Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001949.1 Hibiscus syriacus cultivar Beakdansim tig00003943_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  104373

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
611--665
20
2.8
20
83
10
76
30
21
18
29
1.97
6393--6451
22
2.7
22
91
0
100
23
23
25
27
2.00
7556--7586
2
15.5
2
100
0
62
51
0
0
48
1.00
10302--10468
81
2.1
81
88
0
244
34
10
24
30
1.90
23150--23216
19
3.6
18
80
15
66
16
25
28
29
1.97
23165--23221
19
3.0
19
87
5
71
17
26
28
28
1.98
23215--23257
22
2.0
22
95
0
77
20
48
20
9
1.77
23247--23276
7
4.3
7
100
0
60
16
26
30
26
1.97
30403--30481
9
8.3
9
75
9
68
17
27
27
26
1.98
30402--30479
19
4.1
19
77
14
79
19
25
28
26
1.99
30392--30456
29
2.2
29
89
8
96
16
26
27
29
1.97
30440--30484
19
2.4
19
92
0
72
20
28
28
22
1.98
30478--30567
5
16.8
5
80
13
99
18
52
22
6
1.69
30495--30574
27
3.0
27
100
0
160
18
51
22
7
1.71
30478--30562
22
3.6
22
85
14
125
18
51
22
7
1.70
34902--34972
33
2.2
33
87
2
108
43
15
8
32
1.77
34967--35008
21
2.0
21
90
0
66
50
7
11
30
1.66
37677--37702
7
3.7
7
100
0
52
46
11
0
42
1.40
43440--43467
2
14.0
2
100
0
56
50
0
0
50
1.00
46866--46915
25
2.0
24
81
11
57
38
24
2
36
1.67
46980--47043
23
2.8
23
82
0
83
32
26
23
17
1.96
48737--48800
21
3.0
21
90
0
101
20
25
25
29
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53192--53235
23
1.9
23
85
0
61
63
6
0
29
1.20
54577--54610
14
2.4
14
100
0
68
5
0
17
76
0.98
55522--55580
26
2.3
25
80
8
73
57
3
5
33
1.37
60296--60383
36
2.5
36
87
5
117
46
9
9
35
1.67
60649--60741
36
2.6
36
81
3
107
45
11
9
33
1.74
60075--61018
362
2.6
348
79
7
912
37
14
13
34
1.86
76974--77392
132
3.2
132
80
4
434
34
16
24
25
1.96
76974--77393
44
9.5
44
70
6
231
34
16
24
25
1.96
78604--78695
13
7.2
12
83
11
103
0
21
0
78
0.76
78604--78695
6
14.3
6
87
10
103
0
21
0
78
0.76
79659--79696
17
2.4
15
87
12
58
26
26
26
21
1.99
80053--80215
81
2.0
81
97
0
308
22
27
25
25
2.00
82783--82813
16
1.9
16
93
0
53
48
3
22
25
1.66
92146--92200
23
2.5
21
82
8
56
70
3
7
18
1.25
92370--92409
2
20.5
2
94
5
73
50
0
0
50
1.00
92488--92514
2
13.5
2
100
0
54
48
0
0
51
1.00
98054--98093
22
1.9
21
85
10
55
32
5
0
62
1.17
98057--98174
30
4.0
29
76
12
98
35
7
0
55
1.34
98021--98295
151
1.8
151
84
4
376
38
8
1
51
1.42
98225--98296
29
2.4
29
83
2
90
33
4
4
58
1.36
98291--98349
30
2.0
30
86
6
84
35
3
1
59
1.24
98376--98455
28
2.9
27
83
5
88
56
1
5
37
1.29
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
98335--98455
29
4.1
30
77
10
106
54
1
7
36
1.38
101676--101716
2
20.5
2
100
0
82
51
0
0
48
1.00
103817--104371
113
4.9
113
79
9
548
28
19
13
38
1.90
104167--104225
17
3.1
17
70
25
55
22
23
5
49
1.70

Tables:   1

The End!