genome.fa.s1951.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001951.1 Hibiscus syriacus cultivar Beakdansim tig00003947_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  83317

Tables:   1   

This is table  1  of  1  ( 91 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
183--211	10	2.9	10	100	0	58	79	0	0	20	0.74
1586--1633	2	24.0	2	91	8	80	50	2	0	47	1.12
4208--4313	30	3.5	30	88	2	151	19	23	20	35	1.96
4660--4736	25	3.1	24	83	10	93	42	0	20	36	1.53
4860--4929	25	2.8	23	85	10	86	42	0	17	40	1.49
5546--5587	2	21.0	2	100	0	84	50	0	0	50	1.00
8157--8198	19	2.3	19	87	4	59	61	4	4	28	1.36
9446--9480	13	2.7	13	100	0	70	8	45	5	40	1.58
13113--13142	2	15.0	2	92	0	51	50	3	0	46	1.18
13169--13349	37	4.9	37	81	10	185	46	3	5	43	1.45
13559--13651	21	4.6	20	78	4	96	38	18	24	18	1.92
13556--13651	41	2.3	41	98	0	183	39	17	23	18	1.92
13559--13671	20	5.6	20	75	7	102	38	18	23	19	1.93
13637--13714	41	1.9	41	83	0	102	41	20	16	21	1.91
13682--13733	20	2.6	20	93	0	86	26	28	19	25	1.98
14289--14333	19	2.4	19	88	0	63	48	24	15	11	1.77
14329--14532	19	11.1	19	79	13	203	12	22	21	43	1.86
14334--14532	33	5.4	38	79	13	170	12	21	21	44	1.85
14475--14532	20	2.9	20	80	10	64	13	24	18	43	1.87
16589--16655	21	3.2	21	66	6	55	23	35	20	19	1.95
16533--16655	42	2.9	42	80	4	106	22	35	17	23	1.95
18014--18049	14	2.6	14	95	0	63	30	0	25	44	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18228--18345	19	6.7	19	66	19	76	13	23	20	42	1.88
18232--18325	33	2.8	33	98	0	179	12	24	19	43	1.85
20612--20636	12	2.1	12	100	0	50	0	28	0	72	0.86
22114--22150	14	2.6	14	86	0	56	48	21	0	29	1.50
23998--24050	20	2.7	20	100	0	106	49	26	11	13	1.75
23998--24064	20	3.3	20	91	0	80	46	26	11	14	1.80
23998--24083	20	4.3	20	89	0	73	43	25	16	15	1.87
24093--24149	14	3.9	14	82	13	78	49	26	15	8	1.74
24094--24154	31	2.0	31	100	0	122	49	26	16	8	1.73
24161--24256	19	5.6	17	72	21	78	11	19	22	45	1.82
24183--24240	14	3.9	14	79	16	71	8	17	25	48	1.75
24166--24256	32	2.8	33	94	3	166	10	18	23	47	1.80
24241--24284	20	2.2	20	88	4	63	18	25	20	36	1.95
24250--24295	20	2.3	20	84	0	56	17	21	23	36	1.94
24767--24811	18	2.5	18	85	0	63	15	15	42	26	1.87
26129--26166	20	1.9	20	88	0	58	50	21	15	13	1.78
26430--26473	22	2.0	22	95	0	79	18	15	45	20	1.85
26661--26713	20	2.7	20	93	0	88	24	18	28	28	1.98
26681--26758	41	1.9	41	84	5	104	23	16	20	39	1.92
26744--26836	20	4.6	20	78	4	96	18	24	18	38	1.92
26744--26839	41	2.3	41	98	0	183	18	23	17	39	1.92
27056--27159	37	2.8	37	76	13	108	44	2	4	48	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27056--27161	38	2.9	39	74	14	100	44	2	4	48	1.38
27177--27209	17	1.9	17	93	0	57	21	3	0	75	0.93
27191--27216	13	2.0	13	100	0	52	23	7	0	69	1.14
28223--28262	19	2.2	18	90	4	62	20	5	5	70	1.26
28353--28404	22	2.4	21	83	6	59	11	7	7	73	1.26
28465--28493	4	7.2	4	100	0	58	24	0	0	75	0.80
33024--33407	81	4.7	82	78	7	413	28	24	21	25	1.99
32995--33402	165	2.5	165	87	1	611	28	24	21	25	1.99
34238--34287	24	2.1	24	85	7	66	22	2	16	60	1.46
35115--36127	165	6.2	164	90	0	1456	29	24	20	24	1.99
35119--36096	329	3.0	329	90	1	1496	29	24	20	25	1.99
36599--36638	2	20.0	2	89	0	62	47	2	0	50	1.14
36665--36944	35	7.8	36	77	13	256	46	3	4	45	1.40
36653--36944	106	2.7	104	80	9	252	46	3	4	44	1.42
36667--36944	73	3.9	68	77	13	249	46	3	4	45	1.40
36964--36996	17	1.9	17	93	0	57	21	3	0	75	0.93
36978--37003	13	2.0	13	100	0	52	23	7	0	69	1.14
38111--38138	3	9.3	3	100	0	56	32	0	0	67	0.91
38182--38233	22	2.4	21	83	6	59	9	7	9	73	1.27
40498--40530	2	16.5	2	100	0	66	48	0	0	51	1.00
42131--42190	27	2.2	27	96	0	111	21	35	21	21	1.96
51271--51305	11	3.4	11	84	15	56	82	0	8	8	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51272--51305	9	3.6	9	92	8	50	82	0	8	8	0.85
52077--52894	94	8.4	95	87	7	1158	33	24	18	23	1.97
52077--52894	200	4.2	189	88	6	1154	33	24	18	23	1.97
52473--52628	43	3.4	43	66	13	123	33	25	18	21	1.96
52077--52894	294	2.8	294	95	1	1429	33	24	18	23	1.97
54924--54960	2	18.5	2	100	0	74	48	0	0	51	1.00
67306--67387	15	5.5	15	86	2	112	36	7	20	35	1.81
67300--67387	45	2.0	44	90	2	140	38	6	21	32	1.80
67306--67387	30	2.8	30	92	1	130	36	7	20	35	1.81
67370--67419	20	2.5	20	100	0	100	40	10	16	34	1.81
67615--67710	28	3.3	28	79	17	99	52	2	1	44	1.19
67619--67780	31	5.4	30	72	16	90	51	1	1	45	1.19
67734--67779	10	4.5	10	78	21	51	58	0	0	41	0.98
67735--67791	22	2.6	22	84	10	73	54	0	0	45	0.99
67742--67791	21	2.3	21	86	10	66	54	0	0	46	1.00
67980--68091	42	2.7	42	95	0	197	46	18	17	16	1.84
77861--77901	20	2.0	20	90	0	64	39	21	14	24	1.91
78063--78107	21	2.1	21	83	4	54	17	42	20	20	1.90
79994--80092	42	2.4	42	91	0	153	27	34	19	19	1.95
80207--80256	21	2.4	21	83	6	66	20	12	34	34	1.89
80273--80369	21	4.6	21	73	7	63	21	11	32	34	1.89
80248--80429	60	3.0	60	84	5	188	22	13	31	32	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
80290--80429	60	2.3	60	91	3	217	22	12	30	34	1.92
80726--80814	21	4.3	21	74	4	65	24	34	19	21	1.96
82287--82359	29	2.5	29	90	0	110	30	21	15	32	1.94

Tables:   1

The End!