genome.fa.s1973.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001973.1 Hibiscus syriacus cultivar Beakdansim tig00003995_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63695

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2189--2229	17	2.3	18	87	4	57	46	26	4	21	1.72
3382--3420	3	13.0	3	84	10	53	33	2	0	64	1.08
5310--5338	2	14.5	2	100	0	58	48	0	0	51	1.00
6007--6083	22	3.6	22	64	15	54	45	27	5	22	1.73
6000--6075	40	1.9	40	94	0	134	46	27	3	22	1.70
10495--10548	23	2.3	24	80	3	65	51	14	9	24	1.71
10502--10547	24	2.0	23	86	4	65	50	15	10	23	1.75
10544--10621	24	3.2	24	79	0	84	43	19	15	21	1.87
10545--10636	48	1.9	48	81	0	112	45	18	13	22	1.84
14174--14284	54	2.1	54	91	0	177	39	14	22	23	1.91
14750--14825	24	3.2	24	67	0	62	51	15	7	25	1.70
16726--16758	17	1.9	17	93	0	57	39	24	18	18	1.92
16780--16817	19	2.0	20	94	5	69	5	28	39	26	1.78
18598--18643	24	1.9	24	82	8	58	34	21	8	34	1.84
19026--19101	40	1.9	40	88	0	116	43	28	5	22	1.75
19231--19452	21	10.3	21	71	9	99	37	23	18	21	1.94
19229--19345	21	5.4	21	78	5	126	35	25	20	17	1.95
19229--19369	44	3.2	43	80	3	140	36	25	18	19	1.95
33729--33758	15	2.0	15	100	0	60	13	46	26	13	1.80
35412--35454	3	13.7	3	85	4	50	0	30	2	67	1.03
35412--35450	14	2.7	15	88	4	53	0	28	2	69	1.02
45291--45323	16	2.0	17	88	5	50	39	21	6	33	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49100--49139	16	2.4	16	87	4	53	67	0	2	30	1.04
49243--49278	18	2.1	18	94	5	65	16	16	8	58	1.61

Tables:   1

The End!