genome.fa.s1945.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001945.1 Hibiscus syriacus cultivar Beakdansim tig00003939_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  113740

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
237--303	34	2.0	34	96	0	125	38	23	25	11	1.89
222--322	54	1.9	51	84	6	130	41	22	22	12	1.88
214--344	19	7.1	19	77	14	123	43	20	22	12	1.86
340--384	19	2.4	19	92	0	72	8	15	26	48	1.74
2936--2961	2	13.0	2	100	0	52	50	0	0	50	1.00
3460--3507	21	2.3	21	85	0	60	29	4	0	66	1.10
10726--10763	20	1.9	20	88	0	58	28	5	0	65	1.14
11736--11766	16	1.9	16	93	0	53	29	25	12	32	1.93
12224--12265	14	3.1	14	86	3	50	38	30	0	30	1.58
12556--12599	2	22.0	2	100	0	88	50	0	0	50	1.00
12710--12776	27	2.4	26	76	11	62	19	1	32	46	1.59
13046--13089	20	2.1	22	87	8	65	47	22	0	29	1.51
13037--13112	34	2.2	35	81	9	93	43	23	0	32	1.54
13080--13132	21	2.5	21	73	11	54	43	16	0	39	1.49
13584--13679	30	3.2	30	92	0	165	20	22	37	18	1.94
14233--14334	50	2.0	50	100	0	204	56	15	1	25	1.50
18045--18092	22	2.2	21	77	3	51	54	8	0	37	1.31
18613--18660	3	16.0	3	100	0	96	66	0	33	0	0.92
19464--19507	20	2.2	19	80	11	52	43	31	0	25	1.55
29456--29636	60	3.0	60	78	6	213	31	23	5	39	1.77
29529--29616	29	2.9	30	67	16	74	31	22	5	39	1.78
29811--29991	57	3.1	57	72	10	195	38	3	24	33	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29770--30019	57	4.3	59	68	13	167	38	4	22	34	1.75
29770--30019	117	2.1	117	94	0	430	38	4	22	34	1.75
34013--34070	23	2.5	23	85	0	80	29	8	13	48	1.73
37466--37677	79	2.7	79	76	10	216	33	6	23	36	1.81
41806--41854	20	2.4	20	86	3	62	22	22	18	36	1.95
41844--41957	41	2.8	40	84	2	165	37	20	20	21	1.94
41829--41960	61	2.2	61	85	0	192	35	20	18	25	1.95
41844--41957	20	5.7	20	86	2	165	37	20	20	21	1.94
43594--43647	24	2.2	24	93	0	90	40	20	18	20	1.91
43594--43661	24	2.8	24	84	0	64	38	20	17	23	1.93
44521--44639	21	5.8	21	93	3	188	41	16	21	20	1.90
44520--44736	21	10.6	21	81	6	185	35	17	21	25	1.95
44648--44701	20	2.7	20	82	2	63	24	18	16	40	1.90
46276--46322	20	2.4	19	86	10	60	27	25	14	31	1.95
47982--48073	46	2.0	46	100	0	184	39	6	17	36	1.76
49472--49532	31	2.0	31	83	6	79	40	1	3	54	1.27
50277--50363	31	2.8	30	81	10	95	54	3	1	41	1.25
52722--52765	22	2.1	22	91	8	74	50	0	0	50	1.00
53776--53849	23	3.4	22	76	12	64	48	2	0	48	1.15
57753--57819	27	2.5	27	87	0	107	29	13	5	50	1.65
63332--63777	227	2.0	226	92	3	754	45	8	7	39	1.62
63843--63888	20	2.3	19	89	10	74	54	10	17	17	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64010--64058	21	2.4	21	80	16	66	51	10	16	22	1.74
88367--88407	22	1.9	21	90	5	64	24	0	4	70	1.06
91478--91510	2	16.5	2	100	0	66	0	48	0	51	1.00
91510--91548	2	19.5	2	100	0	78	48	0	0	51	1.00
96146--96185	21	2.0	20	85	5	53	27	20	10	42	1.83
109907--109937	15	2.1	15	100	0	62	19	29	6	45	1.75
110026--110108	30	2.8	30	94	0	148	26	9	16	46	1.78
110735--110768	2	17.0	2	100	0	68	50	0	0	50	1.00

Tables:   1

The End!