Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01001964.1 Hibiscus syriacus cultivar Beakdansim tig00003968_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119397
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Found at i:1149 original size:21 final size:21
Alignment explanation
Indices: 1116--1155 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
1106 CCGTTAAATA
1116 ACAAAAATAAAATAATTTATT
1 ACAAAAATAAAATAATTTATT
* *
1137 ACAAGAATTAAATAATTTA
1 ACAAAAATAAAATAATTTA
1156 GAAAATAAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.60, C:0.05, G:0.03, T:0.33
Consensus pattern (21 bp):
ACAAAAATAAAATAATTTATT
Found at i:1805 original size:2 final size:2
Alignment explanation
Indices: 1798--1822 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
1788 CTCCAAATTA
1798 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
1823 AGTAAAAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:8410 original size:31 final size:31
Alignment explanation
Indices: 8375--8476 Score: 186
Period size: 31 Copynumber: 3.3 Consensus size: 31
8365 CTGAATAACC
*
8375 TAGGTAATCAGTCCATATGTCCCGAAGAACA
1 TAGGTAAACAGTCCATATGTCCCGAAGAACA
8406 TAGGTAAACAGTCCATATGTCCCGAAGAACA
1 TAGGTAAACAGTCCATATGTCCCGAAGAACA
*
8437 TAAGTAAACAGTCCATATGTCCCGAAGAACA
1 TAGGTAAACAGTCCATATGTCCCGAAGAACA
8468 TAGGTAAAC
1 TAGGTAAAC
8477 CCTCGACCCT
Statistics
Matches: 68, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 68 1.00
ACGTcount: A:0.39, C:0.22, G:0.19, T:0.21
Consensus pattern (31 bp):
TAGGTAAACAGTCCATATGTCCCGAAGAACA
Found at i:12593 original size:21 final size:21
Alignment explanation
Indices: 12567--12617 Score: 102
Period size: 21 Copynumber: 2.4 Consensus size: 21
12557 TTTGGTCAAA
12567 GCCGGGCAGAAATAAACCCGT
1 GCCGGGCAGAAATAAACCCGT
12588 GCCGGGCAGAAATAAACCCGT
1 GCCGGGCAGAAATAAACCCGT
12609 GCCGGGCAG
1 GCCGGGCAG
12618 CGTACCCGGT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.29, C:0.29, G:0.33, T:0.08
Consensus pattern (21 bp):
GCCGGGCAGAAATAAACCCGT
Found at i:12734 original size:3 final size:3
Alignment explanation
Indices: 12726--12754 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
12716 GCAGCTGTGC
12726 AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
12755 TGGGGAGTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:13974 original size:197 final size:197
Alignment explanation
Indices: 13448--13996 Score: 463
Period size: 197 Copynumber: 2.8 Consensus size: 197
13438 GCAAGTATTT
* * * *
13448 ATAGACATGTTCGA-GGGGTA-TTTTCGAGAAGTTAATATGAAA-ATTTTCATAATTTATAAGAT
1 ATAGACATATTCGAGGGGGTATTTTTAG-GTAGTT-ATAT-AAATTTTTTCATAATTTATAAGAT
* * * * * * * * * * * * *
13510 TAGAGGCGTAATATTGGAACTTATCTTTCTATTGATGCCAATAACGAGACATA-CGGTTTATTGT
63 TAGAGACATAGTATTAGAACTTATCTTTCAATAGAGGCCAATACCGACACAAACCAG-ATATTAT
* * * * * *
13574 AAGTGGTGTAAGAAT-TACGTTGAAAATGGTTCCAAATCTTGTTTTGTGCATGAAGAAGCTAAAA
127 AAGCGGTGTAA-AATCTGCATTGAAAATGATTCCAAAGCTTGTTTTGTGCATGAAGAAACTAAAA
*
13638 TGGCTTG
191 TGACTTG
* * * *
13645 ATATACATGTTCGAGGGGGTATTTTTAGGTAGTTATTCTAAATTTTTTCGTAATTTATAAGATTA
1 ATAGACATATTCGAGGGGGTATTTTTAGGTAGTTA-TATAAATTTTTTCATAATTTATAAGATTA
* * * * * ** *
13710 GAGACATAGTATTGGAACTTATCTTTTAATTGAGGCCAATATCGACACATATGAGATATTGTAAG
65 GAGACATAGTATTAGAACTTATCTTTCAATAGAGGCCAATACCGACACAAACCAGATATTATAAG
13775 CGG-GTAAAAATCT-CATTGAAAATGATTCCAAAGCTTGGTTTTGTGCATGAAGAAAAAACTAAA
130 CGGTGT-AAAATCTGCATTGAAAATGATTCCAAAGCTT-GTTTTGTGCATGAAG---AAACTAAA
13838 ATGACTTG
190 ATGACTTG
* * * * * *
13846 ATAGGCATATTCGA-TGGTTATTTTT-GGATAGTTA-AT-ATTTTTTTTATAATTTATATGATTA
1 ATAGACATATTCGAGGGGGTATTTTTAGG-TAGTTATATAAATTTTTTCATAATTTATAAGATTA
* * * * * * *
13907 GTGGCGTAGTATTAGAACTTATCTTTCAATAGAGGCTAATACCGGCATAAACCAGATGTTATAAG
65 GAGACATAGTATTAGAACTTATCTTTCAATAGAGGCCAATACCGACACAAACCAGATATTATAAG
*
13972 CGGTGTAAAATTTGCATTGAAAATG
130 CGGTGTAAAATCTGCATTGAAAATG
13997 GTTTGAAACC
Statistics
Matches: 289, Mismatches: 49, Indels: 27
0.79 0.13 0.07
Matches are distributed among these distances:
197 122 0.42
198 119 0.41
199 8 0.03
200 15 0.05
201 25 0.09
ACGTcount: A:0.34, C:0.10, G:0.20, T:0.36
Consensus pattern (197 bp):
ATAGACATATTCGAGGGGGTATTTTTAGGTAGTTATATAAATTTTTTCATAATTTATAAGATTAG
AGACATAGTATTAGAACTTATCTTTCAATAGAGGCCAATACCGACACAAACCAGATATTATAAGC
GGTGTAAAATCTGCATTGAAAATGATTCCAAAGCTTGTTTTGTGCATGAAGAAACTAAAATGACT
TG
Found at i:15686 original size:80 final size:80
Alignment explanation
Indices: 15540--15785 Score: 307
Period size: 80 Copynumber: 3.1 Consensus size: 80
15530 GCTATGATGA
* * * * *
15540 TCGATACTTTAACTTTTGAAAACGTCAATGAATAAAAGATC-ACTAGTTAAGTTTAAATACCGAT
1 TCGATACTTTAAATTTTGAAAACGTCAATGAATATAAGATCGA-TAGTTAATTTTAAATATCAAT
*
15604 ACTTAATTTATAAGAT
65 ACTTAATCTATAAGAT
* * ** *
15620 TTGATATTTTAAATTTTGAAAAATTCAATGAAGATAAGATCGATAGTTAATTTTAAATATCAATA
1 TCGATACTTTAAATTTTGAAAACGTCAATGAATATAAGATCGATAGTTAATTTTAAATATCAATA
*
15685 CTTAATCTATAAGGT
66 CTTAATCTATAAGAT
* * *
15700 TCAATACTTTAGAA-TTTGAAAACGTCAATGAATATAAGATTGATAGTTTATTTTAAATATCAAT
1 TCGATACTTTA-AATTTTGAAAACGTCAATGAATATAAGATCGATAGTTAATTTTAAATATCAAT
* *
15764 ACTTAATCTATGAGGT
65 ACTTAATCTATAAGAT
15780 TCGATA
1 TCGATA
15786 TGAAGTATTA
Statistics
Matches: 142, Mismatches: 22, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
80 139 0.98
81 3 0.02
ACGTcount: A:0.41, C:0.09, G:0.12, T:0.38
Consensus pattern (80 bp):
TCGATACTTTAAATTTTGAAAACGTCAATGAATATAAGATCGATAGTTAATTTTAAATATCAATA
CTTAATCTATAAGAT
Found at i:16072 original size:35 final size:36
Alignment explanation
Indices: 15987--16072 Score: 97
Period size: 35 Copynumber: 2.4 Consensus size: 36
15977 AACATGTATA
* *
15987 ATGGAATAAGAAG-GTTCTCGAGAAGGCCAGATTTG
1 ATGGAAGAAGAAGTTTTCTCGAGAAGGCCAGATTTG
* * *
16022 ATGGAACG-AGAAGTTTTCT-GAGAATGCTAGGTTTG
1 ATGGAA-GAAGAAGTTTTCTCGAGAAGGCCAGATTTG
16057 ATGGAAGAAGAAGTTT
1 ATGGAAGAAGAAGTTT
16073 CACGATACCA
Statistics
Matches: 43, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
34 1 0.02
35 38 0.88
36 4 0.09
ACGTcount: A:0.34, C:0.08, G:0.31, T:0.27
Consensus pattern (36 bp):
ATGGAAGAAGAAGTTTTCTCGAGAAGGCCAGATTTG
Found at i:21239 original size:35 final size:37
Alignment explanation
Indices: 21172--21243 Score: 112
Period size: 35 Copynumber: 2.0 Consensus size: 37
21162 CTTTTTCGTC
21172 CTACTAGGATTCAAACTCTCAAAAATAAGATAGAATT
1 CTACTAGGATTCAAACTCTCAAAAATAAGATAGAATT
* *
21209 CTACTAGGATTC-AACTCT-TAAAATAGGATAGAATT
1 CTACTAGGATTCAAACTCTCAAAAATAAGATAGAATT
21244 TTGCTATGTT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
35 15 0.45
36 6 0.18
37 12 0.36
ACGTcount: A:0.43, C:0.15, G:0.12, T:0.29
Consensus pattern (37 bp):
CTACTAGGATTCAAACTCTCAAAAATAAGATAGAATT
Found at i:21665 original size:2 final size:2
Alignment explanation
Indices: 21658--21691 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
21648 ATCGTATTAT
21658 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
21692 ATTATTTTTA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:21753 original size:27 final size:25
Alignment explanation
Indices: 21736--21785 Score: 61
Period size: 25 Copynumber: 2.1 Consensus size: 25
21726 AAAGTTATTA
21736 TATATATA-TATATATTTATAACTAT
1 TATATATATTAT-TATTTATAACTAT
*
21761 TATATTTATTATTATTT-T-ACTAT
1 TATATATATTATTATTTATAACTAT
21784 TA
1 TA
21786 ACGTATATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
23 7 0.30
24 1 0.04
25 12 0.52
26 3 0.13
ACGTcount: A:0.38, C:0.04, G:0.00, T:0.58
Consensus pattern (25 bp):
TATATATATTATTATTTATAACTAT
Found at i:21970 original size:16 final size:16
Alignment explanation
Indices: 21949--21982 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
21939 CATGTATTTA
21949 TATTATATTACATTAT
1 TATTATATTACATTAT
* *
21965 TATTATTTTACTTTAT
1 TATTATATTACATTAT
21981 TA
1 TA
21983 AATTATTTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.32, C:0.06, G:0.00, T:0.62
Consensus pattern (16 bp):
TATTATATTACATTAT
Found at i:25324 original size:22 final size:23
Alignment explanation
Indices: 25301--25355 Score: 78
Period size: 23 Copynumber: 2.4 Consensus size: 23
25291 CAAAAAGGGC
25301 AAAAAGAAAAAAGAA-AAGAAGCA
1 AAAAAGAAAAAA-AACAAGAAGCA
25324 AAAAAGGAAAAAAAACAAGAA-CA
1 AAAAA-GAAAAAAAACAAGAAGCA
25347 AAAAAGAAA
1 AAAAAGAAA
25356 GAACAAAAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
22 4 0.13
23 14 0.47
24 12 0.40
ACGTcount: A:0.80, C:0.05, G:0.15, T:0.00
Consensus pattern (23 bp):
AAAAAGAAAAAAAACAAGAAGCA
Found at i:25338 original size:12 final size:11
Alignment explanation
Indices: 25301--25371 Score: 54
Period size: 12 Copynumber: 6.1 Consensus size: 11
25291 CAAAAAGGGC
25301 AAAAAGAAAAA
1 AAAAAGAAAAA
*
25312 AGAAAAGAAGCAA
1 A-AAAAGAA-AAA
*
25325 AAAAGGAAAAA
1 AAAAAGAAAAA
*
25336 AAACAAG-AACA
1 AAA-AAGAAAAA
25347 AAAAAGAAAGAA
1 AAAAAGAAA-AA
*
25359 CAAAAATAAAAA
1 -AAAAAGAAAAA
25371 A
1 A
25372 GGGAACAAAA
Statistics
Matches: 47, Mismatches: 7, Indels: 12
0.71 0.11 0.18
Matches are distributed among these distances:
10 3 0.06
11 15 0.32
12 18 0.38
13 11 0.23
ACGTcount: A:0.80, C:0.06, G:0.13, T:0.01
Consensus pattern (11 bp):
AAAAAGAAAAA
Found at i:25351 original size:14 final size:14
Alignment explanation
Indices: 25307--25364 Score: 54
Period size: 14 Copynumber: 4.4 Consensus size: 14
25297 GGGCAAAAAG
25307 AAAAAAGAAAAGAAGC
1 AAAAAAG-AAAGAA-C
25323 AAAAAAG---GAA-
1 AAAAAAGAAAGAAC
*
25333 AAAAAA-CAAGAAC
1 AAAAAAGAAAGAAC
25346 AAAAAAGAAAGAAC
1 AAAAAAGAAAGAAC
25360 AAAAA
1 AAAAA
25365 TAAAAAAGGG
Statistics
Matches: 36, Mismatches: 1, Indels: 12
0.73 0.02 0.24
Matches are distributed among these distances:
10 6 0.17
12 6 0.17
13 6 0.17
14 11 0.31
16 7 0.19
ACGTcount: A:0.79, C:0.07, G:0.14, T:0.00
Consensus pattern (14 bp):
AAAAAAGAAAGAAC
Found at i:26010 original size:22 final size:22
Alignment explanation
Indices: 25983--26031 Score: 80
Period size: 22 Copynumber: 2.2 Consensus size: 22
25973 CCATCAATCT
*
25983 TTTGAGCATTAAATACCAAACC
1 TTTGAGCATCAAATACCAAACC
*
26005 TTTGAGCATCAAATGCCAAACC
1 TTTGAGCATCAAATACCAAACC
26027 TTTGA
1 TTTGA
26032 CCAAACACAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.37, C:0.22, G:0.12, T:0.29
Consensus pattern (22 bp):
TTTGAGCATCAAATACCAAACC
Found at i:26939 original size:36 final size:37
Alignment explanation
Indices: 26892--26996 Score: 167
Period size: 36 Copynumber: 2.9 Consensus size: 37
26882 GTGCTCACCA
26892 TTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAA-CT
1 TTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAATCT
*
26928 TTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAATTT
1 TTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAATCT
* * *
26965 TTTTCTCCCTTGAGACAGTTTCTCTTGAAACA
1 TTGTCTCTCTTGAGACAGTTTCCCTTGAAACA
26997 TAAACATTGA
Statistics
Matches: 64, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
36 34 0.53
37 30 0.47
ACGTcount: A:0.24, C:0.24, G:0.13, T:0.39
Consensus pattern (37 bp):
TTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAATCT
Found at i:27086 original size:102 final size:102
Alignment explanation
Indices: 26910--27367 Score: 781
Period size: 102 Copynumber: 4.5 Consensus size: 102
26900 CTTGAGACAG
** * * * *
26910 TTTCCCTTGAAACAAACTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAATTTTTTTCTCCCT
1 TTTCCCTTGAAATGAATTTTGTCTCTCTTGAGATAGTTTCCCTTGAAACAAAATTTTGTCTCCCT
26975 TGAGACAGTTTCTCTTGAAACATAAACATTGAAAACA
66 TGAGACAGTTTCTCTTGAAACATAAACATTGAAAACA
* ** * *
27012 TTTCCCTTGAAATGAGTTTTGTCTCTCTTGAGATAGTTTCCCTTGAAACAAAATTCCGTCACCAT
1 TTTCCCTTGAAATGAATTTTGTCTCTCTTGAGATAGTTTCCCTTGAAACAAAATTTTGTCTCCCT
*
27077 TGAGACAGTTTCTCTTGAAACATAAACATTGGAAACA
66 TGAGACAGTTTCTCTTGAAACATAAACATTGAAAACA
*
27114 TTTCCCTTGAAATTAATTTTGTCTCTCTTGAGATAGTTTCCCTTGAAACAAAATTTTGTCTCCCT
1 TTTCCCTTGAAATGAATTTTGTCTCTCTTGAGATAGTTTCCCTTGAAACAAAATTTTGTCTCCCT
27179 TGAGACAGTTTCTCTTGAAACATAAACATTGAAAACA
66 TGAGACAGTTTCTCTTGAAACATAAACATTGAAAACA
27216 TTTCCCTTGAAATGAATTTTGTCTCTCTTGAGATAGTTTCCCTTGAAACAAAATTTTGTCTCCCT
1 TTTCCCTTGAAATGAATTTTGTCTCTCTTGAGATAGTTTCCCTTGAAACAAAATTTTGTCTCCCT
27281 TGAGACAGTTTCTCTTGAAACATAAACATTGAAAACA
66 TGAGACAGTTTCTCTTGAAACATAAACATTGAAAACA
* *
27318 TTTCCCTTGAAATGAATTTCGTCTCTCTTGAGATAGTTTCTCTTGAAACA
1 TTTCCCTTGAAATGAATTTTGTCTCTCTTGAGATAGTTTCCCTTGAAACA
27368 TAAACATTGA
Statistics
Matches: 334, Mismatches: 22, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
102 334 1.00
ACGTcount: A:0.30, C:0.21, G:0.13, T:0.37
Consensus pattern (102 bp):
TTTCCCTTGAAATGAATTTTGTCTCTCTTGAGATAGTTTCCCTTGAAACAAAATTTTGTCTCCCT
TGAGACAGTTTCTCTTGAAACATAAACATTGAAAACA
Found at i:27181 original size:37 final size:37
Alignment explanation
Indices: 27114--27200 Score: 122
Period size: 37 Copynumber: 2.4 Consensus size: 37
27104 ATTGGAAACA
** * *
27114 TTTCCCTTGAAA-TTAATTTTGTCTCTCTTGAGATAG
1 TTTCCCTTGAAACAAAATTTTGTCTCCCTTGAGACAG
27150 TTTCCCTTGAAACAAAATTTTGTCTCCCTTGAGACAG
1 TTTCCCTTGAAACAAAATTTTGTCTCCCTTGAGACAG
*
27187 TTTCTCTTGAAACA
1 TTTCCCTTGAAACA
27201 TAAACATTGA
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
36 12 0.27
37 33 0.73
ACGTcount: A:0.25, C:0.21, G:0.13, T:0.41
Consensus pattern (37 bp):
TTTCCCTTGAAACAAAATTTTGTCTCCCTTGAGACAG
Found at i:27283 original size:37 final size:37
Alignment explanation
Indices: 27216--27302 Score: 122
Period size: 37 Copynumber: 2.4 Consensus size: 37
27206 ATTGAAAACA
** * *
27216 TTTCCCTTGAAA-TGAATTTTGTCTCTCTTGAGATAG
1 TTTCCCTTGAAACAAAATTTTGTCTCCCTTGAGACAG
27252 TTTCCCTTGAAACAAAATTTTGTCTCCCTTGAGACAG
1 TTTCCCTTGAAACAAAATTTTGTCTCCCTTGAGACAG
*
27289 TTTCTCTTGAAACA
1 TTTCCCTTGAAACA
27303 TAAACATTGA
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
36 12 0.27
37 33 0.73
ACGTcount: A:0.25, C:0.21, G:0.14, T:0.40
Consensus pattern (37 bp):
TTTCCCTTGAAACAAAATTTTGTCTCCCTTGAGACAG
Found at i:27413 original size:63 final size:64
Alignment explanation
Indices: 27252--27430 Score: 288
Period size: 63 Copynumber: 2.8 Consensus size: 64
27242 CTTGAGATAG
** * *
27252 TTTCCCTTGAAACAAAATTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACATAAACATTGAAAAC
1 TTTCCCTTGAAA-TGAATTTCGTCTCTCTTGAGACAGTTTCTCTTGAAACATAAACATTG-AAAC
27317 A
64 A
*
27318 TTTCCCTTGAAATGAATTTCGTCTCTCTTGAGATAGTTTCTCTTGAAACATAAACATTG-AACA
1 TTTCCCTTGAAATGAATTTCGTCTCTCTTGAGACAGTTTCTCTTGAAACATAAACATTGAAACA
27381 TTTCCCTTGAAATGAATTTCGTCTCTCTTGAGACAGTTTCTCTTGAAACA
1 TTTCCCTTGAAATGAATTTCGTCTCTCTTGAGACAGTTTCTCTTGAAACA
27431 AAATTTTGTC
Statistics
Matches: 107, Mismatches: 6, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
63 53 0.50
65 42 0.39
66 12 0.11
ACGTcount: A:0.30, C:0.21, G:0.12, T:0.37
Consensus pattern (64 bp):
TTTCCCTTGAAATGAATTTCGTCTCTCTTGAGACAGTTTCTCTTGAAACATAAACATTGAAACA
Found at i:27428 original size:165 final size:168
Alignment explanation
Indices: 27150--27465 Score: 530
Period size: 165 Copynumber: 1.9 Consensus size: 168
27140 CTTGAGATAG
*
27150 TTTCCCTTGAAACAAAATTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACATAAACATTGAAAAC
1 TTTCCCTTGAAACAAAATTTCGTCTCCCTTGAGACAGTTTCTCTTGAAACATAAACATTG-AAAC
* *
27215 ATTTCCCTTGAAATGAATTTTGTCTCTCTTGAGATAGTTTCCCTTGAAACAAAATTTTGTCTCCC
65 ATTTCCCTTGAAATGAATTTCGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAATTTTGTCTCCC
27280 TTGAGACAG-TTTCTCTTGAAACATAAACATTGAAAACA
130 TTGAGACAGTTTTCTCTTGAAACATAAACATTGAAAACA
** * *
27318 TTTCCCTTGAAA-TGAATTTCGTCTCTCTTGAGATAGTTTCTCTTGAAACATAAACATTG-AACA
1 TTTCCCTTGAAACAAAATTTCGTCTCCCTTGAGACAGTTTCTCTTGAAACATAAACATTGAAACA
*
27381 TTTCCCTTGAAATGAATTTCGTCTCTCTTGAGACAGTTTCTCTTGAAACAAAATTTTGTCTCCCT
66 TTTCCCTTGAAATGAATTTCGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAATTTTGTCTCCCT
27446 TGAGACAGTTTTCTCTTGAA
131 TGAGACAGTTTTCTCTTGAA
27466 GCATCATCTT
Statistics
Matches: 139, Mismatches: 8, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
165 74 0.53
166 11 0.08
167 42 0.30
168 12 0.09
ACGTcount: A:0.29, C:0.20, G:0.13, T:0.38
Consensus pattern (168 bp):
TTTCCCTTGAAACAAAATTTCGTCTCCCTTGAGACAGTTTCTCTTGAAACATAAACATTGAAACA
TTTCCCTTGAAATGAATTTCGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAATTTTGTCTCCCT
TGAGACAGTTTTCTCTTGAAACATAAACATTGAAAACA
Found at i:27608 original size:37 final size:37
Alignment explanation
Indices: 27538--27609 Score: 90
Period size: 37 Copynumber: 1.9 Consensus size: 37
27528 TGGAACTAAG
* * **
27538 TTTTATCTCTCTTGAGACAGTTTTTCTTAAAACAAAA
1 TTTTATCTCCCTTAAGACAGTTTCCCTTAAAACAAAA
* *
27575 TTTTATCTCCCTTAAGACCGTTTCCCTTGAAACAA
1 TTTTATCTCCCTTAAGACAGTTTCCCTTAAAACAA
27610 CAAATATCTT
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
37 29 1.00
ACGTcount: A:0.29, C:0.22, G:0.08, T:0.40
Consensus pattern (37 bp):
TTTTATCTCCCTTAAGACAGTTTCCCTTAAAACAAAA
Found at i:28209 original size:98 final size:98
Alignment explanation
Indices: 27960--28930 Score: 804
Period size: 98 Copynumber: 9.4 Consensus size: 98
27950 TAGCTAGAGT
* *
27960 CAATTTCGACTTCACAGAGAAGGATATTGGACTCGAGACAACACAAGTTCAACTTCACAACGAAG
1 CAATTTCAACTTCACAGCGAAGGATATTGGACTCGAGACAACACAAGTTCAACTTCACAACGAAG
*
28025 GGACGGCTGGTTGTCAACAATAATTTCCCAGTTTCAGG-GC
66 GGACGGCTGGTTGTCAAC-A-AA-----CAATTTC-GGAGC
* * * * * * * *
28065 CAATTTTAACTTCATAGTGAAGGATATTGGACCCAAGACAGCACAAGCTCAACTTCACAGCGAAG
1 CAATTTCAACTTCACAGCGAAGGATATTGGACTCGAGACAACACAAGTTCAACTTCACAACGAAG
* ** *
28130 GGGCGGCTGACTGTCGACAAACAATTTCGGAGC
66 GGACGGCTGGTTGTCAACAAACAATTTCGGAGC
* *
28163 CAATCTCAACTTCACAGCGAAGGATATTGAACTCGAGACAACACAAGTTCAACTTCACAACGAAG
1 CAATTTCAACTTCACAGCGAAGGATATTGGACTCGAGACAACACAAGTTCAACTTCACAACGAAG
*
28228 GGACGGCTGGTTGTCAACAATAATTTCCTAGTTTCAGG-GC
66 GGACGGCTGGTTGTCAAC-A-AA----C-AATTTC-GGAGC
* * * * * *
28268 CAATTTTAACTTCACAGCGAAGGATATTGGACCCAAGACAGCACAAGCTCAACTTCACAGCGAAG
1 CAATTTCAACTTCACAGCGAAGGATATTGGACTCGAGACAACACAAGTTCAACTTCACAACGAAG
* ** * *
28333 GGGCGGCTGACTGTCGACAAGCAATTTCGGAGC
66 GGACGGCTGGTTGTCAACAAACAATTTCGGAGC
* *
28366 CAATCTCAACTTCACAGCGAAGGATATTGGACTCGAGACAACACAAGTTCAACTTCACAGCGAAG
1 CAATTTCAACTTCACAGCGAAGGATATTGGACTCGAGACAACACAAGTTCAACTTCACAACGAAG
*
28431 GGACGGCTGGTTGTCAACAAACAATTTCCCAATTCCAGAGC
66 GGACGGCTGGTTGTCAACAAACAA--T-----TT-CGGAGC
* * *
28472 CAATTTCAACTCCAC-GAC-AGAGGATATCGTGCTACCCGAGACAACACAAGTTCAACTTCACAA
1 CAATTTCAACTTCACAG-CGA-AGGATAT--TG-GACTCGAGACAACACAAGTTCAACTTCACAA
* * *
28535 CGAAGGGACGGCTGGTTGTCAACGAACAACTTTTCAGTTTCATCC
61 CGAAGGGACGGCTGGTTGTCAACAAACAA--TTTC-G---GA-GC
* * * * *
28580 GCGATTTTAACTCCAC-GACGGAGGATATCGTGCCACTCGAGACAACACAAGTTCAACTTCACAA
1 -CAATTTCAACTTCACAG-CGAAGGATAT--TG-GACTCGAGACAACACAAGTTCAACTTCACAA
*
28644 CGAAGGGACGGCTGGTTGTCAACAAACATTTTTCAAATTTCAGAGC
61 CGAAGGGACGGCTGGTTGTCAAC-AA-A-----C-AATTTCGGAGC
*
28690 CAATTTCAACTTCGCAGCGAAGGATATTGGACTCGAGACAACACAAGTTCAACTTCACAACGAAG
1 CAATTTCAACTTCACAGCGAAGGATATTGGACTCGAGACAACACAAGTTCAACTTCACAACGAAG
* * *
28755 GGACGGCTGATTGTCAAC-AA-GATTTCGTTCAGAGT
66 GGACGGCTGGTTGTCAACAAACAATTTCG----GAGC
* * * * * *
28790 CAATTTCATCTTCACAACGAAGGATATTAGACTCGAGACAGCACAAGCTCAACTTCACAGCGAAG
1 CAATTTCAACTTCACAGCGAAGGATATTGGACTCGAGACAACACAAGTTCAACTTCACAACGAAG
* ** * *
28855 GGGCGGCTGACTGTCAACAAATAATTTCCCAGTTCCAGAAC
66 GGACGGCTGGTTGTCAACAAACAATTT--C-G-----GAGC
*
28896 CAATTTCAACTTCACAGCGGAGGATATTGGACTCG
1 CAATTTCAACTTCACAGCGAAGGATATTGGACTCG
28931 GAACAATATT
Statistics
Matches: 716, Mismatches: 101, Indels: 97
0.78 0.11 0.11
Matches are distributed among these distances:
96 5 0.01
97 4 0.01
98 162 0.23
99 2 0.00
100 80 0.11
101 2 0.00
102 4 0.01
103 5 0.01
104 7 0.01
105 153 0.21
106 116 0.16
107 3 0.00
108 3 0.00
109 158 0.22
110 3 0.00
111 2 0.00
115 4 0.01
116 1 0.00
117 2 0.00
ACGTcount: A:0.33, C:0.25, G:0.21, T:0.22
Consensus pattern (98 bp):
CAATTTCAACTTCACAGCGAAGGATATTGGACTCGAGACAACACAAGTTCAACTTCACAACGAAG
GGACGGCTGGTTGTCAACAAACAATTTCGGAGC
Found at i:28317 original size:203 final size:204
Alignment explanation
Indices: 27968--28927 Score: 1101
Period size: 203 Copynumber: 4.6 Consensus size: 204
27958 GTCAATTTCG
* *
27968 ACTTCACAGAGAAGGATATTGGACTCGAGACAACACAAGTTCAACTTCACAACGAAGGGACGGCT
1 ACTTCACAGCGAAGGATATTGAACTCGAGACAACACAAGTTCAACTTCACAACGAAGGGACGGCT
* * * *
28033 GGTTGTCAACAATAATTTCCCAGTTTCAGGGCCAATTTTAACTTCATAGTGAAGGATATTGGACC
66 GGTTGTCAACAATAATTTCCCAGTTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACC
* * * *
28098 CAAGACAGCACAAGCTCAACTTCACAGCGAAGGGGCGGCTGACTGTCGACAAACAATTTCG-GAG
131 CAAGACAACACAAGCTCAACTTCACAACGAAGGGACGGCTGACTGTCAACAAACAATTTCGTGAG
28162 CCAATCTCA
196 CCAATCTCA
28171 ACTTCACAGCGAAGGATATTGAACTCGAGACAACACAAGTTCAACTTCACAACGAAGGGACGGCT
1 ACTTCACAGCGAAGGATATTGAACTCGAGACAACACAAGTTCAACTTCACAACGAAGGGACGGCT
* * *
28236 GGTTGTCAACAATAATTTCCTAGTTTCAGGGCCAATTTTAACTTCACAGCGAAGGATATTGGACC
66 GGTTGTCAACAATAATTTCCCAGTTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACC
* * * * *
28301 CAAGACAGCACAAGCTCAACTTCACAGCGAAGGGGCGGCTGACTGTCGACAAGCAATTTCG-GAG
131 CAAGACAACACAAGCTCAACTTCACAACGAAGGGACGGCTGACTGTCAACAAACAATTTCGTGAG
28365 CCAATCTCA
196 CCAATCTCA
* *
28374 ACTTCACAGCGAAGGATATTGGACTCGAGACAACACAAGTTCAACTTCACAGCGAAGGGACGGCT
1 ACTTCACAGCGAAGGATATTGAACTCGAGACAACACAAGTTCAACTTCACAACGAAGGGACGGCT
* * * *
28439 GGTTGTCAACAAACAATTTCCCAATTCCAGAGCCAATTTCAACTCCAC-GAC-AGAGGATATCGT
66 GGTTGTCAAC-AATAATTTCCCAGTTTCAGAGCCAATTTCAACTTCACAG-CGA-AGGATAT--T
* * * ** *
28502 GCTACCCGAGACAACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACGAACAACTT
126 G-GACCCAAGACAACACAAGCTCAACTTCACAACGAAGGGACGGCTGACTGTCAACAAACAA--T
* * * * *
28567 TTCAGTTTCATCCGCGATTTTA
188 TTC-G--TGA-GC-CAATCTCA
* * *
28589 ACTCCAC-GACGGAGGATATCGTGCCACTCGAGACAACACAAGTTCAACTTCACAACGAAGGGAC
1 ACTTCACAG-CGAAGGATAT--TG-AACTCGAGACAACACAAGTTCAACTTCACAACGAAGGGAC
* * * *
28653 GGCTGGTTGTCAACAA-ACATTTTTCAAATTTCAGAGCCAATTTCAACTTCGCAGCGAAGGATAT
62 GGCTGGTTGTCAACAATA-A-TTTCCCAGTTTCAGAGCCAATTTCAACTTCACAGCGAAGGATAT
* * * * *
28717 TGGACTCGAGACAACACAAGTTCAACTTCACAACGAAGGGACGGCTGATTGTCAAC-AA-GATTT
125 TGGACCCAAGACAACACAAGCTCAACTTCACAACGAAGGGACGGCTGACTGTCAACAAACAATTT
* *
28780 CGTTCAGAGTCAATTTCA
190 CG-T--GAGCCAATCTCA
* * * * * *
28798 TCTTCACAACGAAGGATATT-AGACTCGAGACAGCACAAGCTCAACTTCACAGCGAAGGGGCGGC
1 ACTTCACAGCGAAGGATATTGA-ACTCGAGACAACACAAGTTCAACTTCACAACGAAGGGACGGC
** * * *
28862 TGACTGTCAACAAATAATTTCCCAGTTCCAGAACCAATTTCAACTTCACAGCGGAGGATATTGGA
65 TGGTTGTCAAC-AATAATTTCCCAGTTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGA
28927 C
129 C
28928 TCGGAACAAT
Statistics
Matches: 662, Mismatches: 67, Indels: 53
0.85 0.09 0.07
Matches are distributed among these distances:
203 272 0.41
204 38 0.06
206 91 0.14
207 53 0.08
208 1 0.00
209 26 0.04
210 2 0.00
211 5 0.01
213 2 0.00
214 4 0.01
215 71 0.11
216 3 0.00
217 5 0.01
218 87 0.13
219 2 0.00
ACGTcount: A:0.33, C:0.25, G:0.21, T:0.21
Consensus pattern (204 bp):
ACTTCACAGCGAAGGATATTGAACTCGAGACAACACAAGTTCAACTTCACAACGAAGGGACGGCT
GGTTGTCAACAATAATTTCCCAGTTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACC
CAAGACAACACAAGCTCAACTTCACAACGAAGGGACGGCTGACTGTCAACAAACAATTTCGTGAG
CCAATCTCA
Found at i:28542 original size:109 final size:104
Alignment explanation
Indices: 27955--28930 Score: 826
Period size: 109 Copynumber: 9.4 Consensus size: 104
27945 GGTTTTAGCT
* * *
27955 AGAGTCAATTTCGACTTCACAGA-GAAGGATATTGGACTCGAGACAACACAAGTTCAACTTCACA
1 AGAGCCAATTTCAACTCCAC-GACGAAGGATATT-GACTCGAGACAACACAAGTTCAACTTCACA
* *
28019 ACGAAGGGACGGCTGGTTGTCAAC-AATAATTTCCCAGTTTC
64 ACGAAGGGACGGCTGGTTGTCAACAAACAATTT-CCAGTTCC
* * * * * * * * *
28060 AGGGCCAATTTTAACTTCA-TAGTGAAGGATATTGGACCCAAGACAGCACAAGCTCAACTTCACA
1 AGAGCCAATTTCAACTCCACGA-CGAAGGATATT-GACTCGAGACAACACAAGTTCAACTTCACA
* * ** *
28124 GCGAAGGGGCGGCTGACTGTCGACAAACAATTT-C-G----
64 ACGAAGGGACGGCTGGTTGTCAACAAACAATTTCCAGTTCC
* *
28159 -GAGCCAATCTCAACTTCAC-AGCGAAGGATATTGAACTCGAGACAACACAAGTTCAACTTCACA
1 AGAGCCAATTTCAACTCCACGA-CGAAGGATATTG-ACTCGAGACAACACAAGTTCAACTTCACA
* *
28222 ACGAAGGGACGGCTGGTTGTCAAC-AATAATTTCCTAGTTTC
64 ACGAAGGGACGGCTGGTTGTCAACAAACAATTTCC-AGTTCC
* * * * * * *
28263 AGGGCCAATTTTAACTTCAC-AGCGAAGGATATTGGACCCAAGACAGCACAAGCTCAACTTCACA
1 AGAGCCAATTTCAACTCCACGA-CGAAGGATATT-GACTCGAGACAACACAAGTTCAACTTCACA
* * ** * *
28327 GCGAAGGGGCGGCTGACTGTCGACAAGCAATTT-C-G----
64 ACGAAGGGACGGCTGGTTGTCAACAAACAATTTCCAGTTCC
* *
28362 -GAGCCAATCTCAACTTCAC-AGCGAAGGATATTGGACTCGAGACAACACAAGTTCAACTTCACA
1 AGAGCCAATTTCAACTCCACGA-CGAAGGATATT-GACTCGAGACAACACAAGTTCAACTTCACA
* *
28425 GCGAAGGGACGGCTGGTTGTCAACAAACAATTTCCCAATTCC
64 ACGAAGGGACGGCTGGTTGTCAACAAACAATTT-CCAGTTCC
*
28467 AGAGCCAATTTCAACTCCACGAC-AGAGGATATCGTGCTACCCGAGACAACACAAGTTCAACTTC
1 AGAGCCAATTTCAACTCCACGACGA-AGGATAT--TG--ACTCGAGACAACACAAGTTCAACTTC
* * *
28531 ACAACGAAGGGACGGCTGGTTGTCAACGAACAACTTTTCAGTTTC
61 ACAACGAAGGGACGGCTGGTTGTCAACAAACAA-TTTCCAGTTCC
** * * *
28576 A-TCCGCGATTTTAACTCCACGACGGAGGATATCGTGCCACTCGAGACAACACAAGTTCAACTTC
1 AGAGC-CAATTTCAACTCCACGACGAAGGATAT--TG--ACTCGAGACAACACAAGTTCAACTTC
* * * *
28640 ACAACGAAGGGACGGCTGGTTGTCAACAAACATTTTTCAAATTTC
61 ACAACGAAGGGACGGCTGGTTGTCAACAAACA-ATTTCCAGTTCC
28685 AGAGCCAATTTCAACTTCGCA-G-CGAAGGATATTGGACTCGAGACAACACAAGTTCAACTTCAC
1 AGAGCCAATTTCAAC-TC-CACGACGAAGGATATT-GACTCGAGACAACACAAGTTCAACTTCAC
* *
28748 AACGAAGGGACGGCTGATTGTCAAC-AA-GATTT-C-GTT-C
63 AACGAAGGGACGGCTGGTTGTCAACAAACAATTTCCAGTTCC
* * * * * * *
28785 AGAGTCAATTTCATCTTCACAACGAAGGATATTAGACTCGAGACAGCACAAGCTCAACTTCACAG
1 AGAGCCAATTTCAACTCCACGACGAAGGATATT-GACTCGAGACAACACAAGTTCAACTTCACAA
* ** *
28850 CGAAGGGGCGGCTGACTGTCAACAAATAATTTCCCAGTTCC
65 CGAAGGGACGGCTGGTTGTCAACAAACAATTT-CCAGTTCC
* * *
28891 AGAACCAATTTCAACTTCAC-AGCGGAGGATATTGGACTCG
1 AGAGCCAATTTCAACTCCACGA-CGAAGGATATT-GACTCG
28931 GAACAATATT
Statistics
Matches: 723, Mismatches: 102, Indels: 91
0.79 0.11 0.10
Matches are distributed among these distances:
97 8 0.01
98 158 0.22
99 1 0.00
100 76 0.11
101 4 0.01
102 4 0.01
103 6 0.01
104 2 0.00
105 152 0.21
106 125 0.17
107 3 0.00
108 3 0.00
109 172 0.24
110 7 0.01
111 2 0.00
ACGTcount: A:0.33, C:0.25, G:0.21, T:0.22
Consensus pattern (104 bp):
AGAGCCAATTTCAACTCCACGACGAAGGATATTGACTCGAGACAACACAAGTTCAACTTCACAAC
GAAGGGACGGCTGGTTGTCAACAAACAATTTCCAGTTCC
Found at i:29455 original size:35 final size:37
Alignment explanation
Indices: 29388--29459 Score: 112
Period size: 35 Copynumber: 2.0 Consensus size: 37
29378 CTTTTTCGTC
29388 CTACTAGGATTCAAACTCTAAAAAATAAGATAGAATT
1 CTACTAGGATTCAAACTCTAAAAAATAAGATAGAATT
* *
29425 CTACTAGGATTC-AACTCT-TAAAATAGGATAGAATT
1 CTACTAGGATTCAAACTCTAAAAAATAAGATAGAATT
29460 TTGCTATGTT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
35 15 0.45
36 6 0.18
37 12 0.36
ACGTcount: A:0.44, C:0.14, G:0.12, T:0.29
Consensus pattern (37 bp):
CTACTAGGATTCAAACTCTAAAAAATAAGATAGAATT
Found at i:29923 original size:11 final size:11
Alignment explanation
Indices: 29903--29988 Score: 50
Period size: 11 Copynumber: 7.3 Consensus size: 11
29893 TTAATTATTT
*
29903 TTATTCTAATA
1 TTATTTTAATA
*
29914 TTATTTTAATG
1 TTATTTTAATA
29925 TT-TTTTAA-A
1 TTATTTTAATA
29934 GTTATTATATATATA
1 -TTATT-T-TA-ATA
29949 TATATTTATAACTA
1 T-TATTT-TAA-TA
*
29963 TTATATTTATTA
1 TTAT-TTTAATA
*
29975 TTATTTTACTA
1 TTATTTTAATA
29986 TTA
1 TTA
29989 ACGTATATAA
Statistics
Matches: 61, Mismatches: 5, Indels: 18
0.73 0.06 0.21
Matches are distributed among these distances:
10 8 0.13
11 22 0.36
12 7 0.11
13 8 0.13
14 11 0.18
15 5 0.08
ACGTcount: A:0.35, C:0.03, G:0.02, T:0.59
Consensus pattern (11 bp):
TTATTTTAATA
Found at i:30176 original size:16 final size:16
Alignment explanation
Indices: 30155--30188 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
30145 CATGTATTTA
30155 TATTATATTACATTAT
1 TATTATATTACATTAT
* *
30171 TATTATTTTACTTTAT
1 TATTATATTACATTAT
30187 TA
1 TA
30189 AATTATTTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.32, C:0.06, G:0.00, T:0.62
Consensus pattern (16 bp):
TATTATATTACATTAT
Found at i:30234 original size:17 final size:16
Alignment explanation
Indices: 30205--30244 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
30195 TTTTTTTCGT
*
30205 TATAATATTTATTATA
1 TATAATATATATTATA
30221 TATATATATATATTATA
1 TATA-ATATATATTATA
30238 TCATAAT
1 T-ATAAT
30245 GTTTTTTATT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
16 4 0.19
17 14 0.67
18 3 0.14
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.53
Consensus pattern (16 bp):
TATAATATATATTATA
Found at i:32038 original size:2 final size:2
Alignment explanation
Indices: 32031--32097 Score: 134
Period size: 2 Copynumber: 33.5 Consensus size: 2
32021 ATACTTACTT
32031 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
32073 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
32098 TTAAAATAAG
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 65 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:35620 original size:25 final size:26
Alignment explanation
Indices: 35582--35634 Score: 81
Period size: 25 Copynumber: 2.1 Consensus size: 26
35572 GAGTTGATTC
*
35582 TAAAGGACAGATTTATAAAATTTAAA
1 TAAAGGACAAATTTATAAAATTTAAA
*
35608 TAAA-GACAAATTTATAAAATTTTAA
1 TAAAGGACAAATTTATAAAATTTAAA
35633 TA
1 TA
35635 GAAATAAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 21 0.84
26 4 0.16
ACGTcount: A:0.55, C:0.04, G:0.08, T:0.34
Consensus pattern (26 bp):
TAAAGGACAAATTTATAAAATTTAAA
Found at i:35645 original size:19 final size:21
Alignment explanation
Indices: 35623--35666 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 21
35613 ACAAATTTAT
*
35623 AAAATTT-TAATAGAAATA-A
1 AAAATTTCTAATAAAAATATA
35642 AAAATTTCTAATAAAAATATA
1 AAAATTTCTAATAAAAATATA
35663 AAAA
1 AAAA
35667 AGTATAAATA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 7 0.32
20 10 0.45
21 5 0.23
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.30
Consensus pattern (21 bp):
AAAATTTCTAATAAAAATATA
Found at i:36776 original size:24 final size:24
Alignment explanation
Indices: 36744--36790 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
36734 TGTTAAGCAT
*
36744 ACATAAACGAACATAATCGAACGA
1 ACATAAACGAACATAACCGAACGA
36768 ACATAAACGAACATAACCGAACG
1 ACATAAACGAACATAACCGAACG
36791 TTCACAAACG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.53, C:0.23, G:0.13, T:0.11
Consensus pattern (24 bp):
ACATAAACGAACATAACCGAACGA
Found at i:36799 original size:24 final size:24
Alignment explanation
Indices: 36748--36800 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
36738 AAGCATACAT
* *
36748 AAACGAACATAATCGAACGAACAT
1 AAACGAACATAACCGAACGAACAC
**
36772 AAACGAACATAACCGAACGTTCAC
1 AAACGAACATAACCGAACGAACAC
36796 AAACG
1 AAACG
36801 TAAATGAACG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.51, C:0.25, G:0.13, T:0.11
Consensus pattern (24 bp):
AAACGAACATAACCGAACGAACAC
Found at i:38205 original size:26 final size:25
Alignment explanation
Indices: 38159--38211 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 25
38149 TATATATATC
*
38159 AATAAGTAATAATACAAAAAATTTT
1 AATAAGTAAAAATACAAAAAATTTT
38184 AATAAGATAAAAATA-AATAAAATTTT
1 AATAAG-TAAAAATACAA-AAAATTTT
38210 AA
1 AA
38212 AATAATCAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
25 8 0.32
26 17 0.68
ACGTcount: A:0.64, C:0.02, G:0.04, T:0.30
Consensus pattern (25 bp):
AATAAGTAAAAATACAAAAAATTTT
Found at i:41047 original size:21 final size:24
Alignment explanation
Indices: 41021--41071 Score: 63
Period size: 25 Copynumber: 2.2 Consensus size: 24
41011 ATAGATTTTT
41021 TATATAA-CT-TAA-CAACTAATA
1 TATATAATCTATAATCAACTAATA
*
41042 TATATAATCTACTAATCAACTAATC
1 TATATAATCTA-TAATCAACTAATA
41067 TATAT
1 TATAT
41072 TAAGTATTGT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
21 7 0.28
22 2 0.08
24 3 0.12
25 13 0.52
ACGTcount: A:0.47, C:0.16, G:0.00, T:0.37
Consensus pattern (24 bp):
TATATAATCTATAATCAACTAATA
Found at i:49326 original size:23 final size:22
Alignment explanation
Indices: 49300--49348 Score: 82
Period size: 23 Copynumber: 2.2 Consensus size: 22
49290 TTGTTATTGT
49300 TATTTTTATTATTATTTTCAAGC
1 TATTTTTATTATTA-TTTCAAGC
49323 TATTTTTATTATTATTTCAAGC
1 TATTTTTATTATTATTTCAAGC
49345 -ATTT
1 TATTT
49349 GTCACACTAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
21 4 0.15
22 8 0.31
23 14 0.54
ACGTcount: A:0.27, C:0.08, G:0.04, T:0.61
Consensus pattern (22 bp):
TATTTTTATTATTATTTCAAGC
Found at i:54435 original size:3 final size:3
Alignment explanation
Indices: 54427--54477 Score: 102
Period size: 3 Copynumber: 17.0 Consensus size: 3
54417 AAAAAACTAT
54427 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
54475 ATA
1 ATA
54478 TAAGGGAGGT
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 48 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:55222 original size:32 final size:32
Alignment explanation
Indices: 55152--55259 Score: 123
Period size: 32 Copynumber: 3.3 Consensus size: 32
55142 TTTTCTAACT
* *
55152 TACTAACATTCTAACTTTTATTTTATCGTTCA
1 TACTAACATTCTAACTTTTATTTTATTGTTTA
55184 -AGCTAACATTC-AGACTTTTATTTTATTGTTTA
1 TA-CTAACATTCTA-ACTTTTATTTTATTGTTTA
*
55216 TACTAACATACTAACTTTTTATTTTTATTGTTCT-
1 TACTAACATTCTAAC-TTTTA-TTTTATTGTT-TA
55250 TACTAACATT
1 TACTAACATT
55260 TTATTTTATT
Statistics
Matches: 65, Mismatches: 4, Indels: 12
0.80 0.05 0.15
Matches are distributed among these distances:
31 2 0.03
32 36 0.55
33 7 0.11
34 19 0.29
35 1 0.02
ACGTcount: A:0.29, C:0.16, G:0.05, T:0.51
Consensus pattern (32 bp):
TACTAACATTCTAACTTTTATTTTATTGTTTA
Found at i:55526 original size:15 final size:14
Alignment explanation
Indices: 55475--55527 Score: 56
Period size: 14 Copynumber: 3.8 Consensus size: 14
55465 TTTCTACTCC
*
55475 TTTAATTTTCTGCA
1 TTTAATTTTCAGCA
55489 TTT--TTTTCAGTCA
1 TTTAATTTTCAG-CA
*
55502 TTTTAATTTCCAGCA
1 -TTTAATTTTCAGCA
55517 TTTAATTTTCA
1 TTTAATTTTCA
55528 TTTAAGCATC
Statistics
Matches: 32, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
12 6 0.19
13 2 0.06
14 16 0.50
15 2 0.06
16 6 0.19
ACGTcount: A:0.23, C:0.15, G:0.06, T:0.57
Consensus pattern (14 bp):
TTTAATTTTCAGCA
Found at i:56614 original size:11 final size:10
Alignment explanation
Indices: 56567--56624 Score: 62
Period size: 10 Copynumber: 5.7 Consensus size: 10
56557 TTTTACCTTA
*
56567 TTATATTGTT
1 TTATTTTGTT
*
56577 TTATTTTATT
1 TTATTTTGTT
* *
56587 TTATCTCGTT
1 TTATTTTGTT
*
56597 TTGTTTTGTTT
1 TTATTTTG-TT
56608 TTATTTTGTT
1 TTATTTTGTT
56618 TTATTTT
1 TTATTTT
56625 TATCTTTGAT
Statistics
Matches: 38, Mismatches: 9, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
10 29 0.76
11 9 0.24
ACGTcount: A:0.12, C:0.03, G:0.09, T:0.76
Consensus pattern (10 bp):
TTATTTTGTT
Found at i:56616 original size:16 final size:16
Alignment explanation
Indices: 56595--56632 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
56585 TTTTATCTCG
*
56595 TTTTGTTTTGTTTTTA
1 TTTTGTTTTATTTTTA
56611 TTTTGTTTTATTTTTA
1 TTTTGTTTTATTTTTA
56627 TCTTTG
1 T-TTTG
56633 ATAAAAAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
16 16 0.80
17 4 0.20
ACGTcount: A:0.08, C:0.03, G:0.11, T:0.79
Consensus pattern (16 bp):
TTTTGTTTTATTTTTA
Found at i:64310 original size:83 final size:83
Alignment explanation
Indices: 64196--64348 Score: 198
Period size: 83 Copynumber: 1.8 Consensus size: 83
64186 AAGGAATAAA
* * * * * * *
64196 GTTGTCCACCGACCAGGTATTCTAAATGCGAAGGAGCAGTGTCATCCTCAGACAACCAGACTTTC
1 GTTGTCCACCGACCAGATATCCTAAACGCGAAGGAGCAATGTCATCATCAGAAAACCAGACTTAC
64261 TCAACACGATTGAACAAT
66 TCAACACGATTGAACAAT
* * * * *
64279 GTTGTCCACCGACCAGATCTCCTCAACGCGAATGAGCAATGTCATCATTAGAAAATCAGACTTAC
1 GTTGTCCACCGACCAGATATCCTAAACGCGAAGGAGCAATGTCATCATCAGAAAACCAGACTTAC
64344 TCAAC
66 TCAAC
64349 GCGAAGGAAC
Statistics
Matches: 58, Mismatches: 12, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
83 58 1.00
ACGTcount: A:0.32, C:0.27, G:0.18, T:0.23
Consensus pattern (83 bp):
GTTGTCCACCGACCAGATATCCTAAACGCGAAGGAGCAATGTCATCATCAGAAAACCAGACTTAC
TCAACACGATTGAACAAT
Found at i:64367 original size:83 final size:83
Alignment explanation
Indices: 64170--64367 Score: 182
Period size: 83 Copynumber: 2.4 Consensus size: 83
64160 TAAAATGGTT
* * * * * * *
64170 AGACTTCCTAAACACTAAGGAATAA-AGTTGTCCACCGACCAGGTATTCTAAATGCGAAGGAGCA
1 AGACTTACTCAACACGAAGGAACAATA-TTGTCCACCGACCAGATATCCTAAACGCGAAGGAGCA
* * *
64234 GTGTCATCCTCAGACAACC
65 ATGTCATCATCAGAAAACC
* ** * * * *
64253 AGACTTTCTCAACACGATTGAACAATGTTGTCCACCGACCAGATCTCCTCAACGCGAATGAGCAA
1 AGACTTACTCAACACGAAGGAACAATATTGTCCACCGACCAGATATCCTAAACGCGAAGGAGCAA
* *
64318 TGTCATCATTAGAAAATC
66 TGTCATCATCAGAAAACC
* **
64336 AGACTTACTCAACGCGAAGGAACCTTATTGTC
1 AGACTTACTCAACACGAAGGAACAATATTGTC
64368 TCGAAACTAC
Statistics
Matches: 89, Mismatches: 25, Indels: 2
0.77 0.22 0.02
Matches are distributed among these distances:
83 89 1.00
ACGTcount: A:0.34, C:0.26, G:0.18, T:0.23
Consensus pattern (83 bp):
AGACTTACTCAACACGAAGGAACAATATTGTCCACCGACCAGATATCCTAAACGCGAAGGAGCAA
TGTCATCATCAGAAAACC
Found at i:64579 original size:61 final size:58
Alignment explanation
Indices: 64394--64587 Score: 142
Period size: 61 Copynumber: 3.2 Consensus size: 58
64384 ACTTCTAGAA
* * * *
64394 CATCTTCAACACCAAATTATCTCCAAATTGATCCAATTTTCTCAACGAGAAGGAACAACGT
1 CATCTTCAACA-CAAATTATATCCAAATTGA-CCAATTTCCTCAACGATAAAGAACAA-GT
* * * ** * * *
64455 CATCTTCAAGAAACAATT-TATCTGAAAGCGACCATATCTCTTCAAC-ATGGACA-AACAGAGT
1 CATCTTCAACACA-AATTATATC-CAAATTGACCA-ATTTCCTCAACGAT--AAAGAACA-AGT
*
64516 CATCTTCAATATCAAATTATATCCAAATTGACCCAATTTCCTCAACGATAAAGAACAATGT
1 CATCTTCAACA-CAAATTATATCCAAATTGA-CCAATTTCCTCAACGATAAAGAACAA-GT
64577 CATCTTCAACA
1 CATCTTCAACA
64588 AACAATTTTT
Statistics
Matches: 100, Mismatches: 21, Indels: 24
0.69 0.14 0.17
Matches are distributed among these distances:
60 11 0.11
61 77 0.77
62 12 0.12
ACGTcount: A:0.39, C:0.25, G:0.09, T:0.27
Consensus pattern (58 bp):
CATCTTCAACACAAATTATATCCAAATTGACCAATTTCCTCAACGATAAAGAACAAGT
Found at i:64620 original size:122 final size:122
Alignment explanation
Indices: 64394--64725 Score: 396
Period size: 122 Copynumber: 2.7 Consensus size: 122
64384 ACTTCTAGAA
* *
64394 CATCTTCAACACCAAATTATCTCCAAATTGATCCAATTTTCTCAACGAGAAGGAACAACGTCATC
1 CATCTTCAACACCAAATTATCTCCAAATTGACCCAATTTCCTCAACGAGAAGGAACAACGTCATC
* * * * *
64459 TTCAAGAAACAATTTATCTGAAAGCGACCATATCTCTTCAACATGGACAAACAGAGT
66 TTCAACAAACAATTTATCTGAAAGCAACCAGATCCCTTCAACAAGGACAAACAGAGT
* * * * * *
64516 CATCTTCAATATCAAATTATATCCAAATTGACCCAATTTCCTCAACGATAAAGAACAATGTCATC
1 CATCTTCAACACCAAATTATCTCCAAATTGACCCAATTTCCTCAACGAGAAGGAACAACGTCATC
* * ** **
64581 TTCAACAAACAATTTTTCTGAACGCAACCAGATCCCTTCAACAAGGATGAGTAGAGT
66 TTCAACAAACAATTTATCTGAAAGCAACCAGATCCCTTCAACAAGGACAAACAGAGT
* * * * * * *
64638 CGTCTTCAACACCAAATTATCTCTAGATTGACTC-GTCTTCCTTAACAAGAAGGAACAACGTCAT
1 CATCTTCAACACCAAATTATCTCCAAATTGACCCAAT-TTCCTCAACGAGAAGGAACAACGTCAT
* *
64702 CTTCAGCAAACAATTTACCTGAAA
65 CTTCAACAAACAATTTATCTGAAA
64726 ATGGCTAGAA
Statistics
Matches: 173, Mismatches: 36, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
121 1 0.01
122 172 0.99
ACGTcount: A:0.38, C:0.25, G:0.11, T:0.27
Consensus pattern (122 bp):
CATCTTCAACACCAAATTATCTCCAAATTGACCCAATTTCCTCAACGAGAAGGAACAACGTCATC
TTCAACAAACAATTTATCTGAAAGCAACCAGATCCCTTCAACAAGGACAAACAGAGT
Found at i:65922 original size:34 final size:32
Alignment explanation
Indices: 65827--65934 Score: 139
Period size: 32 Copynumber: 3.3 Consensus size: 32
65817 TTTTCTAACT
*
65827 TACTAACATTCTAACTTTTATTTTATCGTTCGA
1 TACTAACATTCTAACTTTTATTTTATTGTTC-A
65860 -ACTAACATTCTAACTTTTATTTTATTGTTCA
1 TACTAACATTCTAACTTTTATTTTATTGTTCA
* *
65891 TACTAACATAT-TGACTTTTTATTTTTATTGTTCT
1 TACTAACAT-TCTAAC-TTTTA-TTTTATTGTTCA
65925 TACTAACATT
1 TACTAACATT
65935 TTATTTTATT
Statistics
Matches: 68, Mismatches: 3, Indels: 8
0.86 0.04 0.10
Matches are distributed among these distances:
31 1 0.01
32 40 0.59
33 7 0.10
34 20 0.29
ACGTcount: A:0.28, C:0.16, G:0.05, T:0.52
Consensus pattern (32 bp):
TACTAACATTCTAACTTTTATTTTATTGTTCA
Found at i:66171 original size:15 final size:15
Alignment explanation
Indices: 66147--66184 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
66137 TTTCTGCCCC
66147 TTTAATTTTA-TGCAT
1 TTTAATTTTAGT-CAT
*
66162 TTTTATTTTAGTCAT
1 TTTAATTTTAGTCAT
66177 TTTAATTT
1 TTTAATTT
66185 CCAACATTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
15 19 0.95
16 1 0.05
ACGTcount: A:0.24, C:0.05, G:0.05, T:0.66
Consensus pattern (15 bp):
TTTAATTTTAGTCAT
Found at i:66702 original size:20 final size:21
Alignment explanation
Indices: 66664--66736 Score: 82
Period size: 20 Copynumber: 3.5 Consensus size: 21
66654 GGGTTTTTTC
*
66664 TTTATTTTTACCTTATTATCTTGT
1 TTTATTTTTA--TT-TTATCTCGT
66688 TTTA-TTTTATTTTATCTCGT
1 TTTATTTTTATTTTATCTCGT
66708 TTTATTTTTATTTTAT-T--T
1 TTTATTTTTATTTTATCTCGT
66726 TTTATTTTTAT
1 TTTATTTTTAT
66737 ATTTGATAAA
Statistics
Matches: 47, Mismatches: 1, Indels: 8
0.84 0.02 0.14
Matches are distributed among these distances:
18 12 0.26
20 13 0.28
21 13 0.28
23 5 0.11
24 4 0.09
ACGTcount: A:0.16, C:0.07, G:0.03, T:0.74
Consensus pattern (21 bp):
TTTATTTTTATTTTATCTCGT
Found at i:68240 original size:22 final size:20
Alignment explanation
Indices: 68194--68248 Score: 56
Period size: 22 Copynumber: 2.6 Consensus size: 20
68184 CCAAACGTTC
* *
68194 GGTATGAATACCCAATATTT
1 GGTATGAATATCAAATATTT
*
68214 TGTATGAATATCAAATCCATTT
1 GGTATGAATATCAAAT--ATTT
*
68236 GGTATGCATATCA
1 GGTATGAATATCA
68249 GCCCTCCAAT
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
20 13 0.46
22 15 0.54
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.36
Consensus pattern (20 bp):
GGTATGAATATCAAATATTT
Found at i:72841 original size:18 final size:18
Alignment explanation
Indices: 72803--72838 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
72793 ATATATACAT
*
72803 ATAATAATAACATGAATA
1 ATAAAAATAACATGAATA
72821 ATAAAAATAA-ATGAATA
1 ATAAAAATAACATGAATA
72838 A
1 A
72839 ATATTCATAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.67, C:0.03, G:0.06, T:0.25
Consensus pattern (18 bp):
ATAAAAATAACATGAATA
Found at i:73248 original size:37 final size:37
Alignment explanation
Indices: 73198--73302 Score: 147
Period size: 37 Copynumber: 2.8 Consensus size: 37
73188 GTGCTTGTGG
* * * *
73198 ATCCTATCTTTAGGAATTTAAATCTTAGTAGAACTCT
1 ATCCTATTTTTAGGAGTTTGAATCCTAGTAGAACTCT
* * *
73235 ATCCTATTTTTAGGAGTTTGAATCCTAGTAAAATTTT
1 ATCCTATTTTTAGGAGTTTGAATCCTAGTAGAACTCT
73272 ATCCTATTTTTAGGAGTTTGAATCCTAGTAG
1 ATCCTATTTTTAGGAGTTTGAATCCTAGTAG
73303 GACGAAAATG
Statistics
Matches: 60, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 60 1.00
ACGTcount: A:0.30, C:0.13, G:0.14, T:0.43
Consensus pattern (37 bp):
ATCCTATTTTTAGGAGTTTGAATCCTAGTAGAACTCT
Found at i:74158 original size:105 final size:105
Alignment explanation
Indices: 73845--74475 Score: 862
Period size: 105 Copynumber: 6.0 Consensus size: 105
73835 GCATTGTTCT
* * * *
73845 GAGTCCAATATCCTCCGTCGTGAAGTTGAAATTGGCTCTG-GAACTGGGAAATTGTTTGTTGACA
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAG-ATTGGGAAGTTG-TTGTTGACA
* * * *
73909 ACCAGTC-GTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTC
64 AGCAG-CGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* * * *
73951 GAGTCCAATATCATTCGCTGTGAAGTTGAAATTGACTCTGA-A-T--GAAATT-TTGTTGACAAG
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAGATTGGGAAGTTGTTGTTGACAAG
* * * * * *
74011 TAGAGGTACCTTCGTCGTGGAGTTGAACTTGCATTGTTTG
66 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
*
74051 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAGATTGGGAAGTTGTTGTTGAAAAG
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAGATTGGGAAGTTGTTGTTGACAAG
74116 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
66 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
74156 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAGATTGGGAAGTTGTTGTTGACAAG
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAGATTGGGAAGTTGTTGTTGACAAG
* **
74221 CAACGGTCCCTTCACCGTGAAGTTGAACTTGCGTTGTCTG
66 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* * *
74261 AAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTGTTGACAAG
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAGATTGGGAAGTTGTTGTTGACAAG
*
74326 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTTTG
66 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* * *
74366 GAGTCTAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAA
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAGATTGGGAAGTTG-TTGTTGACAA
* * * * * *
74431 CCAGCCGTCCCTTCGTTGAGAAGTTGAACTTGTGTTGTCTC
65 GCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
74472 GAGT
1 GAGT
74476 GTCACGATAT
Statistics
Matches: 471, Mismatches: 46, Indels: 16
0.88 0.09 0.03
Matches are distributed among these distances:
100 78 0.17
101 1 0.00
102 7 0.01
104 6 0.01
105 296 0.63
106 83 0.18
ACGTcount: A:0.23, C:0.17, G:0.27, T:0.34
Consensus pattern (105 bp):
GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAGATTGGGAAGTTGTTGTTGACAAG
CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
Found at i:74722 original size:36 final size:36
Alignment explanation
Indices: 74675--74750 Score: 116
Period size: 36 Copynumber: 2.1 Consensus size: 36
74665 TGTTTGGAGA
* * *
74675 GAAACTGTCTCAAGGGAGACAAAATTCGTTTCAAGG
1 GAAACTATCTCAAGCGAGACAAAATTCATTTCAAGG
*
74711 GAAACTATCTCAAGCGAGATAAAATTCATTTCAAGG
1 GAAACTATCTCAAGCGAGACAAAATTCATTTCAAGG
74747 GAAA
1 GAAA
74751 TGTTTTCAAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.41, C:0.16, G:0.21, T:0.22
Consensus pattern (36 bp):
GAAACTATCTCAAGCGAGACAAAATTCATTTCAAGG
Found at i:74871 original size:106 final size:104
Alignment explanation
Indices: 74650--74969 Score: 506
Period size: 106 Copynumber: 3.1 Consensus size: 104
74640 TTCGTTAAAT
* ** *
74650 TGTTTTCAAAGTTTATGTTTGGAGAGAAACTGTCTCAAGGGAGACAAAA--TTC-GTTTCAAGGG
1 TGTTTTCAATGTTTATGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTTCTGTTTCGAGGG
*
74712 AAACTATCTCAAGCGAG-ATAAAATTCATTTCAAGGGAAA
66 AAACTATCTCAAG-GAGAAAAAAATTCATTTCAAGGGAAA
74751 TGTTTTCAATGTTTATGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTTCTGTTTCGAGGG
1 TGTTTTCAATGTTTATGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTTCTGTTTCGAGGG
*
74816 AAACTATCTCAAGAGAGAAAAAAAAATCATTTCAAGGGAAA
66 AAACTATCTCAAG-GAG-AAAAAAATTCATTTCAAGGGAAA
74857 TGTTTTCAATGTTTATGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTTCTGTTTCGAGGG
1 TGTTTTCAATGTTTATGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTTCTGTTTCGAGGG
*
74922 AAACTATCTC-AGGAGAGAAAAAATTAATTTCAAGGGAAA
66 AAACTATCTCAAGGAGA-AAAAAATTCATTTCAAGGGAAA
74961 TGTTTTCAA
1 TGTTTTCAA
74970 GAGAAATTGT
Statistics
Matches: 204, Mismatches: 9, Indels: 9
0.92 0.04 0.04
Matches are distributed among these distances:
101 46 0.23
103 4 0.02
104 57 0.28
105 2 0.01
106 95 0.47
ACGTcount: A:0.37, C:0.12, G:0.21, T:0.30
Consensus pattern (104 bp):
TGTTTTCAATGTTTATGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTTCTGTTTCGAGGG
AAACTATCTCAAGGAGAAAAAAATTCATTTCAAGGGAAA
Found at i:74926 original size:39 final size:39
Alignment explanation
Indices: 74872--74946 Score: 98
Period size: 39 Copynumber: 1.9 Consensus size: 39
74862 TCAATGTTTA
* *
74872 TGTTTCAAGAGAAACTGTCTCAAGG-GAGACAAAATTTTC
1 TGTTTCAAGAGAAACTATCTC-AGGAGAGAAAAAATTTTC
* *
74911 TGTTTCGAGGGAAACTATCTCAGGAGAGAAAAAATT
1 TGTTTCAAGAGAAACTATCTCAGGAGAGAAAAAATT
74947 AATTTCAAGG
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
38 3 0.10
39 28 0.90
ACGTcount: A:0.37, C:0.13, G:0.23, T:0.27
Consensus pattern (39 bp):
TGTTTCAAGAGAAACTATCTCAGGAGAGAAAAAATTTTC
Found at i:76645 original size:183 final size:183
Alignment explanation
Indices: 76337--76873 Score: 934
Period size: 183 Copynumber: 2.9 Consensus size: 183
76327 ATCAGGTTTA
*
76337 ACTGAAGGGTTCATCTCATCACAAAGTCTTTGACCTGACAAAAGCA-TCGGAGCAAACACCGAAT
1 ACTGAAGGGTTCATCTCATCACAAAGTCTTTGGCCTGACAAAAGCAGT-GGAGCAAACACCGAAT
* * **
76401 TGCCAAGTGTCCGAGCAATGTCAT-GATTTGAATGTAATCTATTCATAAAGCCAGGGCTTTCGAG
65 TACCAAGTGTCCGAGCAGTGTCATAG-TTTGAACATAATCTATTCATAAAGCCAGGGCTTTCGAG
*
76465 TTTCCTCTATAACCAATTGCCTTAGTGGAATAGCTCAGCTTTAGAGGGACAAATC
129 TTTCCTCTATAACCAATTGCCTTAGTGGAATAGCTCAGCTTTAGAGAGACAAATC
* *
76520 ACTGAAGGGTTCGTCTCATCACAAAGTCTTTGGCCTGACAAAAGCAGTGGAGAAAACACCGAATT
1 ACTGAAGGGTTCATCTCATCACAAAGTCTTTGGCCTGACAAAAGCAGTGGAGCAAACACCGAATT
*
76585 ACCAAGTGTCCGAGCAGTGTCATAGTTTGAACATAATCTATTCATAAAGTCAGGGCTTTCGAGTT
66 ACCAAGTGTCCGAGCAGTGTCATAGTTTGAACATAATCTATTCATAAAGCCAGGGCTTTCGAGTT
76650 TCCTCTATAACCAATTGCCTTAGTGGAATAGCTCAGCTTTAGAGAGACAAATC
131 TCCTCTATAACCAATTGCCTTAGTGGAATAGCTCAGCTTTAGAGAGACAAATC
**
76703 ACTGAAGGGTTCATCTCATCACAAAGTCTTTGGCCTGACAAAAATAGTGGAGCAAACACCGAATT
1 ACTGAAGGGTTCATCTCATCACAAAGTCTTTGGCCTGACAAAAGCAGTGGAGCAAACACCGAATT
76768 ACCAAGTGTCCGAGCAGTGTCATAGTTTGAACATAATCTATTCATAAAGCCAGGGCTTTCGAGTT
66 ACCAAGTGTCCGAGCAGTGTCATAGTTTGAACATAATCTATTCATAAAGCCAGGGCTTTCGAGTT
*
76833 TCCTCTATAACCAATTACCTTAGTGGAATAGCTCAGCTTTA
131 TCCTCTATAACCAATTGCCTTAGTGGAATAGCTCAGCTTTA
76874 CGGATTTAAT
Statistics
Matches: 337, Mismatches: 15, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
183 335 0.99
184 2 0.01
ACGTcount: A:0.31, C:0.21, G:0.20, T:0.27
Consensus pattern (183 bp):
ACTGAAGGGTTCATCTCATCACAAAGTCTTTGGCCTGACAAAAGCAGTGGAGCAAACACCGAATT
ACCAAGTGTCCGAGCAGTGTCATAGTTTGAACATAATCTATTCATAAAGCCAGGGCTTTCGAGTT
TCCTCTATAACCAATTGCCTTAGTGGAATAGCTCAGCTTTAGAGAGACAAATC
Found at i:80920 original size:2 final size:2
Alignment explanation
Indices: 80915--80946 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
80905 AAAATATAAA
80915 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
80947 CAAAGTATTA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:81195 original size:25 final size:25
Alignment explanation
Indices: 81137--81187 Score: 68
Period size: 25 Copynumber: 2.1 Consensus size: 25
81127 TTTTTTTTAA
* **
81137 AAAAAAAAT-ATAATAATAATGAAT
1 AAAAAAAATGAAAATAATAAAAAAT
81161 AAAAAAAATGAAAATAATAAAAAAT
1 AAAAAAAATGAAAATAATAAAAAAT
81186 AA
1 AA
81188 TATAAATGTA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
24 9 0.39
25 14 0.61
ACGTcount: A:0.76, C:0.00, G:0.04, T:0.20
Consensus pattern (25 bp):
AAAAAAAATGAAAATAATAAAAAAT
Found at i:81470 original size:16 final size:15
Alignment explanation
Indices: 81451--81482 Score: 55
Period size: 16 Copynumber: 2.1 Consensus size: 15
81441 ATATACATAT
81451 ATAAAATAATAGAATA
1 ATAAAATAAT-GAATA
81467 ATAAAATAATGAATA
1 ATAAAATAATGAATA
81482 A
1 A
81483 AATATTCATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.69, C:0.00, G:0.06, T:0.25
Consensus pattern (15 bp):
ATAAAATAATGAATA
Found at i:81893 original size:37 final size:37
Alignment explanation
Indices: 81843--81947 Score: 138
Period size: 37 Copynumber: 2.8 Consensus size: 37
81833 GTGCTTGTGG
* * * *
81843 ATCCTATCTTTAGGAATTTAAATCTTAGTAGAACTCT
1 ATCCTATTTTTAGGAGTTTGAATCCTAGTAGAACTCT
* * * *
81880 ATCCTATTTTTAGGAGTTTGAATCCTAGCAAAATTTT
1 ATCCTATTTTTAGGAGTTTGAATCCTAGTAGAACTCT
81917 ATCCTATTTTTAGGAGTTTGAATCCTAGTAG
1 ATCCTATTTTTAGGAGTTTGAATCCTAGTAG
81948 GACGAAAATG
Statistics
Matches: 58, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
37 58 1.00
ACGTcount: A:0.30, C:0.14, G:0.14, T:0.42
Consensus pattern (37 bp):
ATCCTATTTTTAGGAGTTTGAATCCTAGTAGAACTCT
Found at i:82305 original size:15 final size:15
Alignment explanation
Indices: 82258--82306 Score: 53
Period size: 15 Copynumber: 3.3 Consensus size: 15
82248 GACCTTATCT
* *
82258 GCCCTGCATCTGCCC
1 GCCCTGCATCCGTCC
* * *
82273 GCCTTGCATCGGTTC
1 GCCCTGCATCCGTCC
82288 GCCCTGCATCCGTCC
1 GCCCTGCATCCGTCC
82303 GCCC
1 GCCC
82307 ACTAAATACC
Statistics
Matches: 27, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
15 27 1.00
ACGTcount: A:0.06, C:0.49, G:0.22, T:0.22
Consensus pattern (15 bp):
GCCCTGCATCCGTCC
Found at i:90659 original size:26 final size:26
Alignment explanation
Indices: 90623--90679 Score: 114
Period size: 26 Copynumber: 2.2 Consensus size: 26
90613 AAAAATAGGG
90623 GTCTTTTCGTCAATAGGGGCCTTTTT
1 GTCTTTTCGTCAATAGGGGCCTTTTT
90649 GTCTTTTCGTCAATAGGGGCCTTTTT
1 GTCTTTTCGTCAATAGGGGCCTTTTT
90675 GTCTT
1 GTCTT
90680 AAATTGAGAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.11, C:0.19, G:0.23, T:0.47
Consensus pattern (26 bp):
GTCTTTTCGTCAATAGGGGCCTTTTT
Found at i:91855 original size:23 final size:23
Alignment explanation
Indices: 91825--91891 Score: 116
Period size: 23 Copynumber: 2.9 Consensus size: 23
91815 TTTGCTAGAT
*
91825 AAAAGGTACACTAGTTTATTTAG
1 AAAAGGTATACTAGTTTATTTAG
91848 AAAAGGTATACTAGTTTATTTAG
1 AAAAGGTATACTAGTTTATTTAG
*
91871 AAAAGGTATACTAGCTTATTT
1 AAAAGGTATACTAGTTTATTT
91892 GAACTTTCTT
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 42 1.00
ACGTcount: A:0.39, C:0.07, G:0.16, T:0.37
Consensus pattern (23 bp):
AAAAGGTATACTAGTTTATTTAG
Found at i:92131 original size:29 final size:30
Alignment explanation
Indices: 92099--92167 Score: 76
Period size: 30 Copynumber: 2.4 Consensus size: 30
92089 ATTTTTGAAG
92099 GTGTTTATGTTT-A-TTTTAGAT-TCATATTT
1 GTGTTT-TGTTTAATTTTTA-ATATCATATTT
92128 GTG-TTTGTTTAAATTTTTAATATCATATTT
1 GTGTTTTGTTT-AATTTTTAATATCATATTT
92158 GTG-TTTGTTT
1 GTGTTTTGTTT
92168 CTTTATTTTT
Statistics
Matches: 36, Mismatches: 0, Indels: 7
0.84 0.00 0.16
Matches are distributed among these distances:
27 5 0.14
28 2 0.06
29 6 0.17
30 23 0.64
ACGTcount: A:0.20, C:0.03, G:0.14, T:0.62
Consensus pattern (30 bp):
GTGTTTTGTTTAATTTTTAATATCATATTT
Found at i:92295 original size:23 final size:23
Alignment explanation
Indices: 92248--92297 Score: 64
Period size: 23 Copynumber: 2.2 Consensus size: 23
92238 TATGTTTACC
* * *
92248 ACATGTTCATTTAGCGTTCGCCA
1 ACATGTTCATCTAGCATTCACCA
*
92271 ACATGTTCATCTAGCATTCATCA
1 ACATGTTCATCTAGCATTCACCA
92294 ACAT
1 ACAT
92298 ATTTGTTAGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.28, C:0.26, G:0.12, T:0.34
Consensus pattern (23 bp):
ACATGTTCATCTAGCATTCACCA
Found at i:93195 original size:30 final size:31
Alignment explanation
Indices: 93141--93204 Score: 94
Period size: 31 Copynumber: 2.1 Consensus size: 31
93131 TTTTAATTTT
* **
93141 TTTGAGGACTAATTTGAAATTTTTAATTAAA
1 TTTGAGGACCAAAATGAAATTTTTAATTAAA
93172 TTTGAGGACCAAAATGAAA-TTTTAATTAAA
1 TTTGAGGACCAAAATGAAATTTTTAATTAAA
93202 TTT
1 TTT
93205 ATACCCAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
30 14 0.47
31 16 0.53
ACGTcount: A:0.41, C:0.05, G:0.12, T:0.42
Consensus pattern (31 bp):
TTTGAGGACCAAAATGAAATTTTTAATTAAA
Found at i:101537 original size:21 final size:21
Alignment explanation
Indices: 101513--101552 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
101503 ACCGTCAACC
*
101513 AAATCCACTTCCAAATCCTCA
1 AAATCCAATTCCAAATCCTCA
*
101534 AAATCCAATTCCTAATCCT
1 AAATCCAATTCCAAATCCT
101553 AATCCCATTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.38, C:0.35, G:0.00, T:0.28
Consensus pattern (21 bp):
AAATCCAATTCCAAATCCTCA
Found at i:102820 original size:24 final size:23
Alignment explanation
Indices: 102770--102842 Score: 62
Period size: 23 Copynumber: 3.1 Consensus size: 23
102760 GCTTCAACTT
* *
102770 TTTGGATTGTTTGATTTTGTGAC
1 TTTGGATTGTTTGATGTTGTGAA
102793 TTTGGATTTGTTTGGATGTT-TGAA
1 TTTGGA-TTGTTT-GATGTTGTGAA
*
102817 TTTGTGGATTGATTGAT-TT-TGAA
1 -TT-TGGATTGTTTGATGTTGTGAA
102840 TTT
1 TTT
102843 TTTGGATTTA
Statistics
Matches: 43, Mismatches: 3, Indels: 10
0.77 0.05 0.18
Matches are distributed among these distances:
21 1 0.02
22 2 0.05
23 12 0.28
24 12 0.28
25 12 0.28
26 4 0.09
ACGTcount: A:0.16, C:0.01, G:0.26, T:0.56
Consensus pattern (23 bp):
TTTGGATTGTTTGATGTTGTGAA
Found at i:106941 original size:64 final size:64
Alignment explanation
Indices: 106798--106959 Score: 179
Period size: 64 Copynumber: 2.5 Consensus size: 64
106788 TTGTTGAAGG
* *
106798 TGCATCGATGCATAAGGAGTGCATCGATGCACTCATTTAAATTAAATGAACATCGAATGCCATTT
1 TGCATCGATGCATAAGGTGTGCATCGATGCACTCA-TTAAA-TAAATAAACATCGAATGCCATTT
106863 A
64 A
* * * *
106864 TGCATCAATGCATAAGGTGTGCATCGATGTACCTGC-TTAAA-ATATAAACATCGAATAG-GATT
1 TGCATCGATGCATAAGGTGTGCATCGATGCA-CT-CATTAAATAAATAAACATCGAAT-GCCATT
106926 TA
63 TA
*
106928 TGCACCGATGCAT-AGGTAGTGCATCGATGCAC
1 TGCATCGATGCATAAGGT-GTGCATCGATGCAC
106960 CCGTCAAGGG
Statistics
Matches: 83, Mismatches: 9, Indels: 11
0.81 0.09 0.11
Matches are distributed among these distances:
63 5 0.06
64 41 0.49
65 1 0.01
66 33 0.40
67 2 0.02
68 1 0.01
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.28
Consensus pattern (64 bp):
TGCATCGATGCATAAGGTGTGCATCGATGCACTCATTAAATAAATAAACATCGAATGCCATTTA
Found at i:108324 original size:22 final size:22
Alignment explanation
Indices: 108282--108421 Score: 225
Period size: 22 Copynumber: 6.5 Consensus size: 22
108272 GGGTATATTA
108282 GTCCTTCGGGAC--AT--AGTG
1 GTCCTTCGGGACGTATCCAGTG
108300 GTCCTTCGGGACGTATCCAGTG
1 GTCCTTCGGGACGTATCCAGTG
*
108322 GTCCTTTGGGACGTATCCAGTG
1 GTCCTTCGGGACGTATCCAGTG
108344 GTCCTTCGGGACGTATCCAGTG
1 GTCCTTCGGGACGTATCCAGTG
*
108366 GTCCTTCGGGACGTATCTAGTG
1 GTCCTTCGGGACGTATCCAGTG
*
108388 GTCATTCGGGACGTATCCAGTG
1 GTCCTTCGGGACGTATCCAGTG
108410 GTCCTTCGGGAC
1 GTCCTTCGGGAC
108422 AAATACTGAA
Statistics
Matches: 112, Mismatches: 6, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
18 12 0.11
20 2 0.02
22 98 0.88
ACGTcount: A:0.14, C:0.25, G:0.32, T:0.29
Consensus pattern (22 bp):
GTCCTTCGGGACGTATCCAGTG
Found at i:113153 original size:90 final size:90
Alignment explanation
Indices: 113032--113207 Score: 316
Period size: 90 Copynumber: 2.0 Consensus size: 90
113022 TAATCCCGAA
* * *
113032 TATTTAATTTCAATTAATTAAATATAGATTTAATTAATTTGAAATAATAAAATCCCTAATATGAT
1 TATTAAATTCCAATTAATTAAATATAGATTTAATTAATTTGAAATAATAAAAACCCTAATATGAT
113097 TAGGGTAACTTGGATATAAAATGAT
66 TAGGGTAACTTGGATATAAAATGAT
113122 TATTAAATTCCAATTAATTAAATATAGATTTAATTAATTTGAAATAATAAAAACCCTAATATGAT
1 TATTAAATTCCAATTAATTAAATATAGATTTAATTAATTTGAAATAATAAAAACCCTAATATGAT
*
113187 TAGGGTAACTTGGCTATAAAA
66 TAGGGTAACTTGGATATAAAA
113208 AGGTGTGTTA
Statistics
Matches: 82, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
90 82 1.00
ACGTcount: A:0.45, C:0.07, G:0.10, T:0.38
Consensus pattern (90 bp):
TATTAAATTCCAATTAATTAAATATAGATTTAATTAATTTGAAATAATAAAAACCCTAATATGAT
TAGGGTAACTTGGATATAAAATGAT
Done.