Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001950.1 Hibiscus syriacus cultivar Beakdansim tig00003946_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  83951

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
344--381
19
2.0
19
89
0
58
36
10
23
28
1.88
431--466
15
2.4
15
95
0
63
41
19
13
25
1.88
1592--1693
32
3.2
32
82
0
132
32
10
21
35
1.88
1603--1697
32
3.0
32
84
0
136
33
10
21
34
1.87
2495--2553
30
2.0
30
93
6
102
33
5
16
44
1.70
3385--3428
21
2.2
20
84
8
54
34
6
4
54
1.47
7326--7357
3
10.7
3
100
0
64
31
34
0
34
1.58
7629--7657
2
14.5
2
100
0
58
51
0
0
48
1.00
9269--9308
20
2.0
20
95
4
73
42
5
0
52
1.23
12556--12588
9
3.8
9
92
4
50
57
0
3
39
1.14
14833--14882
22
2.3
22
85
0
64
32
2
4
62
1.25
14869--14919
8
6.3
9
76
21
51
45
1
0
52
1.12
14875--14924
15
3.4
14
77
22
50
48
2
0
50
1.12
14858--14919
32
2.0
31
84
9
81
41
1
0
56
1.09
15402--15432
14
2.3
14
94
5
55
38
0
0
61
0.96
22999--23172
93
1.9
93
82
7
219
33
21
18
26
1.96
27061--27177
60
1.9
61
81
8
141
38
5
22
33
1.78
32559--32641
34
2.6
32
82
16
93
12
21
38
27
1.89
33569--33615
20
2.5
20
82
6
62
23
25
4
46
1.70
38974--39056
29
2.8
29
92
1
139
43
9
14
32
1.78
43740--43822
29
2.8
29
92
1
139
43
9
14
32
1.78
44398--44454
29
2.0
29
86
6
80
12
31
31
24
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44552--44676
33
3.8
33
88
3
137
10
37
28
23
1.88
44556--44676
10
11.1
10
68
19
64
10
37
28
23
1.88
44565--44676
33
3.4
33
87
3
145
11
36
28
23
1.90
46412--46634
41
5.4
41
72
6
180
29
19
17
33
1.95
49561--49698
18
7.6
17
69
18
66
76
7
2
13
1.12
49631--49702
29
2.5
26
80
14
72
79
9
0
11
0.95
49657--49702
22
2.1
22
83
0
56
82
8
0
8
0.84
49721--49774
21
2.6
21
82
5
56
70
3
12
12
1.30
49774--49825
2
26.0
2
100
0
104
50
0
0
50
1.00
49868--49909
21
2.0
22
85
4
59
78
9
4
7
1.08
49866--49942
34
2.2
34
88
4
109
75
7
6
10
1.19
49890--49958
14
5.2
13
76
10
50
76
4
5
13
1.11
51141--51224
16
5.1
16
77
14
64
75
0
3
21
0.96
51146--51224
26
3.1
26
82
12
101
74
0
2
22
0.93
51147--51214
3
21.7
3
78
11
57
73
0
2
23
0.97
51221--51328
42
2.7
39
80
12
130
49
3
3
43
1.38
51236--51361
42
3.3
38
81
13
136
52
4
3
39
1.38
51288--51376
33
2.7
33
74
8
101
48
5
3
42
1.43
51354--51580
36
6.2
36
77
6
199
42
8
4
44
1.54
51354--51581
37
6.2
36
80
9
178
42
8
4
44
1.55
51605--51650
2
23.5
2
95
4
85
50
0
0
50
1.00
52158--52215
21
2.8
21
86
0
80
24
6
20
48
1.74
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52566--52646
42
1.9
42
85
5
110
37
18
17
27
1.93
60195--60243
5
9.8
5
88
0
53
8
40
34
16
1.78
69205--69259
20
2.8
20
91
5
85
25
12
29
32
1.93
72906--73076
57
3.0
57
83
0
198
35
28
20
15
1.94
77085--77256
57
3.0
57
88
1
247
34
28
20
16
1.94
80710--80761
19
2.7
19
90
0
86
17
21
26
34
1.95

Tables:   1

The End!