Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000195.1 Hibiscus syriacus cultivar Beakdansim tig00000348_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  78088

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5556--5604
12
3.9
13
75
20
50
69
4
6
20
1.27
5557--5609
25
2.2
24
86
6
72
71
3
7
16
1.24
9674--9704
2
15.5
2
100
0
62
51
0
0
48
1.00
9800--9870
33
2.2
33
92
0
115
39
1
7
52
1.38
10925--11377
123
3.7
123
89
1
678
24
19
15
40
1.90
10925--11377
245
1.8
246
89
2
705
24
19
15
40
1.90
11416--11617
36
5.6
36
77
4
217
37
10
18
33
1.86
11399--11615
73
3.0
73
90
1
328
36
11
18
32
1.87
12342--12420
22
3.6
22
94
0
140
36
12
16
34
1.87
19982--20053
36
2.0
36
88
0
108
27
9
20
41
1.84
21479--21533
23
2.4
23
76
11
60
41
0
1
56
1.10
21795--21826
2
16.0
2
93
0
55
46
0
0
53
1.00
21985--22013
4
7.2
4
100
0
58
75
0
0
24
0.80
27730--27812
41
2.0
41
92
0
139
30
19
14
36
1.91
38027--38089
33
1.9
33
96
0
117
55
17
15
11
1.68
41867--41911
6
7.5
6
82
0
54
31
2
15
51
1.56
41873--41911
12
3.2
12
88
0
60
30
0
15
53
1.42
48733--48775
16
2.7
15
82
10
50
67
2
0
30
1.03
48706--48771
27
2.5
26
81
16
73
59
1
1
37
1.16
62680--62716
18
2.1
18
100
0
74
37
10
5
45
1.62
67689--67751
31
2.0
31
93
0
108
34
17
19
28
1.94
74449--74573
62
2.0
62
95
0
223
25
26
22
25
2.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
76889--76922
17
2.0
17
94
0
59
20
11
20
47
1.81
76996--77024
13
2.2
13
100
0
58
6
6
0
86
0.72
77215--77252
2
20.0
2
84
10
53
50
2
0
47
1.15
77731--77777
21
2.2
22
88
3
69
27
0
6
65
1.16
77790--77820
6
5.0
6
92
7
53
51
0
0
48
1.00
77789--77817
13
2.2
13
100
0
58
58
0
0
41
0.98

Tables:   1

The End!