Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01001965.1 Hibiscus syriacus cultivar Beakdansim tig00003969_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 250570
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.33
File 2 of 2
Found at i:195530 original size:31 final size:31
Alignment explanation
Indices: 195492--195567 Score: 98
Period size: 31 Copynumber: 2.5 Consensus size: 31
195482 ATTTCAAAAG
* * **
195492 TAACAAAATAATTATTAACGTTATCTACTTA
1 TAACAAAATAATCACTAACGTTATAGACTTA
* *
195523 TAACAAAATGATCACTAACGTTATAGACTTG
1 TAACAAAATAATCACTAACGTTATAGACTTA
195554 TAACAAAATAATCA
1 TAACAAAATAATCA
195568 TTTTACCGCA
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
31 38 1.00
ACGTcount: A:0.47, C:0.14, G:0.07, T:0.32
Consensus pattern (31 bp):
TAACAAAATAATCACTAACGTTATAGACTTA
Found at i:196878 original size:31 final size:31
Alignment explanation
Indices: 196843--196914 Score: 81
Period size: 31 Copynumber: 2.3 Consensus size: 31
196833 ACGAGAGTGG
* * *
196843 AGTGATTATTTTATCACAAGTCGATAATATT
1 AGTGACTATTTTATCACAAATCGATAAAATT
* * *
196874 AGTGACCATTTTGTTACAAATCGATAAAATT
1 AGTGACTATTTTATCACAAATCGATAAAATT
*
196905 AATGACTATT
1 AGTGACTATT
196915 GGTGTAGTTT
Statistics
Matches: 33, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.38, C:0.11, G:0.12, T:0.39
Consensus pattern (31 bp):
AGTGACTATTTTATCACAAATCGATAAAATT
Found at i:198025 original size:20 final size:20
Alignment explanation
Indices: 198000--198064 Score: 112
Period size: 20 Copynumber: 3.2 Consensus size: 20
197990 TTCCAATTTT
198000 GCAACGCGAATATGTAAATC
1 GCAACGCGAATATGTAAATC
198020 GCAACGCGAATATGTAAATC
1 GCAACGCGAATATGTAAATC
* *
198040 GCAACGCAAATTTGTAAATC
1 GCAACGCGAATATGTAAATC
198060 GCAAC
1 GCAAC
198065 ATAGAAGTTA
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.40, C:0.22, G:0.18, T:0.20
Consensus pattern (20 bp):
GCAACGCGAATATGTAAATC
Found at i:198097 original size:20 final size:20
Alignment explanation
Indices: 198069--198130 Score: 70
Period size: 20 Copynumber: 3.1 Consensus size: 20
198059 CGCAACATAG
* *
198069 AAGTTAAATTCGCAACGCGA
1 AAGTCAAATTCGTAACGCGA
* * * *
198089 TAGTCAAATTTGTAACACAA
1 AAGTCAAATTCGTAACGCGA
198109 AAGTCAAATTCGTAACGCGA
1 AAGTCAAATTCGTAACGCGA
198129 AA
1 AA
198131 CACAATATTA
Statistics
Matches: 32, Mismatches: 10, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.44, C:0.18, G:0.16, T:0.23
Consensus pattern (20 bp):
AAGTCAAATTCGTAACGCGA
Found at i:198683 original size:14 final size:14
Alignment explanation
Indices: 198684--198717 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
198674 TGCGATTTTC
*
198684 ATTTTCGCGTTGTG
1 ATTTTCGCGTTGCG
*
198698 ATTTTCTCGTTGCG
1 ATTTTCGCGTTGCG
198712 ATTTTC
1 ATTTTC
198718 ATTTTCGCGT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.09, C:0.18, G:0.21, T:0.53
Consensus pattern (14 bp):
ATTTTCGCGTTGCG
Found at i:198691 original size:20 final size:20
Alignment explanation
Indices: 198666--198732 Score: 74
Period size: 20 Copynumber: 3.6 Consensus size: 20
198656 GCGGTTTTAG
198666 TTTCGCGTTGCGATTTTCAT
1 TTTCGCGTTGCGATTTTCAT
*
198686 TTTCGCGTTGTGATTTTC--
1 TTTCGCGTTGCGATTTTCAT
198704 --T--CGTTGCGATTTTCAT
1 TTTCGCGTTGCGATTTTCAT
*
198720 TTTCGCGTCGCGA
1 TTTCGCGTTGCGA
198733 ATTTAAGTTT
Statistics
Matches: 38, Mismatches: 3, Indels: 12
0.72 0.06 0.23
Matches are distributed among these distances:
14 12 0.32
16 1 0.03
18 1 0.03
20 24 0.63
ACGTcount: A:0.09, C:0.21, G:0.22, T:0.48
Consensus pattern (20 bp):
TTTCGCGTTGCGATTTTCAT
Found at i:200435 original size:42 final size:41
Alignment explanation
Indices: 200388--200487 Score: 103
Period size: 42 Copynumber: 2.4 Consensus size: 41
200378 GTTAGGGGAG
* *
200388 TTACGTGATGAGGTCGGTGCTTTGCGTCATGAGG-TCGGTACT
1 TTACGTGATGAGGT-GGTGCATGGCGTCATGAGGTTCGGT-CT
* ** *
200430 TTACGTGAAGATAATGGTGCATGGCGTGATGAGGTTCGGTCT
1 TTACGTGATGA-GGTGGTGCATGGCGTCATGAGGTTCGGTCT
*
200472 TTACGTGGTGAGGTGG
1 TTACGTGATGAGGTGG
200488 ATTTTTTACG
Statistics
Matches: 46, Mismatches: 10, Indels: 5
0.75 0.16 0.08
Matches are distributed among these distances:
41 3 0.07
42 37 0.80
43 6 0.13
ACGTcount: A:0.17, C:0.13, G:0.38, T:0.32
Consensus pattern (41 bp):
TTACGTGATGAGGTGGTGCATGGCGTCATGAGGTTCGGTCT
Found at i:200891 original size:42 final size:42
Alignment explanation
Indices: 200840--200942 Score: 120
Period size: 42 Copynumber: 2.5 Consensus size: 42
200830 GCCCGATGCA
* *
200840 CCTATCATCATTCAAGAGGCGCCTCCTATC-GTTCAAGAGGCC
1 CCTATCATCATTCAAGAGGCCCCTCCCA-CAGTTCAAGAGGCC
* * *
200882 CCTCTCATCA-TCGAAAAAGCCCCTCCCACAGTTCAAGAGGCC
1 CCTATCATCATTC-AAGAGGCCCCTCCCACAGTTCAAGAGGCC
*
200924 CCTATCATCGTTCAAGAGG
1 CCTATCATCATTCAAGAGG
200943 TCCCGCTCGC
Statistics
Matches: 49, Mismatches: 9, Indels: 6
0.77 0.14 0.09
Matches are distributed among these distances:
41 3 0.06
42 44 0.90
43 2 0.04
ACGTcount: A:0.26, C:0.35, G:0.17, T:0.21
Consensus pattern (42 bp):
CCTATCATCATTCAAGAGGCCCCTCCCACAGTTCAAGAGGCC
Found at i:200924 original size:21 final size:22
Alignment explanation
Indices: 200845--200942 Score: 82
Period size: 21 Copynumber: 4.7 Consensus size: 22
200835 ATGCACCTAT
*
200845 CATCA-TTCAAGAGGCGCCTCC
1 CATCAGTTCAAGAGGCCCCTCC
* *
200866 TATC-GTTCAAGAGGCCCCTCT
1 CATCAGTTCAAGAGGCCCCTCC
* *
200887 CATCA--TCGAAAAAGCCCCTCC
1 CATCAGTTC-AAGAGGCCCCTCC
**
200908 CA-CAGTTCAAGAGGCCCCTAT
1 CATCAGTTCAAGAGGCCCCTCC
200929 CATC-GTTCAAGAGG
1 CATCAGTTCAAGAGG
200943 TCCCGCTCGC
Statistics
Matches: 60, Mismatches: 11, Indels: 12
0.72 0.13 0.14
Matches are distributed among these distances:
20 4 0.07
21 53 0.88
22 3 0.05
ACGTcount: A:0.27, C:0.35, G:0.18, T:0.20
Consensus pattern (22 bp):
CATCAGTTCAAGAGGCCCCTCC
Found at i:202328 original size:69 final size:66
Alignment explanation
Indices: 202242--202402 Score: 213
Period size: 66 Copynumber: 2.4 Consensus size: 66
202232 TGGGGTACAC
202242 ATTTTTTGCTTGTTTAATTGAATTT-TACATTGAAAGTTGATTTGTTTAA-TTGATGAGGAAATA
1 ATTTTTTGCTTGTTTAATTGAATTTGT--A---AAAGTTGATTTGTTTAATTTGATGAGGAAATA
202305 AGAATT
61 AGAATT
* * *
202311 ATTTGTTGCTTGTTTAATTG-ATTTGTAAAAGTTGATTTGTTTAATTTGATGTGTAAATAAGAAT
1 ATTTTTTGCTTGTTTAATTGAATTTGTAAAAGTTGATTTGTTTAATTTGATGAGGAAATAAGAAT
202375 T
66 T
202376 ATTTTTTTGCTTGTTTAATTG-ATTTGT
1 A-TTTTTTGCTTGTTTAATTGAATTTGT
202403 TGTTTTAAAT
Statistics
Matches: 85, Mismatches: 4, Indels: 9
0.87 0.04 0.09
Matches are distributed among these distances:
64 17 0.20
65 19 0.22
66 24 0.28
67 1 0.01
68 4 0.05
69 20 0.24
ACGTcount: A:0.28, C:0.02, G:0.17, T:0.52
Consensus pattern (66 bp):
ATTTTTTGCTTGTTTAATTGAATTTGTAAAAGTTGATTTGTTTAATTTGATGAGGAAATAAGAAT
T
Found at i:202353 original size:64 final size:66
Alignment explanation
Indices: 202274--202402 Score: 217
Period size: 66 Copynumber: 2.0 Consensus size: 66
202264 TTTTACATTG
202274 AAAGTTGATTTGTTTAA-TTGATGAGGAAATAAGAATTA-TTTGTTGCTTGTTTAATTGATTTGT
1 AAAGTTGATTTGTTTAATTTGATGAGGAAATAAGAATTATTTTGTTGCTTGTTTAATTGATTTGT
202337 A
66 A
* * *
202338 AAAGTTGATTTGTTTAATTTGATGTGTAAATAAGAATTATTTTTTTGCTTGTTTAATTGATTTGT
1 AAAGTTGATTTGTTTAATTTGATGAGGAAATAAGAATTATTTTGTTGCTTGTTTAATTGATTTGT
202403 TGTTTTAAAT
Statistics
Matches: 60, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
64 17 0.28
65 19 0.32
66 24 0.40
ACGTcount: A:0.29, C:0.02, G:0.19, T:0.50
Consensus pattern (66 bp):
AAAGTTGATTTGTTTAATTTGATGAGGAAATAAGAATTATTTTGTTGCTTGTTTAATTGATTTGT
A
Found at i:202482 original size:20 final size:20
Alignment explanation
Indices: 202457--202525 Score: 102
Period size: 20 Copynumber: 3.5 Consensus size: 20
202447 GTTGAAGGTA
*
202457 CAAATTCGCAACCCGAAAGT
1 CAAATTCGCAACGCGAAAGT
* * *
202477 CAAATTCACAATGCGAAAGA
1 CAAATTCGCAACGCGAAAGT
202497 CAAATTCGCAACGCGAAAGT
1 CAAATTCGCAACGCGAAAGT
202517 CAAATTCGC
1 CAAATTCGC
202526 GTTGCGATTT
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.42, C:0.26, G:0.16, T:0.16
Consensus pattern (20 bp):
CAAATTCGCAACGCGAAAGT
Found at i:202897 original size:18 final size:18
Alignment explanation
Indices: 202876--202911 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
202866 AAGCCGGTTG
*
202876 TGATTGTGATTTTGATTT
1 TGATTGCGATTTTGATTT
202894 TGATTGCGATTTTGATTT
1 TGATTGCGATTTTGATTT
202912 CCTTTTTCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.17, C:0.03, G:0.22, T:0.58
Consensus pattern (18 bp):
TGATTGCGATTTTGATTT
Found at i:206003 original size:14 final size:15
Alignment explanation
Indices: 205967--206004 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
205957 GAAATCATTG
205967 AAAAATTATATAGAA
1 AAAAATTATATAGAA
*
205982 ATAAAATTATGTA-AA
1 A-AAAATTATATAGAA
205997 AAAAATTA
1 AAAAATTA
206005 GAGATGGGGA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
14 7 0.33
15 4 0.19
16 10 0.48
ACGTcount: A:0.66, C:0.00, G:0.05, T:0.29
Consensus pattern (15 bp):
AAAAATTATATAGAA
Found at i:206041 original size:22 final size:21
Alignment explanation
Indices: 206012--206052 Score: 64
Period size: 22 Copynumber: 1.9 Consensus size: 21
206002 TTAGAGATGG
*
206012 GGAAGGATGTCGTTGGATATA
1 GGAAGGATGTCGTCGGATATA
206033 GGAACGGATGTCGTCGGATA
1 GGAA-GGATGTCGTCGGATA
206053 GAGTGATAGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 4 0.22
22 14 0.78
ACGTcount: A:0.27, C:0.10, G:0.39, T:0.24
Consensus pattern (21 bp):
GGAAGGATGTCGTCGGATATA
Found at i:206184 original size:19 final size:18
Alignment explanation
Indices: 206141--206187 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
206131 CAAAACATTT
206141 GTGTTGCGAAACTAAAAC
1 GTGTTGCGAAACTAAAAC
* * *
206159 CTGTTGCGAAATTAAATTC
1 GTGTTGCGAAACTAAA-AC
206178 GTGTTGCGAA
1 GTGTTGCGAA
206188 TTCGAAAATC
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
18 14 0.58
19 10 0.42
ACGTcount: A:0.32, C:0.15, G:0.23, T:0.30
Consensus pattern (18 bp):
GTGTTGCGAAACTAAAAC
Found at i:206221 original size:19 final size:20
Alignment explanation
Indices: 206161--206251 Score: 89
Period size: 20 Copynumber: 4.7 Consensus size: 20
206151 ACTAAAACCT
* *
206161 GTTGCGAAATT-AAATTCGT
1 GTTGCGAATTTGAAATTCGA
* * *
206180 GTTGCGAATTCGAAAATCTA
1 GTTGCGAATTTGAAATTCGA
206200 GTTGCGAATTTGAAATTC-A
1 GTTGCGAATTTGAAATTCGA
* *
206219 GTTGCGAATTTG-ACTATCGC
1 GTTGCGAATTTGAAAT-TCGA
206239 GTTGCGAATTTGA
1 GTTGCGAATTTGA
206252 CTTCTGTGTT
Statistics
Matches: 59, Mismatches: 9, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
18 2 0.03
19 24 0.41
20 33 0.56
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.35
Consensus pattern (20 bp):
GTTGCGAATTTGAAATTCGA
Found at i:206223 original size:39 final size:40
Alignment explanation
Indices: 206161--206251 Score: 105
Period size: 39 Copynumber: 2.3 Consensus size: 40
206151 ACTAAAACCT
* * *
206161 GTTGCGAAATT-AAATTCGTGTTGCGAATTCGAAAATCTA
1 GTTGCGAATTTGAAATTCGAGTTGCGAATTCGAAAATCGA
* ** *
206200 GTTGCGAATTTGAAATTC-AGTTGCGAATTTGACTATCGC
1 GTTGCGAATTTGAAATTCGAGTTGCGAATTCGAAAATCGA
206239 GTTGCGAATTTGA
1 GTTGCGAATTTGA
206252 CTTCTGTGTT
Statistics
Matches: 44, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
39 38 0.86
40 6 0.14
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.35
Consensus pattern (40 bp):
GTTGCGAATTTGAAATTCGAGTTGCGAATTCGAAAATCGA
Found at i:206244 original size:20 final size:20
Alignment explanation
Indices: 206219--206282 Score: 71
Period size: 20 Copynumber: 3.2 Consensus size: 20
206209 TTGAAATTCA
206219 GTTGCGAATTTGACTATCGC
1 GTTGCGAATTTGACTATCGC
*
206239 GTTGCGAATTTGACT-TCTGT
1 GTTGCGAATTTGACTATC-GC
206259 GTTGCG-ATTT-ACATATTCGC
1 GTTGCGAATTTGAC-TA-TCGC
206279 GTTG
1 GTTG
206283 TAAAATTGGA
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
18 2 0.05
19 7 0.18
20 27 0.71
21 2 0.05
ACGTcount: A:0.17, C:0.17, G:0.25, T:0.41
Consensus pattern (20 bp):
GTTGCGAATTTGACTATCGC
Found at i:217248 original size:27 final size:27
Alignment explanation
Indices: 217201--217254 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
217191 GGGGCGTGCA
*
217201 TTCCCCCTCCCGCCCCGATTTCCCGCC
1 TTCCCCCTCCCGCCCCAATTTCCCGCC
* *
217228 TTCCCCCTCCCGCCCTAATTTTCCGCC
1 TTCCCCCTCCCGCCCCAATTTCCCGCC
217255 AAATTATCCC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.06, C:0.59, G:0.09, T:0.26
Consensus pattern (27 bp):
TTCCCCCTCCCGCCCCAATTTCCCGCC
Found at i:217395 original size:8 final size:8
Alignment explanation
Indices: 217382--217466 Score: 56
Period size: 8 Copynumber: 11.2 Consensus size: 8
217372 GACTTTATAA
217382 TTTATTAT
1 TTTATTAT
217390 TTTATTCA-
1 TTTATT-AT
* *
217398 TTAATTTT
1 TTTATTAT
217406 TTTATTAT
1 TTTATTAT
* * *
217414 TTAAGTAA
1 TTTATTAT
*
217422 TTAATTAT
1 TTTATTAT
217430 TTTATTA-
1 TTTATTAT
217437 TTT-TTA-
1 TTTATTAT
217443 TTT-TTAT
1 TTTATTAT
217450 TTT-TTAT
1 TTTATTAT
*
217457 TTGATTAT
1 TTTATTAT
217465 TT
1 TT
217467 AATTGTAAAC
Statistics
Matches: 62, Mismatches: 11, Indels: 8
0.77 0.14 0.10
Matches are distributed among these distances:
6 9 0.15
7 12 0.19
8 40 0.65
9 1 0.02
ACGTcount: A:0.26, C:0.01, G:0.02, T:0.71
Consensus pattern (8 bp):
TTTATTAT
Found at i:217414 original size:24 final size:24
Alignment explanation
Indices: 217382--217440 Score: 82
Period size: 24 Copynumber: 2.5 Consensus size: 24
217372 GACTTTATAA
* * *
217382 TTTATTATTTTATTCATTAATTTT
1 TTTATTATTTTAGTAATTAATTAT
*
217406 TTTATTATTTAAGTAATTAATTAT
1 TTTATTATTTTAGTAATTAATTAT
217430 TTTATTATTTT
1 TTTATTATTTT
217441 TATTTTTATT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.68
Consensus pattern (24 bp):
TTTATTATTTTAGTAATTAATTAT
Found at i:217678 original size:23 final size:23
Alignment explanation
Indices: 217631--217678 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
217621 CGATTATATA
* *
217631 TTATTTAAATTATTATAATTTAT
1 TTATTTAAATTATTATAAATAAT
217654 TTATTTAAATTTATT-TAAATAAT
1 TTATTTAAA-TTATTATAAATAAT
217677 TT
1 TT
217679 TGAAATAATA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
23 17 0.77
24 5 0.23
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (23 bp):
TTATTTAAATTATTATAAATAAT
Found at i:221208 original size:23 final size:23
Alignment explanation
Indices: 221155--221202 Score: 87
Period size: 23 Copynumber: 2.1 Consensus size: 23
221145 AGAATAATGG
*
221155 AGGAAGAAGAAAATGTTTTTCTT
1 AGGAAAAAGAAAATGTTTTTCTT
221178 AGGAAAAAGAAAATGTTTTTCTT
1 AGGAAAAAGAAAATGTTTTTCTT
221201 AG
1 AG
221203 ACAAAAATGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.42, C:0.04, G:0.21, T:0.33
Consensus pattern (23 bp):
AGGAAAAAGAAAATGTTTTTCTT
Found at i:221208 original size:24 final size:23
Alignment explanation
Indices: 221161--221209 Score: 80
Period size: 23 Copynumber: 2.1 Consensus size: 23
221151 ATGGAGGAAG
*
221161 AAGAAAATGTTTTTCTTAGGAAA
1 AAGAAAATGTTTTTCTTAGCAAA
221184 AAGAAAATGTTTTTCTTAGACAAA
1 AAGAAAATGTTTTTCTTAG-CAAA
221208 AA
1 AA
221210 TGGTTTGGAA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
23 19 0.79
24 5 0.21
ACGTcount: A:0.47, C:0.06, G:0.14, T:0.33
Consensus pattern (23 bp):
AAGAAAATGTTTTTCTTAGCAAA
Found at i:222697 original size:20 final size:20
Alignment explanation
Indices: 222603--222971 Score: 449
Period size: 20 Copynumber: 18.4 Consensus size: 20
222593 GATTTTCCAT
* ** *
222603 AATCGCAACGCGAATATGAA
1 AATCGCAACGCGTATCCGTA
* *
222623 AATCGCAACGCG-AACACATA
1 AATCGCAACGCGTATC-CGTA
222643 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
*
222663 AATCGCAACGTGTATCCGTA
1 AATCGCAACGCGTATCCGTA
**
222683 AATCGCAACGCGTATGGGTA
1 AATCGCAACGCGTATCCGTA
*
222703 AATCGCAATGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
*
222723 TATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
222743 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
* *
222763 AACCGCAACGTGTATCCGTA
1 AATCGCAACGCGTATCCGTA
222783 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
*
222803 AATCGCAATGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
222823 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
*
222843 AATCGCAACG-ATAATCCGTA
1 AATCGCAACGCGT-ATCCGTA
222863 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
*
222883 AATCGCAACG-ATAATCCGTA
1 AATCGCAACGCGT-ATCCGTA
* * *
222903 AATCGCAACGAGAATCTGTA
1 AATCGCAACGCGTATCCGTA
* *
222923 AATCGCAACG-ATAATCCGAA
1 AATCGCAACGCGT-ATCCGTA
* * *
222943 AATCGCAACGAGAATCTGTA
1 AATCGCAACGCGTATCCGTA
*
222963 AATCACAAC
1 AATCGCAAC
222972 ACTGAAATTT
Statistics
Matches: 303, Mismatches: 38, Indels: 16
0.85 0.11 0.04
Matches are distributed among these distances:
19 3 0.01
20 297 0.98
21 3 0.01
ACGTcount: A:0.35, C:0.26, G:0.19, T:0.20
Consensus pattern (20 bp):
AATCGCAACGCGTATCCGTA
Found at i:223682 original size:24 final size:24
Alignment explanation
Indices: 223643--223689 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
223633 AAATTTGGTC
223643 TTGGTCAATATCCGGACTTTGATA
1 TTGGTCAATATCCGGACTTTGATA
*
223667 TTGGTCAATA-CACGGATTTTGAT
1 TTGGTCAATATC-CGGACTTTGAT
223690 GATGTTTCAG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 1 0.05
24 20 0.95
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.38
Consensus pattern (24 bp):
TTGGTCAATATCCGGACTTTGATA
Found at i:223881 original size:12 final size:12
Alignment explanation
Indices: 223864--223888 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
223854 ATATAATCCT
223864 GAAGAAGAAAAA
1 GAAGAAGAAAAA
223876 GAAGAAGAAAAA
1 GAAGAAGAAAAA
223888 G
1 G
223889 TCCCCGAAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (12 bp):
GAAGAAGAAAAA
Found at i:226217 original size:19 final size:19
Alignment explanation
Indices: 226195--226629 Score: 570
Period size: 19 Copynumber: 24.4 Consensus size: 19
226185 CGGAAAATAC
*
226195 AATCGCAACGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
226214 AATCCCAA--C---ATGAA
1 AATCGCAATGCGAAATGAA
226228 AATCGCAATGCGGAAATGAA
1 AATCGCAATGC-GAAATGAA
*
226248 AATCGCAA--CG--A-GAG
1 AATCGCAATGCGAAATGAA
226262 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
226281 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
226300 AATCGCAACGCG--A-G--
1 AATCGCAATGCGAAATGAA
226314 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
226333 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
226352 AATCGCAATACGAAATGAA
1 AATCGCAATGCGAAATGAA
226371 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
226390 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
226409 AATCGCAA--CG--A-GAG
1 AATCGCAATGCGAAATGAA
226423 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
226442 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
226461 AATCGCAACGCG--A-G--
1 AATCGCAATGCGAAATGAA
226475 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
226494 AATCGCAATGCGAAATTAA
1 AATCGCAATGCGAAATGAA
*
226513 AATCGCAATACGAAATGAA
1 AATCGCAATGCGAAATGAA
226532 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
226551 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
226570 AATCGCAA--CGAAA-G--
1 AATCGCAATGCGAAATGAA
226584 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
226603 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
226622 AATCGCAA
1 AATCGCAA
226630 CGAGATAATC
Statistics
Matches: 369, Mismatches: 16, Indels: 62
0.83 0.04 0.14
Matches are distributed among these distances:
14 62 0.17
15 2 0.01
16 15 0.04
17 14 0.04
18 3 0.01
19 260 0.70
20 13 0.04
ACGTcount: A:0.47, C:0.18, G:0.21, T:0.14
Consensus pattern (19 bp):
AATCGCAATGCGAAATGAA
Found at i:226456 original size:161 final size:161
Alignment explanation
Indices: 226223--226651 Score: 813
Period size: 161 Copynumber: 2.7 Consensus size: 161
226213 AAATCCCAAC
226223 ATGAAAATCGCAATGCGGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCA
1 ATGAAAATCGCAATGC-GAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCA
226288 ATGCGAAATGAAAATCGCAACGCGAGAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAA
65 ATGCGAAATGAAAATCGCAACGCGAGAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAA
226353 ATCGCAATACGAAATGAAAATCGCAATGCGAA
130 ATCGCAATACGAAATGAAAATCGCAATGCGAA
226385 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAA
1 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAA
*
226450 TGCGAAATGAAAATCGCAACGCGAGAATCGCAATGCGAAATGAAAATCGCAATGCGAAATTAAAA
66 TGCGAAATGAAAATCGCAACGCGAGAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAA
226515 TCGCAATACGAAATGAAAATCGCAATGCGAA
131 TCGCAATACGAAATGAAAATCGCAATGCGAA
*
226546 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAAAGAATCGCAATGCGAAATGAAAATCGCAA
1 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAA
* *
226611 TGCGAAATGAAAATCGCAACGAGATAATCGCAATGCGAAAT
66 TGCGAAATGAAAATCGCAACGCGAGAATCGCAATGCGAAAT
226652 TATAAACGCA
Statistics
Matches: 263, Mismatches: 4, Indels: 1
0.98 0.01 0.00
Matches are distributed among these distances:
161 247 0.94
162 16 0.06
ACGTcount: A:0.47, C:0.17, G:0.21, T:0.15
Consensus pattern (161 bp):
ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAA
TGCGAAATGAAAATCGCAACGCGAGAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAA
TCGCAATACGAAATGAAAATCGCAATGCGAA
Found at i:226667 original size:52 final size:52
Alignment explanation
Indices: 226223--226651 Score: 696
Period size: 52 Copynumber: 8.0 Consensus size: 52
226213 AAATCCCAAC
226223 ATGAAAATCGCAATGCGGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
1 ATGAAAATCGCAATGC-GAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
*
226276 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGCGAGAATCGCAATGCGAA
1 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
*
226328 ATGAAAATCGCAATGCGAAATGAAAATCGCAATACGAAATGAAAATCGCAATGCGAA
1 ATGAAAATCGCAATGCGAAATGAAAATCGC-A-ACG--A-GAGAATCGCAATGCGAA
226385 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
1 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
*
226437 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGCGAGAATCGCAATGCGAA
1 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
* *
226489 ATGAAAATCGCAATGCGAAATTAAAATCGCAATACGAAATGAAAATCGCAATGCGAA
1 ATGAAAATCGCAATGCGAAATGAAAATCGC-A-ACG--A-GAGAATCGCAATGCGAA
*
226546 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAAAGAATCGCAATGCGAA
1 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
*
226598 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGATAATCGCAATGCGAA
1 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
226650 AT
1 AT
226652 TATAAACGCA
Statistics
Matches: 353, Mismatches: 13, Indels: 21
0.91 0.03 0.05
Matches are distributed among these distances:
52 228 0.65
53 20 0.06
54 6 0.02
55 6 0.02
56 2 0.01
57 91 0.26
ACGTcount: A:0.47, C:0.17, G:0.21, T:0.15
Consensus pattern (52 bp):
ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
Found at i:226767 original size:19 final size:19
Alignment explanation
Indices: 226658--226759 Score: 151
Period size: 19 Copynumber: 5.6 Consensus size: 19
226648 AAATTATAAA
226658 CGCATTGCGATTTTCATTT
1 CGCATTGCGATTTTCATTT
226677 CCGCATTGCGATTTTCATTT
1 -CGCATTGCGATTTTCATTT
*
226697 CGCATTGCGA--TTC-TCT
1 CGCATTGCGATTTTCATTT
226713 CG--TTGCGATTTTCATTT
1 CGCATTGCGATTTTCATTT
226730 CGCATTGCGATTTTCATTT
1 CGCATTGCGATTTTCATTT
226749 CGCATTGCGAT
1 CGCATTGCGAT
226760 AGTCATTTTT
Statistics
Matches: 75, Mismatches: 2, Indels: 11
0.85 0.02 0.12
Matches are distributed among these distances:
14 6 0.08
16 7 0.09
17 7 0.09
19 36 0.48
20 19 0.25
ACGTcount: A:0.15, C:0.24, G:0.18, T:0.44
Consensus pattern (19 bp):
CGCATTGCGATTTTCATTT
Found at i:226885 original size:14 final size:14
Alignment explanation
Indices: 226866--226902 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
226856 CATCAATTAC
226866 ACAAATCAACTTTT
1 ACAAATCAACTTTT
*
226880 ACAAATCATCTTTT
1 ACAAATCAACTTTT
226894 ACAAATCAA
1 ACAAATCAA
226903 TTAAACAATC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.46, C:0.22, G:0.00, T:0.32
Consensus pattern (14 bp):
ACAAATCAACTTTT
Found at i:226914 original size:12 final size:12
Alignment explanation
Indices: 226897--226969 Score: 53
Period size: 12 Copynumber: 6.0 Consensus size: 12
226887 ATCTTTTACA
226897 AATCAATTAAAC
1 AATCAATTAAAC
*
226909 AATCAA--AAATTG
1 AATCAATTAAA--C
**
226921 AATCAACTTTTAC
1 AATCAA-TTAAAC
226934 AAATCAATTAAAC
1 A-ATCAATTAAAC
*
226947 AATCAA-AAAAC
1 AATCAATTAAAC
226958 AATCAATTAAAC
1 AATCAATTAAAC
226970 TATTGAATCA
Statistics
Matches: 46, Mismatches: 8, Indels: 14
0.68 0.12 0.21
Matches are distributed among these distances:
10 3 0.07
11 10 0.22
12 21 0.46
13 6 0.13
14 5 0.11
15 1 0.02
ACGTcount: A:0.58, C:0.16, G:0.01, T:0.25
Consensus pattern (12 bp):
AATCAATTAAAC
Found at i:226931 original size:38 final size:38
Alignment explanation
Indices: 226883--226955 Score: 137
Period size: 38 Copynumber: 1.9 Consensus size: 38
226873 AACTTTTACA
*
226883 AATCATCTTTTACAAATCAATTAAACAATCAAAAATTG
1 AATCAACTTTTACAAATCAATTAAACAATCAAAAATTG
226921 AATCAACTTTTACAAATCAATTAAACAATCAAAAA
1 AATCAACTTTTACAAATCAATTAAACAATCAAAAA
226956 ACAATCAATT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 34 1.00
ACGTcount: A:0.53, C:0.16, G:0.01, T:0.29
Consensus pattern (38 bp):
AATCAACTTTTACAAATCAATTAAACAATCAAAAATTG
Found at i:228813 original size:19 final size:19
Alignment explanation
Indices: 228773--228871 Score: 91
Period size: 19 Copynumber: 5.4 Consensus size: 19
228763 TAGTTTACTT
* *
228773 TCGCAACACGAAACTTAAAA
1 TCGCAACGCGAAAC-CAAAA
228793 TCGCAACGCGAAACCAAAA
1 TCGCAACGCGAAACCAAAA
**
228812 TCGCAACGCGAAATGAAAA
1 TCGCAACGCGAAACCAAAA
*
228831 TCGCAA--CG--A-CAGAA
1 TCGCAACGCGAAACCAAAA
**
228845 TCGCAACGCGAAATGAAAA
1 TCGCAACGCGAAACCAAAA
228864 TCGCAACG
1 TCGCAACG
228872 AAAGAATCGC
Statistics
Matches: 66, Mismatches: 8, Indels: 11
0.78 0.09 0.13
Matches are distributed among these distances:
14 9 0.14
15 1 0.02
16 2 0.03
17 2 0.03
18 1 0.02
19 38 0.58
20 13 0.20
ACGTcount: A:0.45, C:0.26, G:0.18, T:0.10
Consensus pattern (19 bp):
TCGCAACGCGAAACCAAAA
Found at i:228848 original size:14 final size:14
Alignment explanation
Indices: 228829--228885 Score: 60
Period size: 14 Copynumber: 3.7 Consensus size: 14
228819 GCGAAATGAA
*
228829 AATCGCAACGACAG
1 AATCGCAACGAAAG
228843 AATCGCAACGCGAAATG
1 AATCGCAA--CGAAA-G
228860 AAAATCGCAACGAAAG
1 --AATCGCAACGAAAG
228876 AATCGCAACG
1 AATCGCAACG
228886 CGAAATGAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 10
0.77 0.02 0.21
Matches are distributed among these distances:
14 18 0.49
16 5 0.14
17 6 0.16
19 8 0.22
ACGTcount: A:0.46, C:0.25, G:0.21, T:0.09
Consensus pattern (14 bp):
AATCGCAACGAAAG
Found at i:228852 original size:33 final size:33
Alignment explanation
Indices: 228810--228901 Score: 168
Period size: 33 Copynumber: 2.8 Consensus size: 33
228800 GCGAAACCAA
*
228810 AATCGCAACGCGAAATGAAAATCGCAACGACAG
1 AATCGCAACGCGAAATGAAAATCGCAACGAAAG
228843 AATCGCAACGCGAAATGAAAATCGCAACGAAAG
1 AATCGCAACGCGAAATGAAAATCGCAACGAAAG
228876 AATCGCAACGCGAAATG-AAATCGCAA
1 AATCGCAACGCGAAATGAAAATCGCAA
228902 TGCGATTTTG
Statistics
Matches: 58, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
32 9 0.16
33 49 0.84
ACGTcount: A:0.47, C:0.23, G:0.21, T:0.10
Consensus pattern (33 bp):
AATCGCAACGCGAAATGAAAATCGCAACGAAAG
Found at i:228924 original size:19 final size:19
Alignment explanation
Indices: 228902--229030 Score: 125
Period size: 19 Copynumber: 7.3 Consensus size: 19
228892 GAAATCGCAA
228902 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTGGTTTCGCGT
*
228921 TGCGATCTT-G--T--CGT
1 TGCGATTTTGGTTTCGCGT
228935 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTGGTTTCGCGT
*
228954 TGCGATTCT-G--T--CGT
1 TGCGATTTTGGTTTCGCGT
**
228968 TGCGATTTTCATTTCGCGT
1 TGCGATTTTGGTTTCGCGT
228987 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTGGTTTCGCGT
* *
229006 TGCGATTTTAAGTTTCGTGT
1 TGCGATTTT-GGTTTCGCGT
229026 TGCGA
1 TGCGA
229031 AAGTAAACTA
Statistics
Matches: 90, Mismatches: 9, Indels: 21
0.75 0.08 0.17
Matches are distributed among these distances:
14 22 0.24
15 1 0.01
16 2 0.02
17 2 0.02
18 2 0.02
19 48 0.53
20 13 0.14
ACGTcount: A:0.09, C:0.17, G:0.29, T:0.46
Consensus pattern (19 bp):
TGCGATTTTGGTTTCGCGT
Found at i:228944 original size:33 final size:33
Alignment explanation
Indices: 228902--228993 Score: 150
Period size: 33 Copynumber: 2.8 Consensus size: 33
228892 GAAATCGCAA
228902 TGCGATTTTGGTTTCGCGTTGCGA-TCTTGTCGT
1 TGCGATTTTGGTTTCGCGTTGCGATTC-TGTCGT
228935 TGCGATTTTGGTTTCGCGTTGCGATTCTGTCGT
1 TGCGATTTTGGTTTCGCGTTGCGATTCTGTCGT
**
228968 TGCGATTTTCATTTCGCGTTGCGATT
1 TGCGATTTTGGTTTCGCGTTGCGATT
228994 TTGGTTTCGC
Statistics
Matches: 56, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
33 54 0.96
34 2 0.04
ACGTcount: A:0.08, C:0.18, G:0.28, T:0.46
Consensus pattern (33 bp):
TGCGATTTTGGTTTCGCGTTGCGATTCTGTCGT
Found at i:229364 original size:92 final size:93
Alignment explanation
Indices: 229074--229453 Score: 735
Period size: 93 Copynumber: 4.1 Consensus size: 93
229064 TTGAATGGAT
229074 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
229139 AGTTTAGCAGAATTGGCAGCAACCGAAC
66 AGTTTAGCAGAATTGGCAGCAACCGAAC
229167 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
229232 AGTTTAGCAGAATTGGCAGCAACCGAAC
66 AGTTTAGCAGAATTGGCAGCAACCGAAC
229260 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATA-TATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
229324 AGTTTAGCAGAATTGGCAGCAACCGAAC
66 AGTTTAGCAGAATTGGCAGCAACCGAAC
*
229352 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATATTATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
*
229417 AGTTTAGCAGAATTGGCAGCAACCGAAT
66 AGTTTAGCAGAATTGGCAGCAACCGAAC
229445 AAATTTACT
1 AAATTTACT
229454 AAGCAATCTA
Statistics
Matches: 285, Mismatches: 1, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
92 92 0.32
93 193 0.68
ACGTcount: A:0.46, C:0.18, G:0.13, T:0.23
Consensus pattern (93 bp):
AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
AGTTTAGCAGAATTGGCAGCAACCGAAC
Found at i:229387 original size:185 final size:186
Alignment explanation
Indices: 229074--229453 Score: 735
Period size: 185 Copynumber: 2.0 Consensus size: 186
229064 TTGAATGGAT
229074 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
229139 AGTTTAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAA
66 AGTTTAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAA
229204 TACTATTTCACAGTGTTAAAGAATACACAGTTTAGCAGAATTGGCAGCAACCGAAC
131 TACTATTTCACAGTGTTAAAGAATACACAGTTTAGCAGAATTGGCAGCAACCGAAC
229260 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATA-TATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
229324 AGTTTAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAA
66 AGTTTAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAA
* *
229389 TATTATTTCACAGTGTTAAAGAATACACAGTTTAGCAGAATTGGCAGCAACCGAAT
131 TACTATTTCACAGTGTTAAAGAATACACAGTTTAGCAGAATTGGCAGCAACCGAAC
229445 AAATTTACT
1 AAATTTACT
229454 AAGCAATCTA
Statistics
Matches: 192, Mismatches: 2, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
185 153 0.80
186 39 0.20
ACGTcount: A:0.46, C:0.18, G:0.13, T:0.23
Consensus pattern (186 bp):
AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
AGTTTAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAA
TACTATTTCACAGTGTTAAAGAATACACAGTTTAGCAGAATTGGCAGCAACCGAAC
Found at i:231179 original size:14 final size:14
Alignment explanation
Indices: 231160--231249 Score: 81
Period size: 14 Copynumber: 5.7 Consensus size: 14
231150 TTGAAATGAA
231160 AATCGCAACGAGAG
1 AATCGCAACGAGAG
231174 AATCGCAACGCGAGATG
1 AATCGCAA--CGAGA-G
231191 ACAATCGCAACGAGAG
1 --AATCGCAACGAGAG
*
231207 AATCGCAACGCGAAATGAA
1 AATCGCAA--CG--A-GAG
231226 AATCGCAACGAGAG
1 AATCGCAACGAGAG
231240 AATCGCAACG
1 AATCGCAACG
231250 CGAAATGAAA
Statistics
Matches: 64, Mismatches: 2, Indels: 20
0.74 0.02 0.23
Matches are distributed among these distances:
14 28 0.44
15 1 0.02
16 8 0.12
17 8 0.12
18 1 0.02
19 18 0.28
ACGTcount: A:0.42, C:0.23, G:0.26, T:0.09
Consensus pattern (14 bp):
AATCGCAACGAGAG
Found at i:231197 original size:33 final size:33
Alignment explanation
Indices: 231152--231266 Score: 212
Period size: 33 Copynumber: 3.5 Consensus size: 33
231142 TCTTTTGGTT
231152 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
* *
231185 GAGATGACAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
231218 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
231251 GAAATGAAAATCGCAA
1 GAAATGAAAATCGCAA
231267 TGCGATTTTG
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 78 1.00
ACGTcount: A:0.45, C:0.21, G:0.24, T:0.10
Consensus pattern (33 bp):
GAAATGAAAATCGCAACGAGAGAATCGCAACGC
Found at i:231198 original size:19 final size:18
Alignment explanation
Indices: 231159--231271 Score: 88
Period size: 19 Copynumber: 6.8 Consensus size: 18
231149 GTTGAAATGA
231159 AAATCGCAA--CGAGA-G
1 AAATCGCAACGCGAGATG
231174 -AATCGCAACGCGAGATG
1 AAATCGCAACGCGAGATG
231191 ACAATCGCAA--CGAGA-G
1 A-AATCGCAACGCGAGATG
*
231207 -AATCGCAACGCGAAATG
1 AAATCGCAACGCGAGATG
231224 AAAATCGCAA--CGAGA-G
1 -AAATCGCAACGCGAGATG
*
231240 -AATCGCAACGCGAAATG
1 AAATCGCAACGCGAGATG
*
231257 AAAATCGCAATGCGA
1 -AAATCGCAACGCGA
231272 TTTTGGTTTC
Statistics
Matches: 79, Mismatches: 4, Indels: 26
0.72 0.04 0.24
Matches are distributed among these distances:
14 24 0.30
16 15 0.19
17 12 0.15
19 28 0.35
ACGTcount: A:0.43, C:0.22, G:0.25, T:0.10
Consensus pattern (18 bp):
AAATCGCAACGCGAGATG
Found at i:231302 original size:14 final size:14
Alignment explanation
Indices: 231283--231337 Score: 56
Period size: 14 Copynumber: 3.6 Consensus size: 14
231273 TTTGGTTTCG
231283 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
*
231297 CGTTGCGATTTTCATTTCG
1 CGTTGCGA--TTC---TCT
231316 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
231330 CGTTGCGA
1 CGTTGCGA
231338 CAGTCATTCT
Statistics
Matches: 34, Mismatches: 2, Indels: 10
0.74 0.04 0.22
Matches are distributed among these distances:
14 18 0.53
16 3 0.09
17 3 0.09
19 10 0.29
ACGTcount: A:0.09, C:0.25, G:0.24, T:0.42
Consensus pattern (14 bp):
CGTTGCGATTCTCT
Found at i:231315 original size:33 final size:33
Alignment explanation
Indices: 231267--231337 Score: 124
Period size: 33 Copynumber: 2.2 Consensus size: 33
231257 AAAATCGCAA
**
231267 TGCGATTTTGGTTTCGCGTTGCGATTCTCTCGT
1 TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
231300 TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
1 TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
231333 TGCGA
1 TGCGA
231338 CAGTCATTCT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 36 1.00
ACGTcount: A:0.08, C:0.23, G:0.25, T:0.44
Consensus pattern (33 bp):
TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
Found at i:231345 original size:33 final size:33
Alignment explanation
Indices: 231278--231359 Score: 119
Period size: 33 Copynumber: 2.5 Consensus size: 33
231268 GCGATTTTGG
***
231278 TTTCGCGTTGCGATTCTCTCGTTGCGATTTTCA
1 TTTCGCGTTGCGATTCTCTCGTTGCGACAGTCA
231311 TTTCGCGTTGCGATTCTCTCGTTGCGACAGTCA
1 TTTCGCGTTGCGATTCTCTCGTTGCGACAGTCA
*
231344 TTCTCTCGTTGCGATT
1 TT-TCGCGTTGCGATT
231360 TTCATTTATC
Statistics
Matches: 44, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
33 32 0.73
34 12 0.27
ACGTcount: A:0.10, C:0.26, G:0.22, T:0.43
Consensus pattern (33 bp):
TTTCGCGTTGCGATTCTCTCGTTGCGACAGTCA
Found at i:231364 original size:20 final size:20
Alignment explanation
Indices: 231290--231378 Score: 75
Period size: 20 Copynumber: 4.8 Consensus size: 20
231280 TCGCGTTGCG
231290 ATTCTCTCGTTGCGATTTTC
1 ATTCTCTCGTTGCGATTTTC
*
231310 ATT-TCGCGTTGCG------
1 ATTCTCTCGTTGCGATTTTC
***
231323 ATTCTCTCGTTGCGACAGTC
1 ATTCTCTCGTTGCGATTTTC
231343 ATTCTCTCGTTGCGATTTTC
1 ATTCTCTCGTTGCGATTTTC
*
231363 ATTTATCTCGTTGCGA
1 A-TTCTCTCGTTGCGA
231379 CTCTTCTGCA
Statistics
Matches: 55, Mismatches: 6, Indels: 15
0.72 0.08 0.20
Matches are distributed among these distances:
13 3 0.05
14 9 0.16
19 9 0.16
20 21 0.38
21 13 0.24
ACGTcount: A:0.12, C:0.25, G:0.19, T:0.44
Consensus pattern (20 bp):
ATTCTCTCGTTGCGATTTTC
Found at i:231499 original size:33 final size:33
Alignment explanation
Indices: 231460--231527 Score: 118
Period size: 33 Copynumber: 2.1 Consensus size: 33
231450 TACTAACTTG
*
231460 AAATCGCAACGAGAGAATCGCAACGCGAAATGA
1 AAATCGCAACGACAGAATCGCAACGCGAAATGA
*
231493 AAATCGCAACGACAGAATCGTAACGCGAAATGA
1 AAATCGCAACGACAGAATCGCAACGCGAAATGA
231526 AA
1 AA
231528 TCTAAGTGAA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.47, C:0.21, G:0.22, T:0.10
Consensus pattern (33 bp):
AAATCGCAACGACAGAATCGCAACGCGAAATGA
Found at i:231761 original size:22 final size:22
Alignment explanation
Indices: 231709--231763 Score: 74
Period size: 22 Copynumber: 2.5 Consensus size: 22
231699 TGGTTGTGAG
**
231709 GGATTTCGCCGGAGATGGGGAC
1 GGATTTCTTCGGAGATGGGGAC
**
231731 GGAAATCTTCGGAGATGGGGAC
1 GGATTTCTTCGGAGATGGGGAC
231753 GGATTTCTTCG
1 GGATTTCTTCG
231764 CCGTAGAGAG
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.20, C:0.16, G:0.40, T:0.24
Consensus pattern (22 bp):
GGATTTCTTCGGAGATGGGGAC
Found at i:231934 original size:20 final size:20
Alignment explanation
Indices: 231909--232102 Score: 221
Period size: 20 Copynumber: 9.7 Consensus size: 20
231899 CTTTAAATAT
231909 CGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
* *
231929 CGCGTTGCGATTTTATGTATTA
1 CGCGTTGCGA-TTTACGGA-TA
*
231951 -TCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
*
231970 CGCGTTGCGATATACGGATA
1 CGCGTTGCGATTTACGGATA
* **
231990 CGCATTGCGATTTACCCATA
1 CGCGTTGCGATTTACGGATA
232010 CGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
*
232030 CACGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
* *
232050 CGCGTTGCGATTTATGTG-TT
1 CGCGTTGCGATTTACG-GATA
* ** *
232070 CGCGTTGCGATTTTCATATT
1 CGCGTTGCGATTTACGGATA
232090 CGCGTTGCGATTT
1 CGCGTTGCGATTT
232103 TGGAAAATCG
Statistics
Matches: 147, Mismatches: 22, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
19 2 0.01
20 128 0.87
21 15 0.10
22 2 0.01
ACGTcount: A:0.19, C:0.20, G:0.26, T:0.36
Consensus pattern (20 bp):
CGCGTTGCGATTTACGGATA
Found at i:232096 original size:60 final size:60
Alignment explanation
Indices: 231909--232102 Score: 253
Period size: 60 Copynumber: 3.2 Consensus size: 60
231899 CTTTAAATAT
**
231909 CGCGTTGCGATTTACGGATACGCGTTGCGATTTTATGTATTATCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATACGCGTTGCGA-TTTATGTATTCGCGTTGCGATTTACGGATA
* * *** *
231970 CGCGTTGCGATATACGGATACGCATTGCGATTTACCCATACGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATACGCGTTGCGATTTATGTATTCGCGTTGCGATTTACGGATA
* * * ** *
232030 CACGTTGCGATTTACGGATACGCGTTGCGATTTATGTGTTCGCGTTGCGATTTTCATATT
1 CGCGTTGCGATTTACGGATACGCGTTGCGATTTATGTATTCGCGTTGCGATTTACGGATA
232090 CGCGTTGCGATTT
1 CGCGTTGCGATTT
232103 TGGAAAATCG
Statistics
Matches: 112, Mismatches: 21, Indels: 1
0.84 0.16 0.01
Matches are distributed among these distances:
60 84 0.75
61 28 0.25
ACGTcount: A:0.19, C:0.20, G:0.26, T:0.36
Consensus pattern (60 bp):
CGCGTTGCGATTTACGGATACGCGTTGCGATTTATGTATTCGCGTTGCGATTTACGGATA
Found at i:232119 original size:21 final size:20
Alignment explanation
Indices: 232095--232171 Score: 57
Period size: 21 Copynumber: 3.7 Consensus size: 20
232085 ATATTCGCGT
232095 TGCGATTTTGGAAAATCGCAA
1 TGCGATTTTGGAAAATCGC-A
* * **
232116 TGCGAATTTGTACTATCGCA
1 TGCGATTTTGGAAAATCGCA
* *
232136 TCGCGATTTT-CAAGAATCGCGT
1 T-GCGATTTTGGAA-AATCGC-A
232158 TGCGATTTTGGAAA
1 TGCGATTTTGGAAA
232172 CTGATTTGCG
Statistics
Matches: 42, Mismatches: 10, Indels: 8
0.70 0.17 0.13
Matches are distributed among these distances:
20 3 0.07
21 36 0.86
22 3 0.07
ACGTcount: A:0.27, C:0.17, G:0.23, T:0.32
Consensus pattern (20 bp):
TGCGATTTTGGAAAATCGCA
Found at i:232182 original size:20 final size:20
Alignment explanation
Indices: 232157--232208 Score: 95
Period size: 20 Copynumber: 2.6 Consensus size: 20
232147 AAGAATCGCG
*
232157 TTGCGATTTTGGAAACTGAT
1 TTGCGATTCTGGAAACTGAT
232177 TTGCGATTCTGGAAACTGAT
1 TTGCGATTCTGGAAACTGAT
232197 TTGCGATTCTGG
1 TTGCGATTCTGG
232209 GGATCGCGTT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.21, C:0.13, G:0.27, T:0.38
Consensus pattern (20 bp):
TTGCGATTCTGGAAACTGAT
Found at i:233421 original size:3 final size:3
Alignment explanation
Indices: 233413--233492 Score: 160
Period size: 3 Copynumber: 26.7 Consensus size: 3
233403 TTTCTCTATA
233413 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
233461 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
233493 ATGGTTTCAT
Statistics
Matches: 77, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 77 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:240435 original size:22 final size:23
Alignment explanation
Indices: 240401--240445 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 23
240391 ATAAAATAAT
240401 AATAATATTTTTAA-AATATTAA
1 AATAATATTTTTAACAATATTAA
*
240423 AATAAT-TTATTTAACATTATTAA
1 AATAATATT-TTTAACAATATTAA
240446 TGTCAATATT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 2 0.10
22 11 0.55
23 7 0.35
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (23 bp):
AATAATATTTTTAACAATATTAA
Found at i:240554 original size:33 final size:34
Alignment explanation
Indices: 240512--240587 Score: 95
Period size: 33 Copynumber: 2.3 Consensus size: 34
240502 ATTATTATAT
**
240512 TTTATTAAAAAATATTATAA-AT-TATATTAATTA
1 TTTATTAAAAAATAGAATAATATAT-TATTAATTA
*
240545 TTTATT-AAAATTAGAATAATATATTATTAATTA
1 TTTATTAAAAAATAGAATAATATATTATTAATTA
240578 TTTATTAAAA
1 TTTATTAAAA
240588 TAAAATAATA
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
32 10 0.27
33 23 0.62
34 4 0.11
ACGTcount: A:0.50, C:0.00, G:0.01, T:0.49
Consensus pattern (34 bp):
TTTATTAAAAAATAGAATAATATATTATTAATTA
Found at i:240555 original size:22 final size:22
Alignment explanation
Indices: 240524--240574 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 22
240514 TATTAAAAAA
* *
240524 TATTATAAATTATATTAAT-TATT
1 TATTA-AAATTAGAATAATATA-T
240547 TATTAAAATTAGAATAATATAT
1 TATTAAAATTAGAATAATATAT
240569 TATTAA
1 TATTAA
240575 TTATTTATTA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
22 18 0.72
23 7 0.28
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (22 bp):
TATTAAAATTAGAATAATATAT
Found at i:240588 original size:33 final size:32
Alignment explanation
Indices: 240536--240597 Score: 106
Period size: 33 Copynumber: 1.9 Consensus size: 32
240526 TTATAAATTA
*
240536 TATTAATTATTTATTAAAATTAGAATAATATAT
1 TATTAATTATTTATTAAAA-TAAAATAATATAT
240569 TATTAATTATTTATTAAAATAAAATAATA
1 TATTAATTATTTATTAAAATAAAATAATA
240598 AAATTAAAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
32 9 0.32
33 19 0.68
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.47
Consensus pattern (32 bp):
TATTAATTATTTATTAAAATAAAATAATATAT
Found at i:240840 original size:13 final size:13
Alignment explanation
Indices: 240817--240859 Score: 52
Period size: 13 Copynumber: 3.2 Consensus size: 13
240807 TTTTTATTAA
240817 AATGATATTAAAAT
1 AATG-TATTAAAAT
240831 AATGTATTAAAAT
1 AATGTATTAAAAT
*
240844 AAATTTA-TAAAAT
1 -AATGTATTAAAAT
240857 AAT
1 AAT
240860 AATGTTTTGA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
12 3 0.11
13 15 0.56
14 9 0.33
ACGTcount: A:0.58, C:0.00, G:0.05, T:0.37
Consensus pattern (13 bp):
AATGTATTAAAAT
Found at i:242344 original size:26 final size:26
Alignment explanation
Indices: 242305--242364 Score: 68
Period size: 26 Copynumber: 2.2 Consensus size: 26
242295 TTTTATAATA
**
242305 ATAAATTTTTTATAATTTT-AAAAATT
1 ATAAATTTCATAT-ATTTTAAAAAATT
242331 ATAAATTTCATATATTTTGAAAAAATT
1 ATAAATTTCATATATTTT-AAAAAATT
242358 ATTAAAT
1 A-TAAAT
242365 AATATTTCAT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
25 5 0.17
26 11 0.38
27 8 0.28
28 5 0.17
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (26 bp):
ATAAATTTCATATATTTTAAAAAATT
Found at i:243001 original size:342 final size:340
Alignment explanation
Indices: 242351--243186 Score: 1327
Period size: 342 Copynumber: 2.5 Consensus size: 340
242341 TATATTTTGA
* * *
242351 AAAAATTATTAAATAATATTTCATTTGATCCCTCAATTGTAATTAAAAGTTTATTTTAATATTTT
1 AAAAATTAATAAATAATAATTCATTTGATCCTTCAATTGTAATTAAAAGTTTATTTTAATATTTT
242416 TTATATTTTTTAAACAATTAATTTTAAAAGGCAATAA--TTTTTTCAAAAATATATGAAATTTAT
66 TTATA-TTTTTAAACAATTAATTTTAAAAGG-AATAATTTTTTTTCAAAAATATATGAAATTTAT
* * *
242479 AATTTTTTAAATTAT-AAATA-T-TTATCATCATCATCATCATTTTGTAAAAGAAATACTAGTTA
129 AATTTTTAAAATTATAAAATATTATTATTATCATCATCATCATTTTATAAAAGAAATACTAGTTA
*
242541 TAAAACTTTTATAAAAGTATTCATATTTTAAAATACTTACCCTCAAAGTTTTTATATACTAGATT
194 TAAAACTTTTATAAAAGTATTCATATTTTAAAATACTTACCCTCAAAGTTTTCATATACTAGATT
** **
242606 ATATGTATTGTGTAATTTTAATGCAAAAATTTAAATAATTTTATTAAAAATGAATAAACATTATT
259 ATACATATTGTGTAATTTTAATGCAAAAATCAAAATAATTTTATTAAAAATGAATAAACATTATT
* *
242671 AACTGTTGTTAAAAATT
324 AACCGTTGTTAAAAAAT
* *
242688 AAAAATTAATAAATAATAATTCATTTGATCATTCAGTTGTAATTAAAAGTTTATTTTAATATTTT
1 AAAAATTAATAAATAATAATTCATTTGATCCTTCAATTGTAATTAAAAGTTTATTTTAATATTTT
242753 TTATATTTTTAAACAATTAATTTTAAAAGGTAATAATTTTTTTTCAAAAATATATGAAATTTATA
66 TTATATTTTTAAACAATTAATTTTAAAAGG-AATAATTTTTTTTCAAAAATATATGAAATTTATA
242818 ATTTTTAAAATTATAAAATATTTATTATTATCATCATCATCATTTTATAAAAGAAATACTAGTTA
130 ATTTTTAAAATTATAAAATA-TTATTATTATCATCATCATCATTTTATAAAAGAAATACTAGTTA
* *
242883 TAAAACTTTTATAAAATTATTCATATTTTAAAAATACTTACCCTCAAAGTTTTCCTATACTAGAT
194 TAAAACTTTTATAAAAGTATTCATATTTT-AAAATACTTACCCTCAAAGTTTTCATATACTAGAT
242948 TATACATATTGTGTAATTTTAATG-ATAAAATCAAAATAATTTTATT-AAAATGAATAAACATTA
258 TATACATATTGTGTAATTTTAATGCA-AAAATCAAAATAATTTTATTAAAAATGAATAAACATTA
243011 TTAACCGTTGTTAAAAAAT
322 TTAACCGTTGTTAAAAAAT
* *
243030 AAAAATTAATGAATAATAATTCATTTAATCCCTT-AATTGTAATTAAAAGTTTATTTTAATA-TT
1 AAAAATTAATAAATAATAATTCATTTGAT-CCTTCAATTGTAATTAAAAGTTTATTTTAATATTT
243093 TTTATATTTTTAAACAATTAATTTTAAAA-GAA-AATATTTTTTTC-AAAATATATGAAATTTAT
65 TTTATATTTTTAAACAATTAATTTTAAAAGGAATAAT-TTTTTTTCAAAAATATATGAAATTTAT
*
243155 AATTTTTAAAATTATAAAAAAATTATTATTAT
129 AATTTTTAAAATTAT-AAAATATTATTATTAT
243187 AAAAAATAAA
Statistics
Matches: 465, Mismatches: 23, Indels: 21
0.91 0.05 0.04
Matches are distributed among these distances:
336 30 0.06
337 65 0.14
338 86 0.18
339 20 0.04
340 1 0.00
341 32 0.07
342 155 0.33
343 76 0.16
ACGTcount: A:0.44, C:0.07, G:0.05, T:0.44
Consensus pattern (340 bp):
AAAAATTAATAAATAATAATTCATTTGATCCTTCAATTGTAATTAAAAGTTTATTTTAATATTTT
TTATATTTTTAAACAATTAATTTTAAAAGGAATAATTTTTTTTCAAAAATATATGAAATTTATAA
TTTTTAAAATTATAAAATATTATTATTATCATCATCATCATTTTATAAAAGAAATACTAGTTATA
AAACTTTTATAAAAGTATTCATATTTTAAAATACTTACCCTCAAAGTTTTCATATACTAGATTAT
ACATATTGTGTAATTTTAATGCAAAAATCAAAATAATTTTATTAAAAATGAATAAACATTATTAA
CCGTTGTTAAAAAAT
Done.