genome.fa.s196.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000196.1 Hibiscus syriacus cultivar Beakdansim tig00000349_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  116223

Tables:   1   

This is table  1  of  1  ( 66 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3003--3059	21	2.6	22	86	8	73	54	5	7	33	1.50
3175--3224	22	2.3	22	89	0	73	48	42	6	4	1.46
3187--3224	11	3.5	11	85	0	58	50	44	5	0	1.24
5058--5451	131	3.0	130	87	0	565	34	10	17	38	1.83
6532--6635	45	2.3	45	81	4	122	34	17	20	27	1.95
6642--6699	20	2.6	22	86	10	75	29	22	22	25	1.99
7640--7747	31	3.5	31	86	3	139	19	20	25	35	1.96
7721--7792	29	2.4	30	86	2	92	16	22	27	33	1.95
10144--10168	13	1.9	13	100	0	50	24	24	8	44	1.80
10938--10964	2	13.5	2	100	0	54	48	0	0	51	1.00
11603--12018	157	2.6	158	88	3	577	30	18	6	45	1.73
12812--12868	28	2.0	28	96	0	105	29	19	17	33	1.95
13736--13785	3	16.3	3	95	4	91	66	0	0	34	0.92
16311--16410	44	2.2	44	89	1	146	41	11	21	27	1.86
22007--22110	44	2.4	44	86	0	136	45	11	18	25	1.83
23092--23128	18	2.1	18	100	0	74	48	10	10	29	1.72
26310--26352	20	2.2	20	83	8	52	27	18	18	34	1.95
26678--29459	711	3.9	707	86	2	3864	37	16	15	29	1.90
34109--34165	21	2.7	21	88	0	87	8	31	38	21	1.84
36473--36529	22	2.6	22	94	0	96	15	21	19	43	1.87
39696--39746	15	3.2	16	79	17	54	78	7	13	0	0.96
39702--39771	23	3.0	21	76	21	61	77	7	15	0	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40433--40475	22	1.9	22	85	4	59	39	23	13	23	1.90
40885--40920	18	2.0	19	89	10	58	19	5	30	44	1.73
41432--42131	106	6.5	106	93	2	1193	34	25	19	21	1.96
43737--43793	22	2.6	22	94	0	96	15	21	19	43	1.87
50818--50860	18	2.4	18	96	0	77	18	9	11	60	1.57
51016--51056	20	2.0	20	85	0	55	31	29	7	31	1.85
51102--51233	61	2.2	61	100	0	264	27	21	16	34	1.95
51214--51399	80	2.3	80	80	9	209	28	20	12	38	1.89
51302--51352	20	2.5	21	72	21	63	33	27	9	29	1.89
51304--51433	60	2.2	58	79	8	138	30	23	10	35	1.89
51194--51411	40	5.4	39	75	6	170	28	20	12	38	1.89
51323--51431	20	5.6	19	72	12	78	29	22	11	36	1.89
51196--51412	80	2.7	79	77	11	208	28	20	12	38	1.89
52196--52229	12	2.8	12	90	0	50	55	29	0	14	1.40
52349--52397	24	2.0	24	88	0	71	26	16	18	38	1.91
52355--52408	24	2.2	24	90	0	81	22	12	20	44	1.85
54677--54712	18	2.0	18	94	0	63	55	25	2	16	1.55
56471--56603	21	6.3	21	79	11	121	26	15	36	22	1.93
56912--56991	21	3.8	21	70	6	72	37	28	12	21	1.90
56911--57007	42	2.3	41	78	5	122	35	32	11	20	1.88
57188--57298	42	2.6	42	87	2	134	23	12	39	24	1.89
58797--58882	34	2.5	34	83	9	95	46	18	16	18	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58845--58882	20	1.9	20	94	0	67	47	13	18	21	1.82
58889--58957	20	3.8	20	70	21	69	15	15	21	46	1.84
59416--59455	19	2.0	20	85	4	55	42	17	7	32	1.77
67611--67663	24	2.2	24	90	3	81	35	1	1	60	1.19
69369--69442	36	2.1	36	100	0	148	24	17	29	28	1.97
78342--78406	7	10.1	7	82	15	63	86	0	13	0	0.58
78347--78406	1	60.0	1	76	0	57	88	0	11	0	0.52
78347--78400	10	5.1	10	91	8	81	88	0	11	0	0.50
78342--78407	6	11.5	6	80	19	79	84	0	15	0	0.61
79546--80062	83	6.2	83	97	0	962	27	12	23	36	1.91
80856--81415	114	4.9	113	94	2	809	38	13	19	28	1.90
81741--81801	3	20.3	3	93	0	104	36	1	0	62	1.05
81731--81810	9	7.5	11	78	18	57	40	1	0	58	1.06
92462--92498	15	2.5	15	95	0	65	8	70	16	5	1.30
95895--95943	23	2.2	23	85	3	64	65	0	14	20	1.27
97913--98624	85	8.4	85	84	2	813	27	15	19	36	1.93
97977--98627	86	7.6	86	85	2	816	27	16	19	37	1.93
100087--100288	99	2.0	99	92	1	334	31	17	16	34	1.92
101299--101343	20	2.2	20	100	0	90	11	46	17	24	1.81
104465--104510	17	2.8	17	78	15	51	60	2	8	28	1.38
107112--107195	3	28.0	3	97	0	159	1	32	0	66	0.99
116155--116220	26	2.4	27	85	9	82	42	3	4	50	1.38

Tables:   1

The End!