	19	95	0	77	27	20	23	27	1.99
4746--4796	24	2.1	24	89	7	77	64	27	0	7	1.21
6721--6797	23	3.6	21	78	14	77	31	19	20	28	1.97
12712--13146	216	2.0	217	95	3	775	44	13	9	31	1.76
14593--14655	6	10.5	6	73	0	54	3	4	50	41	1.39
14593--14655	18	3.5	18	86	0	90	3	4	50	41	1.39
15410--15446	6	6.3	6	87	6	58	54	0	0	45	1.00
15416--15449	17	2.0	17	100	0	68	58	0	0	41	0.98
15451--15505	21	2.5	22	88	5	76	45	1	1	50	1.22
16176--16246	34	2.1	33	86	2	97	32	15	28	23	1.95
17220--17329	3	36.0	3	87	10	145	65	0	34	0	0.93
19203--19271	19	3.9	18	75	22	65	24	33	18	23	1.97
19223--19285	15	3.9	15	78	15	63	23	31	20	23	1.98
19204--19306	34	3.0	34	88	1	143	24	32	19	24	1.98
22419--22525	19	5.8	19	83	9	123	22	30	21	25	1.99
22918--22988	34	2.1	33	89	2	106	30	15	29	23	1.95
23458--23496	20	2.0	19	85	5	51	76	7	5	10	1.13
23500--23535	14	2.5	14	90	4	54	75	0	0	25	0.81
23540--23788	126	2.0	126	96	3	461	54	10	16	18	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23849--23881	4	8.2	4	87	12	50	72	3	0	24	0.98
23896--23947	19	2.7	19	80	11	54	59	1	1	36	1.19
25114--25186	38	1.9	38	100	0	146	26	12	20	41	1.87
26008--26581	124	4.6	124	90	0	857	26	13	25	35	1.93
26665--26888	64	3.6	62	83	8	296	30	13	20	35	1.91
26726--26839	57	2.0	57	91	3	185	34	13	21	31	1.91
26665--26888	121	1.9	121	89	0	349	30	13	20	35	1.91
31112--31161	17	2.7	20	76	20	63	76	2	4	18	1.04
31113--31231	5	23.0	5	67	21	59	73	4	5	17	1.18
31113--31231	11	11.5	10	68	19	59	73	4	5	17	1.18
31120--31158	16	2.5	15	84	12	51	79	2	2	15	0.95
31471--31522	19	2.7	19	80	11	54	59	1	1	36	1.19
32630--32720	36	2.5	36	83	0	119	46	9	3	40	1.54
32699--32749	15	3.3	15	71	15	50	50	3	3	41	1.39
32731--32772	22	2.0	21	90	9	68	50	9	4	35	1.56
32817--32861	14	3.3	14	84	3	56	40	6	6	46	1.56
32848--32974	20	5.9	21	76	14	116	43	5	7	44	1.54
32858--32917	24	2.5	24	83	5	68	48	3	6	41	1.46
32848--32974	63	2.0	63	84	6	166	43	5	7	44	1.54
34217--34311	49	2.0	49	87	2	138	36	8	6	48	1.59
34221--34323	49	2.1	48	83	5	127	37	8	6	46	1.61
34295--34372	37	2.2	36	81	4	86	37	8	8	44	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34460--34512	7	7.6	7	78	0	52	18	0	30	50	1.47
34460--34512	14	3.8	14	79	0	61	18	0	30	50	1.47
34673--34805	13	10.2	13	67	14	69	43	6	5	45	1.51
34682--34753	28	2.7	26	75	8	72	44	11	4	40	1.59
34741--34794	18	3.0	19	84	10	69	46	1	5	46	1.37
34925--35093	2	89.0	2	64	20	51	45	5	1	47	1.36
34953--35052	15	6.7	15	67	15	55	48	7	1	44	1.36
35607--35673	33	2.0	33	94	0	116	32	29	11	25	1.92
37958--38026	36	1.9	36	88	5	104	46	4	1	47	1.31
42427--42573	32	4.6	32	80	0	150	39	15	15	29	1.89
42919--42961	18	2.4	19	84	7	54	69	4	6	18	1.29
47498--47567	12	5.8	12	76	6	70	51	17	14	17	1.77
47498--47567	24	2.9	24	78	0	86	51	17	14	17	1.77
47530--47604	24	3.1	24	75	7	64	46	17	16	20	1.84
48732--48767	18	2.0	18	88	0	54	30	16	0	52	1.44
49788--49885	29	3.4	28	81	2	106	45	23	6	24	1.75
52490--52533	18	2.4	19	81	7	56	70	4	6	18	1.27
55507--55556	20	2.3	22	86	10	68	50	4	8	38	1.51
56249--56458	103	2.0	103	86	1	287	36	9	12	41	1.75
57948--58002	19	2.8	20	80	8	67	25	16	23	34	1.95
62127--62192	25	2.7	25	80	13	66	45	1	0	53	1.09
63231--63302	14	5.8	13	75	24	75	56	12	12	18	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63231--63315	24	3.5	24	95	3	143	55	12	12	18	1.69
63243--63314	10	6.2	11	74	25	60	56	13	11	18	1.66
63801--63843	19	2.2	19	83	8	50	44	2	4	48	1.36
69842--69866	5	5.0	5	100	0	50	40	0	0	60	0.97
73396--73480	31	2.9	28	78	16	91	34	7	5	52	1.53
73405--73480	31	2.5	31	91	0	116	34	5	5	55	1.45
73592--73668	29	2.6	28	79	16	86	57	2	3	36	1.31
73539--73740	54	3.7	54	75	10	162	53	1	4	39	1.34
73590--73694	27	3.7	26	79	14	93	56	1	4	37	1.32
73652--73720	27	2.6	26	80	11	70	52	1	5	40	1.34
73653--73730	24	3.1	24	78	9	59	51	1	6	41	1.36

Tables:   1

The End!