genome.fa.s1972.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001972.1 Hibiscus syriacus cultivar Beakdansim tig00003989_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  69092

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13--85	31	2.4	31	75	4	78	36	6	2	53	1.42
79--155	30	2.6	30	85	0	91	38	10	3	46	1.56
149--215	30	2.3	30	81	2	73	44	10	0	44	1.38
175--235	28	2.1	30	87	6	90	39	3	0	57	1.15
239--336	29	3.4	29	78	4	108	58	1	4	36	1.24
1223--1681	112	4.1	111	93	3	762	44	13	15	25	1.84
1552--1996	182	2.5	178	91	1	703	44	13	15	27	1.83
2640--2687	23	2.1	23	88	0	69	35	18	8	37	1.81
3012--3456	85	5.2	84	77	6	385	25	17	6	50	1.70
3014--3456	128	3.4	126	77	8	385	25	17	6	50	1.70
3012--3491	43	11.2	42	75	8	317	26	17	6	50	1.70
11551--11674	63	1.9	65	87	6	182	28	19	20	31	1.97
11714--11779	20	3.3	20	91	0	114	19	13	33	33	1.91
12440--12468	14	2.0	15	93	6	51	62	27	3	6	1.37
13226--13255	15	2.0	15	93	0	51	40	30	0	30	1.57
19971--20171	65	3.1	64	78	13	214	25	19	23	31	1.98
22419--22456	18	2.1	18	85	9	51	39	0	0	60	0.97
28242--28295	21	2.5	22	88	8	76	33	16	25	24	1.96
28783--28812	15	2.1	14	93	6	51	53	0	13	33	1.40
31605--31646	22	1.9	22	85	9	59	40	0	28	30	1.57
33189--33226	18	2.2	17	90	4	58	23	13	28	34	1.92
35374--35398	13	1.9	13	100	0	50	16	12	8	64	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40682--40781	50	2.0	50	100	0	200	28	4	32	36	1.76
58492--58529	19	2.0	20	84	5	51	47	2	23	26	1.65
59915--60172	124	2.1	124	91	0	408	29	18	14	37	1.91
60084--60435	139	2.5	139	90	0	535	26	21	17	35	1.95
62947--63000	6	9.5	6	72	11	51	0	22	0	77	0.76
65843--65930	28	3.2	28	78	1	70	51	10	18	20	1.75
67270--67312	21	2.2	20	84	12	54	69	0	9	20	1.15
67284--67326	22	2.0	21	81	4	50	55	4	6	32	1.47

Tables:   1

The End!