genome.fa.s1942.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001942.1 Hibiscus syriacus cultivar Beakdansim tig00003935_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  81246

Tables:   1   

This is table  1  of  1  ( 63 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2211--2463	45	5.6	45	85	4	332	25	22	11	40	1.87
11906--11959	12	4.3	12	78	15	56	3	18	1	75	1.03
11904--11960	19	3.1	18	76	20	55	3	17	1	77	1.00
12997--13031	15	2.3	15	85	0	52	20	28	25	25	1.99
19765--19799	15	2.2	17	90	10	56	62	8	5	22	1.45
21868--21913	18	2.6	18	85	0	65	21	50	19	8	1.75
21890--21919	13	2.3	13	94	0	51	20	46	20	13	1.83
22593--22665	36	2.0	36	91	0	119	43	6	20	28	1.77
24460--24550	24	3.8	25	80	8	73	19	9	17	52	1.72
26608--26801	66	2.9	65	82	4	201	41	14	19	25	1.89
26944--27066	37	3.4	36	72	11	108	35	16	19	28	1.93
30563--30624	24	2.6	22	70	22	54	48	6	4	40	1.50
37075--37111	19	1.9	19	88	0	56	37	16	18	27	1.92
37052--37266	104	2.1	104	100	0	430	36	19	20	23	1.95
37179--37215	19	1.9	19	88	0	56	37	16	18	27	1.92
38051--38080	15	2.0	15	93	0	51	40	23	10	26	1.86
39780--39878	51	2.0	51	82	9	125	54	7	36	2	1.39
42281--42368	2	44.5	2	82	2	106	43	1	0	55	1.07
42425--42606	85	2.1	84	84	4	231	32	17	20	29	1.95
47531--47595	8	7.9	8	80	19	80	0	6	9	84	0.77
47531--47588	25	2.3	25	81	0	62	0	6	10	82	0.83
47520--47597	35	2.2	36	84	6	106	0	7	11	80	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47520--47595	17	4.4	18	87	11	106	0	7	10	81	0.87
52263--52325	8	7.8	8	80	16	76	0	6	9	84	0.79
52252--52326	16	4.4	17	88	11	102	0	8	12	80	0.92
52252--52326	34	2.2	32	86	11	98	0	8	12	80	0.92
56989--57054	8	8.0	8	82	12	80	0	6	10	83	0.81
56978--57052	15	4.4	17	82	14	84	0	8	10	81	0.88
56978--57052	18	4.3	18	85	9	86	0	8	10	81	0.88
62697--62731	17	2.1	17	100	0	70	65	0	11	22	1.24
63624--63670	5	8.8	5	82	13	58	17	4	2	76	1.04
63630--63670	17	2.5	16	84	7	55	17	4	2	75	1.08
63706--63756	10	5.4	9	75	15	50	11	3	3	80	0.98
64466--64499	17	1.9	18	88	5	52	14	17	17	50	1.79
65559--65589	14	2.1	15	94	5	55	16	6	3	74	1.16
67939--68058	20	6.4	20	73	20	116	27	21	10	40	1.87
67909--68027	55	2.1	57	89	4	179	29	19	12	38	1.88
67962--68144	36	5.3	36	80	12	240	30	20	11	37	1.88
68063--68171	29	3.5	29	69	20	94	31	18	11	39	1.85
68032--68197	65	2.6	65	95	0	296	28	19	12	39	1.88
68159--68367	36	5.8	36	81	2	231	23	21	12	42	1.87
68158--68367	73	2.9	72	86	0	267	23	20	12	42	1.87
68438--68589	33	4.6	33	94	3	261	40	19	9	30	1.83
68586--68823	82	3.0	82	85	3	306	29	23	21	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70090--70154	9	7.8	8	73	14	51	18	4	1	75	1.05
70075--70160	13	6.7	13	69	14	54	17	6	2	73	1.16
72252--72328	35	2.2	35	88	0	109	42	19	1	36	1.60
72534--72594	3	20.3	3	81	18	74	39	0	0	60	0.97
72534--72594	13	5.1	12	86	13	74	39	0	0	60	0.97
72534--72592	18	3.6	18	78	21	83	38	0	0	61	0.96
73374--73446	23	3.2	23	90	0	110	38	20	5	35	1.76
73464--73508	22	2.0	22	86	0	63	37	11	8	42	1.72
73865--73937	23	3.2	23	86	0	101	39	19	4	36	1.71
72972--74773	491	3.7	489	96	1	3241	40	10	7	41	1.69
72972--74773	979	1.8	980	95	0	3304	40	10	7	41	1.69
74362--74425	23	2.8	23	95	0	110	35	23	4	35	1.76
75888--75912	12	2.1	12	100	0	50	44	16	0	40	1.47
76424--77161	200	3.7	200	94	1	1302	29	18	15	36	1.92
76424--77161	398	1.9	400	94	1	1313	29	18	15	36	1.92
77273--77322	19	2.6	19	96	0	91	54	10	2	34	1.45
78728--78781	18	3.2	17	70	21	51	3	42	0	53	1.18
78728--78778	15	3.3	15	75	17	50	3	43	0	52	1.19
79058--79122	21	3.1	21	93	0	103	16	30	10	41	1.83

Tables:   1

The End!