Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001948.1 Hibiscus syriacus cultivar Beakdansim tig00003942_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  119616

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1058--1130
32
2.2
32
85
2
92
39
2
21
35
1.68
3929--3994
34
1.9
34
96
0
123
50
10
9
30
1.68
4663--4749
45
1.9
45
92
0
147
32
29
3
34
1.74
9615--9651
2
18.5
2
100
0
74
48
0
0
51
1.00
10314--10352
21
1.9
20
94
0
60
41
15
15
28
1.87
11406--11473
26
2.6
26
97
0
127
38
17
17
26
1.92
17581--17615
4
8.8
4
100
0
70
74
0
0
25
0.82
21619--21662
2
22.0
2
100
0
88
50
0
0
50
1.00
23830--23884
20
2.8
20
100
0
110
50
5
23
20
1.68
24210--24349
29
4.9
28
89
5
183
40
17
21
20
1.92
24212--24349
57
2.4
57
85
7
181
39
18
21
21
1.92
24241--24380
29
4.9
28
83
6
102
43
15
18
22
1.87
40856--40923
27
2.5
27
92
0
118
10
22
1
66
1.30
43460--43488
10
2.9
10
100
0
58
27
10
20
41
1.85
47272--47321
20
2.5
20
77
6
57
26
20
16
38
1.92
54052--54093
21
2.0
21
90
0
66
26
23
16
33
1.96
56004--56060
29
1.9
30
82
10
73
45
8
17
28
1.78
58718--58836
26
4.7
25
79
7
123
26
15
26
31
1.95
58738--58852
51
2.3
51
93
0
194
26
15
28
28
1.96
58738--58852
25
4.5
26
79
4
126
26
15
28
28
1.96
59527--59557
12
2.6
12
94
0
53
45
3
0
51
1.17
59544--59997
22
20.6
21
84
4
521
42
0
9
47
1.36
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
59544--59997
44
10.3
44
90
1
579
42
0
9
47
1.36
60021--60079
31
1.9
31
92
0
100
44
8
5
42
1.57
61158--61240
39
2.2
39
84
4
107
28
14
6
50
1.66
63545--63573
14
2.1
14
100
0
58
27
0
20
51
1.47
66866--66987
60
2.0
60
100
0
244
22
18
9
48
1.78
74501--74541
19
2.2
19
86
8
57
14
2
17
65
1.37
74659--74716
26
2.2
26
90
0
89
29
8
20
41
1.82
74667--74719
26
2.0
26
96
0
97
24
11
20
43
1.85
76382--76545
58
2.8
56
72
12
143
37
6
12
43
1.69
82504--82542
19
2.1
19
90
0
60
20
25
25
28
1.99
82548--82590
22
2.0
21
90
4
68
20
48
20
9
1.77
89827--89857
13
2.3
14
94
5
55
22
45
22
9
1.81
89848--89891
22
2.0
22
100
0
88
18
50
22
9
1.75
89836--89879
17
2.5
18
92
3
72
20
50
22
6
1.72
91910--91943
10
3.3
10
92
8
59
0
14
0
85
0.60
91913--91942
11
2.7
11
89
0
51
0
10
0
90
0.47
94897--94923
14
1.9
14
100
0
54
74
0
11
14
1.08
96759--96791
16
2.1
16
100
0
66
57
6
12
24
1.57
107702--107752
21
2.4
21
96
0
93
35
17
5
41
1.74
109853--109956
28
3.7
28
80
8
113
41
5
0
52
1.25
109849--109962
57
2.0
57
84
6
151
41
6
0
52
1.26
109850--109949
29
3.5
27
76
15
87
42
5
0
53
1.23
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
110119--110188
30
2.4
28
85
4
86
48
1
10
40
1.45
110145--110198
28
1.9
28
85
7
74
53
0
5
40
1.24
110193--110266
31
2.4
31
86
4
96
55
1
6
36
1.35
110341--110414
29
2.5
29
88
2
112
54
0
5
40
1.24
110646--110795
75
2.0
75
100
0
300
42
16
16
25
1.87
113861--113944
3
29.0
3
76
11
86
30
0
3
65
1.10
115189--115248
23
2.5
24
81
2
68
28
3
6
61
1.37
115189--115256
24
2.9
24
78
6
68
29
2
5
61
1.34
116167--116199
2
16.5
2
100
0
66
48
0
0
51
1.00
117475--117558
43
1.9
44
87
2
125
32
11
22
33
1.91
117764--117801
19
2.0
20
84
5
51
18
10
7
63
1.50

Tables:   1

The End!