genome.fa.s1961.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001961.1 Hibiscus syriacus cultivar Beakdansim tig00003965_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76033

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3835--3865	15	2.1	15	93	0	53	54	12	3	29	1.53
8158--8334	88	2.0	88	98	0	345	28	12	10	48	1.74
9738--9776	20	2.0	20	84	0	51	17	23	35	23	1.95
10169--10204	17	2.1	17	100	0	72	41	5	5	47	1.50
10197--10232	17	2.1	17	89	0	54	27	8	13	50	1.71
10491--10562	23	3.1	23	87	0	99	33	12	16	37	1.86
10537--10699	75	2.2	75	87	0	236	34	15	12	38	1.85
10693--10746	23	2.3	23	87	0	81	40	12	14	31	1.84
10612--10833	121	1.8	121	80	1	266	34	13	12	38	1.83
10442--11290	196	4.3	195	86	2	1117	34	14	12	38	1.84
10882--10954	23	3.2	23	76	0	83	35	12	13	38	1.83
10731--10908	75	2.4	74	82	2	248	35	12	10	41	1.77
10805--11029	121	1.9	122	86	0	326	34	14	12	39	1.83
10929--11093	75	2.2	75	90	0	267	31	15	14	38	1.87
11079--11140	23	2.7	23	84	0	88	33	8	19	38	1.81
11125--11307	75	2.4	75	87	1	260	34	14	10	40	1.80
12154--12184	16	1.9	16	93	0	53	58	0	0	41	0.98
16121--16328	105	2.0	105	90	1	328	36	23	10	29	1.88
23351--23403	18	2.9	18	85	0	70	28	32	16	22	1.96
32074--32172	51	1.9	51	85	0	135	48	15	21	15	1.81
32806--32832	14	1.9	14	100	0	54	37	22	18	22	1.95
32845--33612	106	7.4	106	85	5	992	35	22	18	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33076--33466	104	3.9	97	83	9	430	35	22	19	22	1.96
32869--33612	305	2.4	306	85	3	972	35	22	18	23	1.96
34097--34167	35	2.1	35	97	2	135	40	11	21	26	1.87
34495--34543	2	24.5	2	100	0	98	48	0	0	51	1.00
34718--34742	2	12.5	2	100	0	50	48	0	0	52	1.00
34858--34934	41	1.9	39	86	5	109	16	23	6	53	1.66
34950--35029	40	2.0	40	86	9	112	31	5	7	56	1.49
35018--35058	2	20.5	2	100	0	82	48	0	0	51	1.00
40356--40420	21	3.1	21	79	16	73	26	27	29	16	1.97
43521--43565	19	2.4	19	96	0	81	15	11	33	40	1.83
46909--46998	45	2.0	45	100	0	180	26	15	22	35	1.94
50326--50371	20	2.3	20	88	0	74	19	21	23	34	1.96
53870--53912	16	2.6	17	88	3	61	11	16	4	67	1.38
54485--54522	15	2.4	17	86	8	53	28	13	2	55	1.51
60842--60890	3	16.7	3	95	4	91	32	0	0	67	0.91
61939--61977	2	19.5	2	100	0	78	48	0	0	51	1.00
62142--62182	20	2.1	20	82	13	50	24	2	7	65	1.30
62397--62526	28	4.5	28	72	7	84	23	13	8	55	1.65
62483--62556	28	2.5	30	82	6	89	16	9	13	60	1.57
65872--65912	20	2.0	20	95	0	73	31	19	12	36	1.89
66984--67030	20	2.3	20	92	0	85	34	10	23	31	1.89
67964--68090	21	5.8	22	78	10	116	18	18	23	39	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67978--68054	23	3.4	23	89	3	95	16	19	24	38	1.92
69681--69732	14	3.8	13	78	12	52	73	0	7	19	1.07
74301--74340	20	2.1	19	90	4	62	40	20	15	25	1.90

Tables:   1

The End!