genome.fa.s1959.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001959.1 Hibiscus syriacus cultivar Beakdansim tig00003963_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54594

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1524--1560	17	2.1	17	90	5	56	70	0	27	2	1.01
1538--1620	16	5.5	15	75	18	57	79	1	14	4	0.95
1524--1572	15	3.0	16	85	8	55	71	0	24	4	1.03
1555--1620	30	2.2	30	81	10	73	81	1	12	4	0.90
1555--1611	7	7.9	7	75	14	53	82	0	14	3	0.80
9708--9738	13	2.4	13	94	0	53	45	9	0	45	1.36
15709--15762	15	3.6	15	73	9	56	18	11	27	42	1.84
15688--15798	30	3.6	30	82	10	109	20	10	27	40	1.86
17259--17345	41	2.0	41	89	10	131	51	18	11	18	1.75
22040--22131	48	1.9	48	84	4	123	20	15	15	48	1.80
22060--22131	24	3.0	24	81	0	90	19	13	16	50	1.79
23450--23475	3	8.7	3	100	0	52	34	0	0	65	0.93
26521--26675	31	5.0	31	89	3	233	36	21	20	20	1.95
26521--26675	61	2.5	62	89	4	242	36	21	20	20	1.95
26891--26937	23	2.0	24	91	4	78	34	21	0	44	1.52
27571--27615	21	2.1	21	87	0	63	15	24	28	31	1.96
30751--30906	31	5.0	31	88	1	224	37	22	19	20	1.94
31122--31168	23	2.0	24	91	4	78	34	21	0	44	1.52
31802--31846	21	2.1	21	87	0	63	15	24	28	31	1.96
33174--33246	24	3.0	24	79	0	83	20	9	15	54	1.68
34034--34139	44	2.4	45	83	1	142	30	22	16	31	1.95
34034--34152	45	2.7	44	81	1	139	31	22	15	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34201--34354	36	4.2	35	80	13	161	30	15	7	46	1.74
34201--34354	73	2.1	73	82	11	183	30	15	7	46	1.74
34769--34820	25	2.2	24	82	6	61	59	15	7	17	1.58
37897--37947	5	10.2	5	100	0	102	58	0	0	41	0.98
38825--38876	25	2.0	26	88	3	79	65	1	0	32	1.04
38812--38873	31	2.0	32	87	3	90	64	3	0	32	1.09
39852--40298	225	2.0	223	86	5	616	39	13	14	33	1.84
40160--40426	108	2.5	108	88	0	381	35	14	13	36	1.85
45332--45371	21	1.9	21	89	0	62	10	25	40	25	1.86
45353--45403	23	2.3	23	86	6	79	19	21	41	17	1.91
49206--49245	21	1.9	21	90	10	64	37	10	0	52	1.35
52596--52632	15	2.4	17	86	13	53	64	13	0	21	1.27

Tables:   1

The End!