genome.fa.s1956.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001956.1 Hibiscus syriacus cultivar Beakdansim tig00003960_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55833

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5--862	198	4.4	197	85	5	1039	37	13	16	32	1.88
2320--2355	3	12.0	3	93	0	63	33	2	30	33	1.72
3625--3676	24	2.2	25	79	10	63	30	1	15	51	1.54
3644--3680	18	2.1	18	89	0	56	32	5	10	51	1.60
3636--3688	24	2.2	24	86	0	70	35	3	13	47	1.61
3903--4659	197	3.8	198	85	6	975	39	13	15	31	1.86
5815--5858	19	2.3	19	92	0	70	31	2	13	52	1.53
8514--9029	200	2.6	197	83	6	621	38	13	14	32	1.86
16056--16101	20	2.2	21	88	3	67	43	4	6	45	1.49
16139--16170	16	2.0	16	93	0	55	28	12	15	43	1.83
16363--16418	19	2.9	19	91	2	85	37	17	7	37	1.78
19264--19318	19	2.9	19	83	0	65	36	9	16	38	1.80
19405--19477	20	3.7	19	87	5	92	36	19	8	35	1.81
20986--21026	14	3.1	14	76	16	52	26	2	4	65	1.25
27122--27197	3	26.7	3	77	15	81	63	3	0	32	1.13
27122--27207	8	10.2	8	78	13	68	62	3	1	32	1.19
27139--27200	5	12.8	5	72	24	53	62	3	0	33	1.11
27429--27689	52	5.0	51	89	4	362	29	16	25	29	1.96
27785--28188	52	7.8	52	88	1	567	28	17	24	30	1.97
28346--28525	80	2.2	79	81	5	191	28	17	17	36	1.93
28570--29012	36	12.2	36	90	2	609	23	22	16	38	1.93
28570--29012	110	4.1	108	89	2	609	23	22	16	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29145--29300	62	2.5	63	90	3	244	30	14	25	28	1.95
29828--29927	50	2.0	50	98	0	191	19	28	16	37	1.92
32829--32895	18	3.6	18	91	6	98	29	11	22	35	1.90
33465--33835	45	8.2	45	87	1	501	42	13	19	24	1.87
39099--39704	45	13.4	45	85	1	748	41	13	20	24	1.88
43992--44032	13	3.3	13	76	13	50	36	2	4	56	1.34
43995--44040	21	2.0	23	88	12	69	32	2	4	60	1.28
44658--44687	14	2.1	14	93	0	51	50	6	0	43	1.28
45015--45046	10	3.1	10	91	8	55	18	31	31	18	1.95
45813--45937	30	4.2	30	92	0	205	8	25	25	40	1.84
45892--45939	9	4.6	11	71	23	50	6	27	27	39	1.80
46794--46861	23	2.9	23	91	2	100	20	19	29	30	1.97
50339--50374	2	18.0	2	100	0	72	50	0	0	50	1.00
52209--52392	85	2.2	85	88	2	262	25	14	23	36	1.93

Tables:   1

The End!