genome.fa.s1939.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001939.1 Hibiscus syriacus cultivar Beakdansim tig00003925_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59572

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3383--3437	30	1.9	28	85	10	76	50	9	9	30	1.65
10189--10347	79	2.0	79	90	0	246	28	23	18	28	1.98
13921--14025	37	2.8	37	83	0	129	40	14	14	31	1.86
14431--14460	14	2.1	15	93	6	53	30	0	0	70	0.88
14551--14576	13	2.0	13	100	0	52	23	7	0	69	1.14
14523--14591	31	2.3	30	78	14	70	24	8	2	63	1.37
14665--14782	25	4.4	26	71	20	68	31	4	0	63	1.19
17510--17552	15	2.9	15	100	0	86	34	32	18	13	1.90
19199--19248	16	3.3	15	84	15	68	80	6	14	0	0.90
19199--19248	15	3.4	14	83	10	64	80	6	14	0	0.90
19199--19262	14	4.4	14	82	7	65	79	4	12	3	1.00
19864--19919	22	2.5	22	97	0	103	35	25	12	26	1.91
20333--20369	18	2.0	19	89	5	58	21	5	27	45	1.73
20881--22153	106	12.0	106	91	0	1940	34	25	17	23	1.96
20881--22154	317	4.0	318	90	0	1951	34	25	17	23	1.96
20881--22153	211	6.0	212	90	0	1940	34	25	17	23	1.96
22902--23006	37	2.8	37	86	0	147	40	15	14	30	1.87
23655--23711	17	3.4	17	77	20	57	29	1	1	66	1.12
23700--23777	22	3.3	25	77	12	83	29	3	0	66	1.09
23678--23777	24	4.2	24	74	8	80	31	3	1	65	1.15
23659--23791	22	6.0	22	70	15	62	28	3	0	66	1.14
23700--23791	46	2.0	45	81	10	107	28	4	0	67	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23840--23905	12	5.6	11	75	15	53	13	9	1	75	1.10
23865--23915	12	4.1	12	90	10	68	9	9	0	80	0.91
23841--23917	33	2.2	37	84	11	101	14	7	1	76	1.06
25204--25251	19	2.5	20	86	3	62	47	6	14	31	1.69
29232--29310	4	19.0	4	75	12	70	65	2	2	29	1.18
29229--29309	18	4.1	21	76	20	86	65	2	2	29	1.18
31888--31921	13	2.7	13	90	4	52	35	0	14	50	1.44
32218--32259	2	21.0	2	100	0	84	50	0	0	50	1.00
33056--33107	20	2.6	20	87	6	70	34	17	28	19	1.94
33795--34254	68	6.8	68	91	0	731	30	14	25	29	1.94
34341--34436	29	3.3	29	89	0	147	46	7	20	25	1.76
34909--34942	17	2.0	17	100	0	68	41	17	17	23	1.90
35185--35610	68	6.3	68	87	1	575	30	15	22	32	1.94
35185--35765	136	4.4	136	82	6	733	30	14	23	31	1.95
35197--35765	204	2.9	203	85	4	770	30	14	23	30	1.94
35555--35665	55	2.0	55	92	0	186	29	16	21	32	1.95
35487--35728	123	2.0	123	93	0	412	29	16	23	30	1.96
35419--35765	191	1.8	191	89	1	552	31	14	23	30	1.94
35610--35765	68	2.3	68	94	2	269	32	14	26	27	1.94
35717--35870	81	1.9	81	89	2	238	36	12	24	26	1.91
35840--35986	29	5.1	29	86	3	208	44	8	23	23	1.81
35840--35986	57	2.6	58	92	1	242	44	8	23	23	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44115--44377	108	2.4	108	90	0	391	36	14	13	35	1.85
49562--51378	914	2.0	909	87	4	2668	32	17	19	30	1.95
53313--53350	20	1.9	20	88	0	58	13	26	36	23	1.91

Tables:   1

The End!