genome.fa.s1940.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001940.1 Hibiscus syriacus cultivar Beakdansim tig00003931_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  114805

Tables:   1   

This is table  1  of  1  ( 77 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1301--1347	2	23.5	2	95	0	85	46	2	0	51	1.13
4704--4913	65	3.2	66	80	8	202	31	24	17	26	1.97
4885--4933	19	2.6	19	84	9	57	24	28	20	26	1.99
4754--4933	65	2.8	63	78	13	179	30	24	18	27	1.98
10730--10812	23	3.7	23	73	14	82	20	25	21	32	1.98
10753--10817	21	3.0	20	71	16	67	18	24	21	35	1.96
10731--10817	44	2.0	45	93	2	149	19	25	20	34	1.96
12323--12375	21	2.6	21	81	3	54	7	47	13	32	1.70
15340--15373	12	2.7	13	86	9	52	44	8	5	41	1.60
15486--15522	19	2.1	18	85	14	51	45	10	5	37	1.62
20720--20789	36	1.9	36	91	0	113	21	20	22	35	1.96
20940--21029	42	2.1	42	89	0	135	28	22	22	26	1.99
21017--21041	13	1.9	13	100	0	50	24	20	24	32	1.98
24336--24384	22	2.2	22	82	7	64	32	30	28	8	1.86
25060--25254	97	2.0	97	96	2	365	25	14	24	35	1.93
25277--25331	23	2.3	23	90	3	83	27	14	21	36	1.93
32534--32573	16	2.3	18	87	8	57	60	10	7	22	1.54
34647--34713	34	2.0	34	85	11	93	19	19	17	43	1.89
37123--38075	185	5.1	184	80	4	947	38	10	17	33	1.84
37123--38053	369	2.5	368	80	4	1032	38	10	17	34	1.84
38168--38383	72	3.0	72	80	3	263	40	6	17	35	1.76
38168--38431	73	3.6	72	78	5	255	41	6	17	34	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38778--39104	104	3.3	98	79	11	337	42	12	11	33	1.78
39303--39460	21	7.8	20	72	7	86	38	25	17	18	1.92
39427--39640	20	10.6	20	83	5	252	34	26	19	19	1.96
39787--39841	22	2.5	22	81	0	74	23	40	16	20	1.91
40023--40091	31	2.2	33	86	5	97	11	21	18	47	1.80
40170--40247	41	1.9	41	97	0	147	44	16	25	12	1.83
40171--40246	21	3.7	21	83	3	109	46	17	25	11	1.82
40231--40287	14	3.7	14	70	20	51	45	22	22	8	1.80
40223--40303	33	2.5	33	93	0	135	48	22	20	8	1.77
40299--40404	19	6.1	19	74	20	115	10	22	20	46	1.81
40321--40377	14	3.7	14	72	20	51	8	22	22	45	1.80
40304--40399	33	2.9	33	96	0	174	9	21	21	46	1.79
43204--43228	12	2.1	12	100	0	50	0	28	0	72	0.86
43403--43449	24	2.0	24	87	8	69	38	21	14	25	1.92
44132--44381	20	12.5	20	87	1	259	19	18	24	37	1.94
44348--44445	21	4.7	21	75	6	74	22	18	21	37	1.94
44348--44446	42	2.4	43	77	11	100	22	18	22	37	1.94
45054--45083	14	2.1	14	93	0	51	50	6	0	43	1.28
47217--47313	11	8.6	11	78	10	90	29	22	22	24	1.99
47217--47314	23	4.4	22	89	3	124	29	23	22	24	1.99
47217--47313	34	2.9	33	78	7	97	29	22	22	24	1.99
47976--48031	12	4.9	11	76	10	51	73	5	0	21	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48421--48477	6	9.3	6	90	1	60	5	56	3	35	1.39
49495--49555	25	2.4	25	91	0	95	49	14	8	27	1.72
50450--50482	16	2.1	16	88	5	50	24	24	9	42	1.83
50470--50507	20	1.9	20	88	0	58	26	26	10	36	1.89
53161--53206	23	2.0	23	100	0	92	26	13	8	52	1.69
55980--56030	22	2.3	22	83	6	68	37	21	15	25	1.93
56507--56580	21	3.5	21	98	0	139	31	22	21	24	1.99
57257--57336	23	3.4	23	91	1	124	53	1	33	11	1.44
58334--58381	21	2.3	21	82	7	62	43	22	16	16	1.87
75773--75855	42	2.0	42	85	0	112	26	15	24	33	1.95
75787--75868	42	2.0	42	87	0	119	26	15	24	32	1.95
76243--76267	13	1.9	13	100	0	50	32	24	20	24	1.98
76721--76980	53	4.9	53	91	0	421	30	20	27	20	1.98
83684--83722	20	2.0	20	89	0	60	43	5	12	38	1.65
83749--84247	102	5.0	102	83	6	624	41	14	11	32	1.81
85098--85129	15	2.2	14	94	5	55	34	0	3	62	1.11
85425--85481	25	2.3	23	77	16	60	56	0	1	42	1.10
85385--85473	42	2.1	42	83	8	110	50	0	2	47	1.13
85479--85567	22	4.1	21	74	25	80	48	0	2	49	1.13
85496--85580	39	2.2	39	95	0	152	49	0	1	49	1.08
89187--89608	210	2.0	210	99	0	835	30	14	16	38	1.88
93000--93062	23	3.0	20	71	15	63	52	15	4	26	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93157--93210	29	1.9	27	92	3	81	53	11	12	22	1.70
101757--101805	23	2.1	23	85	7	64	67	12	6	14	1.40
102035--102087	27	2.0	27	85	7	72	64	11	1	22	1.36
103629--103658	15	2.1	14	93	6	51	70	0	0	30	0.88
103684--103723	3	13.0	3	94	5	71	67	0	0	32	0.91
104260--104406	45	3.3	45	96	0	267	35	16	11	36	1.85
105347--105446	42	2.4	41	76	3	110	32	21	22	25	1.98
104964--105704	241	3.1	240	87	3	1058	35	16	16	30	1.92
105591--105691	42	2.4	41	77	3	112	31	20	22	24	1.98
109635--109664	15	2.0	15	100	0	60	33	26	6	33	1.83
110362--110416	23	2.4	23	93	0	92	29	20	29	21	1.98

Tables:   1

The End!