genome.fa.s1952.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001952.1 Hibiscus syriacus cultivar Beakdansim tig00003948_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53889

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
149--183	17	2.1	17	88	0	52	34	0	20	45	1.51
4173--4233	21	3.2	21	65	29	64	31	4	21	42	1.74
4167--4281	35	3.3	35	92	3	187	29	5	20	45	1.72
5205--5270	20	3.3	19	84	15	89	27	33	15	24	1.95
11001--11108	23	4.8	23	70	17	75	27	24	18	29	1.98
12661--12719	27	2.2	27	93	0	109	18	30	25	25	1.98
26129--26159	16	1.9	16	93	0	53	38	6	0	54	1.26
28022--28178	60	2.6	60	82	5	167	42	7	17	31	1.78
28791--28943	59	2.5	60	78	6	159	35	20	4	39	1.73
29056--29176	61	2.0	60	81	10	140	39	4	19	36	1.73
29734--29854	7	17.4	7	75	10	70	50	31	0	18	1.47
29699--29854	21	7.6	20	68	15	86	49	30	0	20	1.49
31552--31585	16	2.1	16	88	0	50	14	2	20	61	1.46
39166--39302	60	2.3	60	82	5	168	33	26	6	33	1.82
39433--39537	29	3.5	30	76	10	108	38	4	22	34	1.76
39453--39556	31	3.4	31	76	5	122	38	4	24	32	1.76
39410--39557	60	2.5	60	84	3	201	35	4	25	34	1.77
40110--40143	3	11.3	3	87	0	50	35	32	0	32	1.58
43374--43494	32	3.8	32	81	6	138	29	12	20	37	1.89
44452--44523	36	2.0	37	83	8	94	30	15	13	40	1.86
44352--44616	87	3.1	87	92	0	433	32	18	13	36	1.89
44549--44635	37	2.4	37	84	1	104	25	20	14	39	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44525--44760	102	2.3	102	88	1	339	29	19	12	38	1.89
44802--44901	36	2.7	37	93	3	175	30	21	15	34	1.93
44888--44957	29	2.4	29	100	0	140	40	18	4	37	1.71
44948--45064	36	3.2	36	82	7	146	27	19	12	40	1.88
45050--45139	37	2.4	37	88	0	135	40	22	7	30	1.82
46524--46569	21	2.1	23	84	8	60	23	6	2	67	1.25
51962--52126	8	22.6	7	66	22	56	34	10	2	52	1.48
52056--52122	22	3.1	22	73	2	64	32	13	0	53	1.40
52670--52706	17	2.2	18	85	9	51	40	8	0	51	1.32
52153--53644	527	2.9	515	88	7	2172	47	6	12	33	1.68

Tables:   1

The End!