genome.fa.s1943.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001943.1 Hibiscus syriacus cultivar Beakdansim tig00003936_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61000

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2847--3470	180	3.5	180	86	5	845	28	15	12	44	1.82
3403--3601	93	2.1	94	92	3	339	24	16	13	46	1.82
3497--3784	112	2.6	112	92	2	472	26	14	12	46	1.80
5195--5244	20	2.5	20	93	0	82	34	18	0	48	1.48
5201--5244	10	4.4	10	79	0	52	34	20	0	45	1.51
6045--6120	40	1.9	40	91	5	127	34	21	14	30	1.93
6349--6393	14	3.2	14	93	0	81	6	15	28	48	1.70
6574--6617	23	1.9	23	95	0	79	13	6	15	63	1.49
6673--6698	10	2.6	10	100	0	52	50	19	19	11	1.77
8887--8942	23	2.4	23	93	0	94	26	16	16	41	1.88
13032--13103	29	2.4	30	93	2	119	20	38	27	12	1.89
13151--13205	10	5.5	10	75	16	60	27	38	23	10	1.88
13150--13205	20	2.8	20	100	0	112	26	37	25	10	1.88
13210--13276	33	2.1	32	86	5	91	28	22	38	10	1.87
13309--13399	33	2.8	33	87	0	119	8	35	27	28	1.87
13409--13484	29	2.6	29	100	0	152	10	25	44	19	1.82
18966--19009	19	2.3	19	88	0	61	36	29	11	22	1.89
19054--19186	20	6.6	20	81	11	130	43	24	12	18	1.85
19302--19352	22	2.3	22	93	0	84	19	43	15	21	1.88
19718--19751	14	2.4	14	85	0	50	50	26	14	8	1.72
21843--21934	42	2.2	42	86	3	123	20	36	22	19	1.95
21843--21934	21	4.4	21	80	5	87	20	36	22	19	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23040--23115	21	3.7	20	84	5	80	23	35	19	21	1.96
23045--23136	42	2.2	42	84	3	114	21	36	21	19	1.95
24461--24615	65	2.3	66	83	10	190	29	1	14	53	1.52
24493--24618	65	2.0	65	90	4	202	31	0	15	51	1.49
24676--24748	20	3.7	20	90	3	103	41	20	20	17	1.91
25095--25135	18	2.3	18	91	0	64	17	2	26	53	1.56
27568--27601	12	2.8	12	90	0	50	14	0	29	55	1.40
28197--28234	15	2.4	16	86	4	51	65	0	5	28	1.14
28372--28437	18	3.5	18	75	8	60	34	12	19	33	1.89
28367--28417	18	2.7	19	78	6	68	31	9	21	37	1.86
28407--28538	41	3.2	40	77	11	115	25	15	23	36	1.93
28430--28538	20	5.3	20	84	7	107	22	15	24	36	1.93
28587--28658	20	3.7	20	80	14	78	23	15	30	30	1.95
28612--28662	19	2.6	19	87	3	66	21	13	31	33	1.92
29847--29925	34	2.3	34	82	0	95	11	13	15	59	1.61
29852--29942	24	3.8	24	73	11	87	10	15	16	57	1.66
36813--36885	31	2.4	30	79	4	83	36	10	10	41	1.76
36974--37040	29	2.3	30	89	5	102	35	10	13	40	1.79
36969--37040	28	2.5	30	84	8	105	36	9	13	40	1.78
36973--37062	29	3.1	28	81	10	101	38	8	11	41	1.72
38591--38657	29	2.3	29	80	9	75	53	7	11	26	1.64
39285--39335	19	2.6	21	81	15	63	66	0	13	19	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46242--46315	25	2.9	25	82	11	80	39	2	1	56	1.22
46278--46334	28	2.1	28	87	9	84	42	5	0	52	1.24
51204--51561	131	2.7	131	86	1	477	39	16	10	32	1.83
53497--53524	3	9.3	3	100	0	56	67	0	0	32	0.91
53987--54013	4	6.8	4	100	0	54	25	0	0	74	0.83
54777--54867	43	2.1	44	81	2	103	32	21	12	32	1.90
56430--56534	40	2.6	40	86	4	149	54	7	13	24	1.65
56854--56894	21	2.0	21	95	0	73	46	0	12	41	1.41
57234--57286	21	2.5	21	73	11	63	43	5	1	49	1.37
59919--60195	136	2.0	135	95	2	493	32	23	10	32	1.89

Tables:   1

The End!