Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001944.1 Hibiscus syriacus cultivar Beakdansim tig00003938_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71172

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2421--2457
13
2.9
13
84
15
51
51
2
16
29
1.58
8685--8720
15
2.4
15
100
0
72
25
5
13
55
1.60
13426--13459
11
3.1
11
82
0
50
26
26
8
38
1.85
17764--17865
42
2.5
42
80
4
118
24
20
25
29
1.99
17696--18584
233
3.9
232
83
6
1094
32
15
19
32
1.93
18052--18488
218
2.0
218
84
4
578
33
16
18
32
1.93
17672--18619
451
2.1
457
82
5
1151
33
15
18
32
1.92
18866--19294
133
3.2
134
84
3
546
32
20
17
30
1.95
19446--19470
3
8.3
3
100
0
50
32
32
0
36
1.58
20320--20358
20
2.0
20
94
0
69
79
0
20
0
0.73
22452--22546
48
2.0
47
89
2
145
43
15
15
25
1.87
22645--22720
18
4.3
18
75
6
75
39
11
11
36
1.79
33051--33107
20
2.8
21
76
12
57
66
1
3
28
1.18
34323--34382
3
20.0
3
92
0
102
63
0
0
36
0.95
34516--35157
76
8.4
76
97
0
1160
34
22
19
23
1.96
36003--36079
22
3.5
22
94
0
136
41
10
11
36
1.76
37242--37486
75
3.3
74
82
5
269
30
23
17
28
1.97
38499--38707
114
1.8
114
89
0
328
30
17
17
33
1.94
43878--43936
7
8.1
7
75
7
55
61
8
16
13
1.56
43878--43950
15
5.1
14
77
11
76
58
8
16
16
1.60
43879--43940
22
2.9
22
97
2
117
58
9
17
14
1.63
43878--43954
29
2.6
30
82
8
97
57
7
18
16
1.63
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44133--44166
13
2.6
13
95
0
59
26
38
14
20
1.91
46287--46337
20
2.8
17
76
21
50
70
0
3
25
1.04
47115--47171
20
2.8
21
79
12
66
66
1
1
29
1.12
48398--48462
3
21.0
3
81
12
78
61
0
3
35
1.12
56061--56114
25
2.3
23
84
9
65
24
24
24
27
2.00
56068--56122
25
2.2
25
90
0
83
25
23
23
27
2.00
56206--56230
13
1.9
13
100
0
50
48
16
0
36
1.46
56304--56340
14
2.4
16
86
8
51
59
16
0
24
1.37
58853--58929
18
3.8
19
77
17
77
25
35
22
16
1.95
58856--58929
22
3.7
20
78
18
82
25
36
21
16
1.94
63770--63870
39
2.6
39
92
3
159
17
25
13
42
1.87
63809--64013
91
2.2
92
89
4
317
22
23
16
36
1.94
63679--64104
130
3.2
129
84
7
462
23
22
16
37
1.94
63939--64062
52
2.4
52
95
0
221
29
20
15
34
1.94
63991--64210
91
2.4
91
94
0
386
23
22
16
37
1.94
63848--64153
143
2.1
143
92
1
506
25
21
17
35
1.95
64600--64794
67
2.9
68
80
8
206
37
14
22
26
1.92
64615--64794
66
2.7
67
83
5
206
38
14
21
25
1.91
64678--65192
36
14.0
36
81
8
416
37
16
18
27
1.92
64615--64939
72
4.7
65
82
4
204
38
14
21
25
1.92
64745--65197
39
12.0
39
87
3
447
36
16
18
28
1.93

Tables:   1

The End!