genome.fa.s1970.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001970.1 Hibiscus syriacus cultivar Beakdansim tig00003980_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  88513

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3485--3530	22	2.1	21	84	4	56	34	28	13	23	1.92
10380--10417	20	1.9	20	88	0	58	31	15	26	26	1.96
15531--15556	2	13.0	2	100	0	52	50	0	0	50	1.00
15542--15905	134	2.7	133	85	6	454	48	7	6	37	1.58
15564--15950	134	3.0	129	81	10	377	49	7	6	36	1.57
16257--16289	2	16.5	2	93	0	57	51	3	0	45	1.16
17386--17489	3	35.0	3	78	5	95	60	2	0	36	1.12
17442--17500	28	2.1	28	87	0	82	72	3	0	23	0.99
17454--17506	20	2.5	20	82	11	54	75	3	1	18	1.05
17946--18442	107	4.5	107	83	8	581	30	16	14	38	1.89
20426--20459	17	1.9	18	88	5	52	44	20	17	17	1.87
27489--27857	138	2.8	138	83	9	448	46	7	7	38	1.61
29367--29480	3	38.0	3	89	3	140	60	0	0	38	1.03
29966--30015	20	2.5	20	83	3	66	28	16	28	28	1.97
42265--42302	19	2.0	20	89	5	60	26	7	7	57	1.54
51951--51983	2	17.0	2	93	6	59	48	0	0	51	1.00
57438--60020	8	322.9	8	86	0	2434	42	24	6	26	1.79
57438--60020	12	215.2	12	79	0	2434	42	24	6	26	1.79
60990--61113	62	2.0	62	96	0	230	29	5	15	50	1.67
62067--62127	3	19.7	3	83	12	70	37	1	0	60	1.07
63631--63688	30	1.9	31	82	6	75	24	6	24	44	1.77
64998--65043	23	2.0	23	86	0	65	30	26	23	19	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71599--71642	3	15.0	3	95	4	81	65	0	0	34	0.93
71862--71922	23	2.7	23	78	0	77	27	24	26	21	1.99
73233--73257	13	1.9	13	100	0	50	60	0	32	8	1.26
74619--74661	12	3.2	14	81	18	56	20	13	13	51	1.76
77117--77201	37	2.3	37	91	2	136	29	17	12	40	1.87
77133--77371	102	2.3	103	81	7	308	28	17	12	41	1.86
77254--77643	66	5.9	66	84	4	500	26	18	13	40	1.89
77272--77638	198	1.8	199	88	1	567	26	19	14	40	1.89
77496--77606	30	3.5	30	70	21	82	28	18	11	40	1.86
77133--77576	102	4.4	101	67	19	273	27	18	13	40	1.88
77645--78004	131	2.7	132	84	3	429	26	30	17	25	1.97
82812--82850	20	2.0	20	94	0	69	43	15	17	23	1.87
83400--83489	20	4.5	20	98	0	171	51	20	14	14	1.77
83500--83557	18	3.2	18	90	9	91	10	20	18	50	1.76
83567--83642	20	3.8	20	98	0	143	51	19	14	14	1.76
83400--83715	172	1.8	175	87	3	478	31	18	17	31	1.95
83653--83722	20	3.5	20	96	1	124	8	18	21	51	1.72
83645--83722	39	2.0	39	90	5	122	10	16	21	51	1.74
83653--83735	20	4.2	20	89	1	105	13	16	18	51	1.76
84884--84914	15	2.1	15	93	0	53	54	0	0	45	0.99
85394--85424	15	2.1	15	93	0	53	48	3	12	35	1.58
86200--86247	24	2.0	24	100	0	96	50	16	4	29	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
87045--87236	43	4.4	42	78	6	168	38	19	20	21	1.94
87248--87373	43	2.9	43	87	0	180	34	23	22	19	1.97

Tables:   1

The End!