Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001974.1 Hibiscus syriacus cultivar Beakdansim tig00003997_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  93026

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
18--135
62
1.9
61
89
3
182
38
22
14
24
1.91
18--143
63
2.0
61
87
3
180
39
21
13
25
1.90
186--293
56
1.9
56
88
3
164
39
11
16
32
1.84
375--466
45
2.1
44
89
2
139
45
13
21
19
1.84
3719--3835
41
2.8
42
92
2
191
35
8
18
36
1.82
3960--4018
28
2.1
28
93
0
100
59
10
10
20
1.58
4373--4427
28
2.0
28
92
7
94
43
12
21
21
1.86
8923--8947
7
3.6
7
100
0
50
44
28
0
28
1.55
9108--9147
21
1.9
21
94
0
71
35
30
20
15
1.93
11811--11863
21
2.3
21
78
12
52
26
26
7
39
1.83
13014--13044
2
15.5
2
100
0
62
51
0
0
48
1.00
25266--26026
238
3.2
236
85
3
1010
28
28
16
26
1.97
25267--26025
297
2.6
295
87
3
1042
28
28
16
27
1.97
25267--26026
59
12.8
59
86
1
1020
28
28
16
26
1.97
34370--34440
28
2.5
27
80
8
79
18
8
14
59
1.60
34387--34444
28
2.0
30
86
6
84
20
8
17
53
1.70
35572--35666
2
47.5
2
100
0
190
49
0
0
50
1.00
36532--36571
17
2.4
17
87
4
64
47
0
2
50
1.14
37153--37197
20
2.2
20
96
0
81
17
28
11
42
1.84
41428--41486
29
2.0
29
84
12
77
44
1
0
54
1.10
41428--41483
27
2.0
29
83
10
73
46
1
0
51
1.11
45607--45648
20
2.1
20
86
8
59
73
0
0
26
0.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45609--45648
21
2.1
19
86
13
55
75
0
0
25
0.81
46204--46297
2
50.0
2
70
12
56
52
0
0
47
1.00
46295--46359
12
5.5
12
81
3
69
27
47
12
12
1.77
65869--65949
38
2.1
38
86
0
108
38
20
11
29
1.88
66711--66751
17
2.4
17
95
0
73
39
26
29
4
1.77
72680--73040
187
1.9
189
86
5
514
25
13
19
41
1.88
74736--74918
65
2.8
63
81
5
215
29
23
18
28
1.98
75250--75287
14
2.8
14
96
4
69
18
7
13
60
1.56
76070--76099
14
2.1
14
93
0
51
33
16
36
13
1.88
77092--77140
21
2.4
20
80
13
55
55
2
6
36
1.37
80925--81018
44
2.1
44
83
11
113
22
26
20
30
1.98
84380--84750
184
2.0
184
100
0
742
26
18
12
42
1.86
91000--91045
22
2.1
21
84
4
56
34
28
13
23
1.92
91583--91624
22
2.0
22
85
4
59
26
28
9
35
1.88

Tables:   1

The End!