Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001957.1 Hibiscus syriacus cultivar Beakdansim tig00003961_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  105484

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5891--5949
31
1.9
31
92
0
100
40
6
10
42
1.65
5974--6016
22
2.0
22
100
0
86
51
13
0
34
1.42
5976--6024
22
2.2
22
88
3
71
55
14
0
30
1.40
5964--6259
54
5.4
54
80
10
377
53
11
0
34
1.41
5996--6259
32
9.4
32
71
25
206
53
12
0
34
1.41
6098--6151
14
3.6
14
72
18
54
55
5
1
37
1.34
6140--6182
22
2.0
22
100
0
86
51
13
0
34
1.42
6142--6190
22
2.2
22
88
3
71
55
14
0
30
1.40
6194--6294
22
4.5
22
71
7
94
51
9
0
38
1.35
5979--6227
80
3.0
81
83
9
342
53
12
0
34
1.42
6239--6380
15
9.5
15
76
19
136
52
2
0
45
1.12
6109--6403
108
2.9
101
78
13
273
51
7
0
41
1.33
6238--6382
54
2.8
52
86
4
211
52
2
0
45
1.12
8326--8442
39
2.9
39
76
20
127
47
1
15
35
1.55
18109--18143
17
2.1
17
94
5
63
37
0
22
40
1.55
33707--33825
4
27.8
4
67
16
51
31
1
4
63
1.23
33714--33817
18
5.7
18
68
26
67
32
1
4
60
1.29
33769--33821
22
2.4
22
93
0
97
30
0
5
64
1.17
33707--33825
52
2.3
51
82
5
159
31
1
4
63
1.23
35763--35833
6
11.8
6
84
0
70
21
1
42
35
1.62
35760--35834
9
8.7
9
76
8
75
22
1
41
34
1.63
35781--35834
3
18.0
3
80
0
63
24
1
38
35
1.66
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35778--35833
24
2.3
24
93
0
94
21
1
41
35
1.64
43362--43423
31
2.0
32
90
3
99
25
11
8
54
1.63
43827--43865
4
9.8
4
94
0
51
25
7
25
41
1.82
46165--46386
111
2.0
111
92
0
372
37
8
9
43
1.69
47867--47901
18
1.9
18
100
0
70
28
25
22
22
1.99
48252--48301
9
5.6
9
82
0
64
34
10
34
22
1.87
48240--48305
21
3.1
21
82
0
78
33
13
33
19
1.91
59497--59549
21
2.5
21
96
0
97
33
32
11
22
1.90
60022--60096
20
3.5
20
73
16
78
26
1
6
65
1.25
59951--60165
45
4.7
45
90
5
317
21
3
6
67
1.29
59952--60165
91
2.4
91
88
4
326
21
3
6
67
1.30
60195--60256
20
3.1
20
75
9
72
22
1
6
69
1.20
64660--64690
2
16.0
2
93
6
55
51
0
0
48
1.00
73364--73414
23
2.2
23
96
0
93
23
13
37
25
1.92
74323--74499
88
2.0
88
100
0
354
36
27
11
24
1.90
84824--84863
21
2.1
19
86
13
55
35
5
10
50
1.58
91143--91193
16
3.0
16
74
20
50
43
1
0
54
1.11
102085--102125
14
2.9
15
82
17
52
51
0
0
48
1.00
103667--103725
16
3.6
17
84
6
77
30
13
5
50
1.63
104071--104120
25
1.9
27
84
15
70
50
2
4
44
1.32

Tables:   1

The End!