Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001954.1 Hibiscus syriacus cultivar Beakdansim tig00003954_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  44187

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3033--3060
13
2.2
13
100
0
56
35
17
10
35
1.85
5699--6202
126
4.0
127
90
4
806
23
23
19
33
1.97
6626--6726
34
3.0
34
78
5
123
40
3
2
52
1.35
9360--9480
60
2.0
60
82
9
149
31
28
21
19
1.97
12112--12198
2
43.5
2
100
0
174
50
0
0
49
1.00
12622--12752
30
4.4
30
91
3
212
28
11
13
46
1.78
12622--12752
59
2.2
60
91
1
219
28
11
13
46
1.78
14094--14194
30
3.4
30
91
0
157
39
15
14
29
1.88
17978--18002
11
2.3
11
100
0
50
16
0
8
76
1.02
18002--18036
2
17.5
2
100
0
70
48
0
0
51
1.00
18350--18375
4
6.5
4
100
0
52
23
0
0
76
0.78
19025--19058
16
2.1
17
94
5
61
41
0
0
58
0.98
23266--23292
3
9.0
3
100
0
54
33
0
33
33
1.58
25968--26051
29
2.8
30
89
3
134
33
13
9
44
1.76
30715--30796
29
2.8
29
90
1
128
34
13
9
42
1.77
33257--33286
15
2.0
15
93
0
51
23
0
56
20
1.42
35077--35132
27
2.1
27
93
0
94
46
17
7
28
1.75
35561--35618
21
2.8
21
94
0
98
22
0
27
50
1.50
35561--35634
7
10.6
7
74
0
58
20
1
31
47
1.59
35601--35646
14
3.3
14
93
0
74
17
4
30
47
1.67
35562--35632
21
3.4
21
88
0
79
21
1
29
47
1.59
35909--35944
16
2.2
17
90
9
58
61
16
5
16
1.53
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40536--40672
7
19.6
7
72
3
87
48
29
0
21
1.51
40536--40646
21
5.3
21
79
1
107
47
29
0
22
1.51
40547--40646
28
3.6
29
81
5
107
50
28
0
22
1.49
41325--41355
16
1.9
16
93
0
53
19
0
22
58
1.40

Tables:   1

The End!