Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001946.1 Hibiscus syriacus cultivar Beakdansim tig00003940_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  77466

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
19113--19283
60
2.9
61
81
7
174
36
20
5
37
1.77
19322--19476
59
2.6
60
78
9
165
40
5
20
32
1.76
19368--19498
60
2.2
59
78
11
142
36
5
22
35
1.77
37597--37694
49
2.0
49
100
0
196
36
8
24
30
1.85
47657--47692
2
18.0
2
100
0
72
50
0
0
50
1.00
48272--48351
30
2.8
28
77
11
81
53
13
8
23
1.68
48620--48678
16
3.7
16
95
0
109
57
22
11
8
1.61
48620--48685
32
2.1
32
91
0
105
57
21
10
10
1.62
49609--49667
10
5.5
10
79
15
64
54
23
11
10
1.67
49616--49680
24
2.7
24
90
0
103
53
26
10
9
1.65
49628--49681
14
4.1
14
77
18
62
51
25
12
9
1.70
49596--49667
34
2.1
34
94
0
126
55
20
11
12
1.67
55499--55552
21
2.5
21
93
3
90
40
16
16
25
1.89
55638--55663
4
6.5
4
100
0
52
73
0
26
0
0.84
58724--58767
22
2.0
22
90
0
70
38
4
27
29
1.76
67235--67296
31
2.0
30
84
9
81
45
12
17
24
1.84
67246--67311
31
2.1
31
83
5
80
42
13
18
25
1.87
70585--70660
30
2.5
30
97
0
143
28
26
23
21
1.99
71902--72227
43
7.7
43
85
3
385
22
23
19
34
1.97
71902--72227
85
3.9
85
82
5
367
22
23
19
34
1.97
72622--72986
183
2.0
182
91
4
594
42
3
9
44
1.53
73068--73108
21
2.0
21
85
0
55
21
26
24
26
2.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
75222--75262
18
2.2
18
86
8
55
63
0
4
31
1.15
76038--76116
2
41.0
2
92
7
137
49
0
0
50
1.00

Tables:   1

The End!