genome.fa.s1953.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001953.1 Hibiscus syriacus cultivar Beakdansim tig00003953_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  86567

Tables:   1   

This is table  1  of  1  ( 95 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
775--1388	55	11.2	55	85	4	751	32	14	23	29	1.94
775--1369	219	2.7	220	87	3	810	32	14	23	29	1.94
1647--1700	3	18.7	3	90	7	85	37	0	0	62	0.95
3695--3826	20	6.5	20	76	7	97	33	22	18	25	1.97
3689--3826	61	2.3	61	81	0	168	34	21	17	26	1.95
3994--4037	22	2.0	22	90	0	70	22	45	13	18	1.84
4302--4358	20	2.8	20	86	0	69	17	17	21	43	1.88
4495--4549	25	2.2	24	78	15	58	20	9	18	52	1.71
5675--5719	18	2.5	18	88	0	72	26	44	15	13	1.83
6191--6257	20	3.4	20	81	2	73	38	23	22	14	1.92
6261--6312	25	2.1	25	96	0	95	46	21	19	13	1.84
6329--6386	14	3.9	14	79	16	71	10	17	24	48	1.78
6324--6434	32	3.4	33	90	3	163	13	18	19	47	1.82
6345--6403	18	3.5	18	70	23	56	15	18	16	49	1.80
6814--6901	41	2.1	41	85	2	122	21	43	14	20	1.88
8314--8349	14	2.6	14	90	0	54	30	0	22	47	1.52
8486--8553	19	3.8	19	85	14	101	47	17	22	13	1.82
9146--9179	12	2.9	12	86	4	52	17	41	5	35	1.74
9955--9979	12	2.1	12	100	0	50	72	0	28	0	0.86
12264--12396	19	7.8	19	66	23	98	42	19	22	15	1.88
12264--12390	33	3.8	33	88	4	202	42	19	22	14	1.88
12265--12391	66	1.9	66	98	0	245	41	20	22	14	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12244--12396	19	8.8	19	67	20	84	41	20	22	15	1.89
12405--12457	14	3.4	14	72	22	52	7	26	22	43	1.80
12419--12479	19	3.5	19	68	21	60	13	22	19	44	1.85
12401--12479	33	2.4	33	95	0	140	11	24	20	44	1.84
12585--12621	14	2.6	14	91	0	65	45	24	0	29	1.53
13977--14179	42	4.8	41	72	9	140	24	17	36	21	1.95
13977--14043	21	3.2	21	68	4	55	20	19	35	23	1.95
13977--14127	21	7.2	21	62	12	51	23	18	36	21	1.95
14007--14182	84	2.1	84	96	0	325	25	17	37	20	1.93
14401--14585	91	2.0	90	90	6	291	47	18	12	21	1.81
16266--16406	19	7.8	19	70	17	86	43	19	24	13	1.86
16291--16389	33	3.0	33	90	1	153	39	22	26	12	1.89
16361--16411	19	2.7	19	96	0	93	45	21	21	11	1.84
16407--16450	18	2.4	19	88	3	63	9	15	27	47	1.76
16981--17033	20	2.7	20	87	0	79	28	20	26	24	1.99
17042--17095	20	2.7	20	91	0	90	27	18	22	31	1.97
16982--17098	61	1.9	61	85	0	162	25	17	23	33	1.96
16982--17116	61	2.2	61	81	2	155	24	20	22	32	1.98
17166--17219	21	2.6	21	100	0	108	29	33	16	20	1.95
19569--19593	2	12.5	2	100	0	50	52	0	0	48	1.00
21467--21511	19	2.4	19	96	0	81	35	8	17	37	1.81
21580--21605	13	2.0	13	100	0	52	38	15	23	23	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33308--33348	18	2.3	18	86	0	55	48	19	31	0	1.49
35316--35539	40	5.5	40	72	9	148	33	21	19	25	1.97
35188--35535	125	2.8	125	83	1	385	33	20	18	27	1.96
35938--35970	15	2.2	15	89	10	50	27	6	6	60	1.44
35986--36083	31	2.9	33	79	14	94	46	0	4	48	1.20
36109--36144	13	2.9	12	95	4	63	41	0	0	58	0.98
38127--38268	55	2.6	55	88	0	194	42	11	24	21	1.86
38631--38655	13	1.9	13	100	0	50	28	16	8	48	1.74
43898--44671	55	14.1	55	87	1	1018	32	14	23	29	1.94
44943--44999	3	19.7	3	84	13	75	36	0	1	61	1.07
48928--48980	2	26.5	2	100	0	106	50	0	0	49	1.00
50865--50901	19	1.9	19	100	0	74	32	8	16	43	1.77
50970--50995	13	2.0	13	100	0	52	38	15	23	23	1.92
62519--62554	18	2.1	17	94	5	63	25	13	11	50	1.75
66238--66263	11	2.4	11	100	0	52	73	0	0	26	0.84
67445--67498	12	4.3	13	80	15	60	70	0	0	29	0.88
67447--67496	22	2.3	23	86	6	68	68	0	0	32	0.90
67477--67532	16	3.4	16	75	15	51	62	1	0	35	1.06
67484--67532	18	2.8	18	75	3	55	61	2	0	36	1.08
67483--67565	39	2.1	39	82	8	96	54	3	0	42	1.18
67578--67667	26	3.4	26	92	4	137	46	3	4	45	1.39
67632--67767	37	3.7	36	88	5	175	44	6	4	44	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68355--68478	33	3.8	32	84	11	153	28	10	20	41	1.85
68583--68635	17	3.1	17	70	20	56	41	13	22	22	1.88
68559--68618	19	3.3	19	68	20	56	41	10	21	26	1.85
68707--68966	36	7.4	36	83	8	338	38	13	21	26	1.91
68504--68963	174	2.6	172	88	5	665	39	12	20	27	1.89
68571--69040	138	3.5	133	76	15	437	38	12	20	27	1.90
68945--69023	21	4.0	21	71	18	80	40	11	20	27	1.87
68902--69023	57	2.1	57	92	0	199	40	13	20	26	1.89
68965--69053	36	2.4	36	90	5	135	37	13	19	30	1.90
69608--69761	55	2.8	54	80	5	168	25	15	23	35	1.94
69618--69761	53	2.7	53	82	4	164	25	15	22	36	1.93
75367--75413	3	14.7	3	91	8	67	68	0	0	31	0.90
75366--75416	14	3.3	16	81	18	72	68	0	0	31	0.90
75367--75416	10	5.1	10	88	9	68	68	0	0	32	0.90
75426--75622	40	4.7	41	74	15	129	47	4	2	45	1.35
75548--75848	37	8.3	37	77	17	269	44	4	4	46	1.44
75598--75660	26	2.5	26	94	2	110	46	6	4	42	1.50
75559--75696	63	2.2	66	88	5	203	46	6	4	42	1.49
79057--79125	31	2.2	32	97	2	131	42	11	18	27	1.85
79965--79994	12	2.6	12	94	5	53	20	23	33	23	1.97
80100--80205	45	2.4	44	92	4	169	33	3	9	53	1.51
80104--80179	23	3.3	23	67	10	75	35	5	9	50	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
80170--80222	22	2.4	21	81	9	61	24	3	13	58	1.51
80328--80377	20	2.4	21	83	6	66	12	12	4	72	1.26
80340--80383	20	2.2	20	83	0	52	13	9	4	72	1.24
82202--82256	29	1.9	29	82	10	69	20	16	25	38	1.92
82249--82367	16	7.4	16	75	3	87	10	14	26	47	1.77
82249--82363	32	3.6	32	75	8	108	11	14	26	47	1.78
85820--85848	3	9.7	3	100	0	58	34	0	0	65	0.93

Tables:   1

The End!