genome.fa.s1968.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001968.1 Hibiscus syriacus cultivar Beakdansim tig00003976_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55014

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4070--4135	21	3.2	21	73	4	71	42	15	25	16	1.87
4049--4139	41	2.2	41	90	1	148	38	16	26	18	1.92
4719--4775	20	2.8	20	84	5	62	15	17	22	43	1.87
6080--6124	18	2.5	18	88	0	72	26	44	15	13	1.83
6607--6649	19	2.2	20	91	4	70	16	25	25	32	1.96
9205--9258	24	2.2	24	90	0	81	24	16	20	38	1.92
9431--9455	12	2.1	12	100	0	50	72	0	28	0	0.86
11743--11834	19	5.4	19	66	24	78	43	19	20	16	1.88
11743--11854	33	3.4	33	85	4	163	41	20	23	14	1.88
11850--11892	20	2.2	20	87	4	61	16	18	23	41	1.89
11878--11911	14	2.4	14	85	0	50	8	23	20	47	1.78
12032--12068	14	2.6	14	91	0	65	45	24	0	29	1.53
12573--12625	20	2.7	20	93	0	88	26	20	28	24	1.99
12634--12687	20	2.7	20	94	5	92	27	18	22	31	1.97
12574--12690	61	1.9	61	83	0	153	24	17	23	33	1.97
12574--12708	61	2.2	61	80	2	146	23	20	23	32	1.98
12758--12798	21	2.0	21	85	0	55	34	31	17	17	1.93
13266--13305	3	13.0	3	89	5	62	35	2	0	62	1.09
26705--26813	57	1.9	57	87	5	159	32	22	16	28	1.96
30239--30276	15	2.6	15	95	4	69	76	5	18	0	0.97
30230--30308	29	2.7	29	79	12	74	74	5	16	3	1.14
31464--31716	37	7.1	37	78	10	258	30	19	9	41	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31473--31660	102	1.8	102	88	5	290	32	18	8	40	1.80
31570--31733	37	4.4	37	92	3	240	31	21	7	39	1.82
31834--31948	36	3.2	36	71	6	92	40	16	10	33	1.83
31994--32209	65	3.3	66	88	4	296	28	19	10	41	1.84
32210--32389	36	5.0	36	89	1	279	25	24	12	37	1.91
32288--32479	94	2.1	93	89	1	294	26	24	11	36	1.90
32252--32497	130	1.9	129	91	0	402	26	25	13	35	1.92
32324--32444	57	2.1	58	90	1	190	24	24	12	38	1.90
32382--32497	36	3.2	36	88	0	178	25	26	12	34	1.92
32472--32512	15	2.7	15	92	0	64	17	34	19	29	1.94
36563--36624	29	2.1	29	100	0	124	43	8	11	37	1.70
37434--37487	22	2.7	19	85	8	63	37	14	16	31	1.89
37835--38165	54	6.1	53	80	8	298	32	21	19	26	1.97
37835--38165	108	3.1	107	83	3	389	32	21	19	26	1.97
40132--40161	13	2.2	14	94	5	53	60	6	0	33	1.23
40304--40351	2	25.5	2	87	12	75	50	0	0	50	1.00
40308--40351	15	2.7	17	89	10	74	50	0	0	50	1.00
40304--40351	17	2.7	19	87	12	75	50	0	0	50	1.00
40304--40350	13	3.8	13	88	5	71	51	0	0	48	1.00
40866--41340	194	2.5	192	83	7	558	33	15	14	36	1.88
44017--44065	19	2.6	19	96	0	89	51	10	6	32	1.61
45674--46152	193	2.5	195	83	8	618	32	14	15	37	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45674--46232	193	2.9	194	82	8	617	32	14	14	38	1.87
47892--47916	11	2.3	11	100	0	50	48	8	8	36	1.62
48328--48370	18	2.5	17	81	7	59	55	9	2	32	1.44
49883--49921	18	2.2	18	95	0	69	7	35	0	56	1.28
52356--52722	176	2.1	176	89	5	533	28	16	11	43	1.83
52744--52782	20	2.0	20	89	0	60	20	15	10	53	1.70
52579--52862	140	2.0	141	87	5	414	24	15	11	47	1.79
52866--52915	20	2.5	20	96	0	91	44	10	12	34	1.75

Tables:   1

The End!