Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01001978.1 Hibiscus syriacus cultivar Beakdansim tig00004013_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2594977
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 5 of 10
Found at i:1075465 original size:18 final size:18
Alignment explanation
Indices: 1075439--1075478 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
1075429 CCAAGGATTT
1075439 AAATAGTGACACGACCGA
1 AAATAGTGACACGACCGA
* * *
1075457 AAATCGTGACGCGATCGA
1 AAATAGTGACACGACCGA
1075475 AAAT
1 AAAT
1075479 GCAACCACAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.42, C:0.20, G:0.23, T:0.15
Consensus pattern (18 bp):
AAATAGTGACACGACCGA
Found at i:1078653 original size:15 final size:15
Alignment explanation
Indices: 1078630--1078671 Score: 50
Period size: 15 Copynumber: 2.8 Consensus size: 15
1078620 TTCTCTAGAC
1078630 AATAACCTTAAAATA
1 AATAACCTTAAAATA
* *
1078645 AATATCCTTAAACTA
1 AATAACCTTAAAATA
1078660 AAGTAA-CTTAAA
1 AA-TAACCTTAAA
1078672 TTGTGTCTAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
15 21 0.91
16 2 0.09
ACGTcount: A:0.55, C:0.14, G:0.02, T:0.29
Consensus pattern (15 bp):
AATAACCTTAAAATA
Found at i:1079983 original size:3 final size:3
Alignment explanation
Indices: 1079955--1080035 Score: 62
Period size: 3 Copynumber: 27.3 Consensus size: 3
1079945 TTTGTAACAA
*
1079955 AAT AAT ATT AAT ATAT AA- ATAT AAT AAT -AT AAT ATAT AAT AAT -AT
1 AAT AAT AAT AAT A-AT AAT A-AT AAT AAT AAT AAT A-AT AAT AAT AAT
* * **
1080000 AGT AAT AAT -AT AAT AAT AGT AAT AAT GTT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1080036 TCAACTCAGA
Statistics
Matches: 61, Mismatches: 10, Indels: 14
0.72 0.12 0.16
Matches are distributed among these distances:
2 7 0.11
3 47 0.77
4 7 0.11
ACGTcount: A:0.58, C:0.00, G:0.04, T:0.38
Consensus pattern (3 bp):
AAT
Found at i:1079999 original size:8 final size:8
Alignment explanation
Indices: 1079955--1080036 Score: 73
Period size: 8 Copynumber: 10.0 Consensus size: 8
1079945 TTTGTAACAA
1079955 AATAATAT
1 AATAATAT
1079963 --TAATAT
1 AATAATAT
1079969 -ATAAATAT
1 AAT-AATAT
1079977 AATAATAT
1 AATAATAT
1079985 AAT-ATAT
1 AATAATAT
1079992 AATAATATAGT
1 AAT-A-ATA-T
1080003 AATAATAT
1 AATAATAT
1080011 AATAATAGT
1 AATAATA-T
*
1080020 AATAATGTT
1 AATAAT-AT
1080029 AATAATAT
1 AATAATAT
1080037 CAACTCAGAC
Statistics
Matches: 63, Mismatches: 2, Indels: 18
0.76 0.02 0.22
Matches are distributed among these distances:
6 6 0.10
7 8 0.13
8 22 0.35
9 19 0.30
10 4 0.06
11 4 0.06
ACGTcount: A:0.57, C:0.00, G:0.04, T:0.39
Consensus pattern (8 bp):
AATAATAT
Found at i:1080012 original size:26 final size:25
Alignment explanation
Indices: 1079965--1080036 Score: 87
Period size: 26 Copynumber: 2.9 Consensus size: 25
1079955 AATAATATTA
1079965 ATAT-ATAA-ATATAATAATATAAT
1 ATATAATAATATATAATAATATAAT
1079988 ATATAATAATATAGTAATAATATAAT
1 ATATAATAATATA-TAATAATATAAT
*
1080014 AATAGTAATAATGT-TAATAATAT
1 -ATA-TAATAATATATAATAATAT
1080037 CAACTCAGAC
Statistics
Matches: 43, Mismatches: 1, Indels: 7
0.84 0.02 0.14
Matches are distributed among these distances:
23 4 0.09
24 4 0.09
25 3 0.07
26 21 0.49
27 3 0.07
28 8 0.19
ACGTcount: A:0.57, C:0.00, G:0.04, T:0.39
Consensus pattern (25 bp):
ATATAATAATATATAATAATATAAT
Found at i:1080032 original size:34 final size:30
Alignment explanation
Indices: 1079956--1080032 Score: 91
Period size: 34 Copynumber: 2.4 Consensus size: 30
1079946 TTGTAACAAA
1079956 ATAATATTAATATATAAATATAATAATATA
1 ATAATATTAATATATAAATATAATAATATA
*
1079986 ATATATAATAATATAGTAATAATATAATAATAGTA
1 ATA-ATATTAATATA-T-A-AATATAATAATA-TA
*
1080021 ATAATGTTAATA
1 ATAATATTAATA
1080033 ATATCAACTC
Statistics
Matches: 39, Mismatches: 3, Indels: 6
0.81 0.06 0.12
Matches are distributed among these distances:
30 3 0.08
31 10 0.26
32 1 0.03
33 1 0.03
34 19 0.49
35 5 0.13
ACGTcount: A:0.57, C:0.00, G:0.04, T:0.39
Consensus pattern (30 bp):
ATAATATTAATATATAAATATAATAATATA
Found at i:1080223 original size:20 final size:20
Alignment explanation
Indices: 1080178--1080231 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 20
1080168 AAAACATCCT
* * *
1080178 ACCCTGAGGTTTTACAGATG
1 ACCCGGAGGTTTTACAAATC
*
1080198 AACCGGAGGTTTTACAAATC
1 ACCCGGAGGTTTTACAAATC
*
1080218 ACCCGGAGGATTTA
1 ACCCGGAGGTTTTA
1080232 ATTTTCTAGA
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (20 bp):
ACCCGGAGGTTTTACAAATC
Found at i:1080464 original size:20 final size:20
Alignment explanation
Indices: 1080417--1080464 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 20
1080407 AAAACATCCT
* * * *
1080417 ACCCTGAGGTTTTACAGATG
1 ACCCGGAGGCTTTACAAATC
1080437 ACCCGGAGGCTTTACAAATC
1 ACCCGGAGGCTTTACAAATC
*
1080457 ACCTGGAG
1 ACCCGGAG
1080465 AATTTAATTT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.27, C:0.25, G:0.25, T:0.23
Consensus pattern (20 bp):
ACCCGGAGGCTTTACAAATC
Found at i:1080484 original size:119 final size:119
Alignment explanation
Indices: 1080168--1080557 Score: 672
Period size: 119 Copynumber: 3.3 Consensus size: 119
1080158 TCAAAAATAA
* *
1080168 AAAACATCCTACCCTGAGGTTTTACAGATGAACCGGAGGTTTTACAAATCACCCGGAGGATTTAA
1 AAAACATCCTACCCTGAGGTTTTACAGATGACCCGGAGGCTTTACAAATCACCCGGAGGATTTAA
*
1080233 TTTTCTAGAACATTAAATGAGAAACTTTGAAAATTGCTTTCTCATTTTCATGTGA
66 TTTTCTAGAACATTAAATGAGAAACTTTGAAAATTGCTTTCTCATTTTCATG-GG
* * *
1080288 AAAAAATCCTACCCTGAGGTTTTACAGATGACCCGAAGGCTTTACAAATCACCCAGAGGATTTAA
1 AAAACATCCTACCCTGAGGTTTTACAGATGACCCGGAGGCTTTACAAATCACCCGGAGGATTTAA
*
1080353 TTTTCTAGAACATTAAATGAGAAACTTTGAAAATCGCTTTCTCATTTTCATGGG
66 TTTTCTAGAACATTAAATGAGAAACTTTGAAAATTGCTTTCTCATTTTCATGGG
* *
1080407 AAAACATCCTACCCTGAGGTTTTACAGATGACCCGGAGGCTTTACAAATCACCTGGAGAATTTAA
1 AAAACATCCTACCCTGAGGTTTTACAGATGACCCGGAGGCTTTACAAATCACCCGGAGGATTTAA
* *
1080472 TTTTCTAGAACATTAAATGAGAAACTTTGAAAATTGCTTTCTCATTTTTATGCG
66 TTTTCTAGAACATTAAATGAGAAACTTTGAAAATTGCTTTCTCATTTTCATGGG
1080526 AAAACATCCTACCCTGAGGTTTTACAGATGAC
1 AAAACATCCTACCCTGAGGTTTTACAGATGAC
1080558 TGAGGCTTTA
Statistics
Matches: 255, Mismatches: 15, Indels: 1
0.94 0.06 0.00
Matches are distributed among these distances:
119 144 0.56
120 111 0.44
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.31
Consensus pattern (119 bp):
AAAACATCCTACCCTGAGGTTTTACAGATGACCCGGAGGCTTTACAAATCACCCGGAGGATTTAA
TTTTCTAGAACATTAAATGAGAAACTTTGAAAATTGCTTTCTCATTTTCATGGG
Found at i:1081151 original size:22 final size:22
Alignment explanation
Indices: 1081120--1081178 Score: 100
Period size: 22 Copynumber: 2.7 Consensus size: 22
1081110 AAATTTGATA
*
1081120 AATCTTTCATCTTTAAAAAGAG
1 AATCTATCATCTTTAAAAAGAG
*
1081142 AATCTATCATCTTTGAAAAGAG
1 AATCTATCATCTTTAAAAAGAG
1081164 AATCTATCATCTTTA
1 AATCTATCATCTTTA
1081179 CAGAATGTAG
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 34 1.00
ACGTcount: A:0.39, C:0.15, G:0.08, T:0.37
Consensus pattern (22 bp):
AATCTATCATCTTTAAAAAGAG
Found at i:1097081 original size:3 final size:3
Alignment explanation
Indices: 1097069--1097166 Score: 55
Period size: 3 Copynumber: 33.7 Consensus size: 3
1097059 GTAATATTTG
* * *
1097069 TAA T-A TAA TAA TAT TAA TAA TAA -ATA TAA TGA TAT TAA TATA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA TAA TAA TAA TA-A TAA
** **
1097114 TAA TAA T-A TTG TAA T-A TTG TAA TAA T-A TAA TAA -AA GTAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA -TAA TAA
*
1097156 TAT TAA TAA TA
1 TAA TAA TAA TA
1097167 TCAACTCGAA
Statistics
Matches: 72, Mismatches: 14, Indels: 18
0.69 0.13 0.17
Matches are distributed among these distances:
2 11 0.15
3 55 0.76
4 6 0.08
ACGTcount: A:0.56, C:0.00, G:0.04, T:0.40
Consensus pattern (3 bp):
TAA
Found at i:1097095 original size:21 final size:21
Alignment explanation
Indices: 1097070--1097166 Score: 84
Period size: 19 Copynumber: 5.0 Consensus size: 21
1097060 TAATATTTGT
1097070 AATATAATAATATTAATAATA
1 AATATAATAATATTAATAATA
*
1097091 AATATAATGATATTAAT-ATA
1 AATATAATAATATTAATAATA
* *
1097111 TA-ATAATAATATT-GTAAT-
1 AATATAATAATATTAATAATA
* *
1097129 ATTGTAATAATA-TAAT-A-A
1 AATATAATAATATTAATAATA
*
1097147 AA-GTAATAATATTAATAATA
1 AATATAATAATATTAATAATA
1097167 TCAACTCGAA
Statistics
Matches: 60, Mismatches: 9, Indels: 15
0.71 0.11 0.18
Matches are distributed among these distances:
17 9 0.15
18 8 0.13
19 22 0.37
20 5 0.08
21 16 0.27
ACGTcount: A:0.57, C:0.00, G:0.04, T:0.39
Consensus pattern (21 bp):
AATATAATAATATTAATAATA
Found at i:1105798 original size:15 final size:15
Alignment explanation
Indices: 1105778--1105820 Score: 70
Period size: 15 Copynumber: 2.9 Consensus size: 15
1105768 ATAGCGCTCA
1105778 GACAGTTCAGTACCT
1 GACAGTTCAGTACCT
1105793 GACAGTTCAGTACCT
1 GACAGTTCAGTACCT
*
1105808 AACAGTTCA-TACC
1 GACAGTTCAGTACC
1105821 AGCTACTCAT
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
14 4 0.15
15 23 0.85
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (15 bp):
GACAGTTCAGTACCT
Found at i:1115222 original size:91 final size:90
Alignment explanation
Indices: 1115063--1115333 Score: 364
Period size: 91 Copynumber: 3.0 Consensus size: 90
1115053 ATATAAACCA
* ** * **
1115063 ATCAACATTTCCAGCGGGGAGTTCATAATGAGAAGAACTCATCCGATGAGGGAGAAGAAGTTCAT
1 ATCAACATTTCCAGTGGATAATTCATAATGAGAAGAACTCATCCGACAAGGGAGAAGAAGTTCAT
*
1115128 AATGAGAAAAGCTTGTTTAACCTTGC
66 AATGAGAAAA-CTTGTTCAACCTTGC
* *
1115154 ATCCACATTTCCAGTGG-TAAATTCATAATAAGAAGAACTCATCCGACAAGGGAGAAGAAGTTCA
1 ATCAACATTTCCAGTGGAT-AATTCATAATGAGAAGAACTCATCCGACAAGGGAGAAGAAGTTCA
*
1115218 TAATGAGAAAAACTTGTTCAAGCTTGC
65 TAATGAG-AAAACTTGTTCAACCTTGC
** * *
1115245 ATCAACATTTCCAGTGGATTGTTCATAATGAGAATAACTCATCCAACAAGGGAGAAGAAGTTCAT
1 ATCAACATTTCCAGTGGATAATTCATAATGAGAAGAACTCATCCGACAAGGGAGAAGAAGTTCAT
*
1115310 AATAAGAAGAACTTGTTCAACCTT
66 AATGAGAA-AACTTGTTCAACCTT
1115334 AGCTCGTTTC
Statistics
Matches: 159, Mismatches: 17, Indels: 8
0.86 0.09 0.04
Matches are distributed among these distances:
90 2 0.01
91 152 0.96
92 5 0.03
ACGTcount: A:0.38, C:0.17, G:0.20, T:0.25
Consensus pattern (90 bp):
ATCAACATTTCCAGTGGATAATTCATAATGAGAAGAACTCATCCGACAAGGGAGAAGAAGTTCAT
AATGAGAAAACTTGTTCAACCTTGC
Found at i:1127692 original size:21 final size:22
Alignment explanation
Indices: 1127657--1127702 Score: 67
Period size: 21 Copynumber: 2.1 Consensus size: 22
1127647 AACTACCTTG
* *
1127657 AAAGTATAACAACATATAACAT
1 AAAGTATAAAAACATAAAACAT
1127679 AAAGT-TAAAAACATAAAACAT
1 AAAGTATAAAAACATAAAACAT
1127700 AAA
1 AAA
1127703 AAAAGCATTC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 17 0.77
22 5 0.23
ACGTcount: A:0.65, C:0.11, G:0.04, T:0.20
Consensus pattern (22 bp):
AAAGTATAAAAACATAAAACAT
Found at i:1139376 original size:22 final size:22
Alignment explanation
Indices: 1139326--1139376 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 22
1139316 GTATACAAAC
* * *
1139326 TTGAAGAGTTAGGACATAGTGT
1 TTGAAGTGTAAGGACATAGAGT
*
1139348 TTGAAGTGTAAGGATATAGAGT
1 TTGAAGTGTAAGGACATAGAGT
1139370 TTGAAGT
1 TTGAAGT
1139377 AGGAAATAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.33, C:0.02, G:0.31, T:0.33
Consensus pattern (22 bp):
TTGAAGTGTAAGGACATAGAGT
Found at i:1142342 original size:2 final size:2
Alignment explanation
Indices: 1142337--1142394 Score: 116
Period size: 2 Copynumber: 29.0 Consensus size: 2
1142327 ACTCTGTATG
1142337 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1142379 AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT
1142395 TTATGATTAT
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 56 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1144609 original size:14 final size:14
Alignment explanation
Indices: 1144555--1144623 Score: 68
Period size: 14 Copynumber: 4.8 Consensus size: 14
1144545 AAGAAAAACG
1144555 AAAATA-AATAAAT
1 AAAATATAATAAAT
* *
1144568 AAAAAATGAAAAAAT
1 AAAATAT-AATAAAT
*
1144583 GAAAATGAAAATAAAT
1 -AAAAT-ATAATAAAT
1144599 AAAATATAATAAAT
1 AAAATATAATAAAT
*
1144613 AATATATAATA
1 AAAATATAATA
1144624 CTATACTATA
Statistics
Matches: 45, Mismatches: 7, Indels: 7
0.76 0.12 0.12
Matches are distributed among these distances:
13 5 0.11
14 18 0.40
15 11 0.24
16 10 0.22
17 1 0.02
ACGTcount: A:0.72, C:0.00, G:0.04, T:0.23
Consensus pattern (14 bp):
AAAATATAATAAAT
Found at i:1144676 original size:26 final size:26
Alignment explanation
Indices: 1144644--1144732 Score: 178
Period size: 26 Copynumber: 3.4 Consensus size: 26
1144634 TAATATGTAA
1144644 ATATATATTTTCAAAAACTATATATT
1 ATATATATTTTCAAAAACTATATATT
1144670 ATATATATTTTCAAAAACTATATATT
1 ATATATATTTTCAAAAACTATATATT
1144696 ATATATATTTTCAAAAACTATATATT
1 ATATATATTTTCAAAAACTATATATT
1144722 ATATATATTTT
1 ATATATATTTT
1144733 TTCAAAATGT
Statistics
Matches: 63, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 63 1.00
ACGTcount: A:0.45, C:0.07, G:0.00, T:0.48
Consensus pattern (26 bp):
ATATATATTTTCAAAAACTATATATT
Found at i:1144749 original size:39 final size:39
Alignment explanation
Indices: 1144703--1144955 Score: 308
Period size: 39 Copynumber: 6.6 Consensus size: 39
1144693 ATTATATATA
1144703 TTTTCAAAAACTATATATTATATATATTTTTTCAAAATG
1 TTTTCAAAAACTATATATTATATATATTTTTTCAAAATG
* *
1144742 TTTTCAAAAACTATATAGTATATATA--TTTTCAAAATTA
1 TTTTCAAAAACTATATATTATATATATTTTTTCAAAA-TG
1144780 TTTTCAAAAAC--TATATTATATATATGTTTTT-AAAATG
1 TTTTCAAAAACTATATATTATATATAT-TTTTTCAAAATG
*
1144817 TTTTCAAAAACTATATATTATATATA--TTTTCAAAATA
1 TTTTCAAAAACTATATATTATATATATTTTTTCAAAATG
* * *
1144854 TTTTTAAAAACTATATATTATATATATGTTTTCAAAACG
1 TTTTCAAAAACTATATATTATATATATTTTTTCAAAATG
*** *
1144893 TTTTTTTAAACTATATATTATATATATTCTTTCAAAAT-
1 TTTTCAAAAACTATATATTATATATATTTTTTCAAAATG
*
1144931 TTTAT-AAAAAATAATATATTATATA
1 TTT-TCAAAAACT-ATATATTATATA
1144956 CTATATATTT
Statistics
Matches: 187, Mismatches: 16, Indels: 22
0.83 0.07 0.10
Matches are distributed among these distances:
36 16 0.09
37 51 0.27
38 23 0.12
39 97 0.52
ACGTcount: A:0.43, C:0.07, G:0.02, T:0.48
Consensus pattern (39 bp):
TTTTCAAAAACTATATATTATATATATTTTTTCAAAATG
Found at i:1150033 original size:17 final size:17
Alignment explanation
Indices: 1150013--1150071 Score: 59
Period size: 17 Copynumber: 3.4 Consensus size: 17
1150003 GTATTGAACG
1150013 AAAGAAAATTGAATTCA
1 AAAGAAAATTGAATTCA
*
1150030 AAAGAAAAGTACT-AA-ACA
1 AAAGAAAA-T--TGAATTCA
*
1150048 AAAGAAAATTGAGTTCA
1 AAAGAAAATTGAATTCA
1150065 AAAGAAA
1 AAAGAAA
1150072 TGAAACAAGA
Statistics
Matches: 34, Mismatches: 3, Indels: 10
0.72 0.06 0.21
Matches are distributed among these distances:
15 1 0.03
16 1 0.03
17 18 0.53
18 11 0.32
19 2 0.06
20 1 0.03
ACGTcount: A:0.63, C:0.07, G:0.14, T:0.17
Consensus pattern (17 bp):
AAAGAAAATTGAATTCA
Found at i:1156427 original size:33 final size:33
Alignment explanation
Indices: 1156341--1156429 Score: 90
Period size: 33 Copynumber: 2.7 Consensus size: 33
1156331 CACTACAAGT
* * * *
1156341 TGCTTGAATCATACCATGTTACCCTAATCAAGT
1 TGCTCGAATCATACCATGCTACCCTAATAAAGC
* * *
1156374 TGCTCGAACCA-AGTCTTGCTACCCTAATAAAGC
1 TGCTCGAATCATA-CCATGCTACCCTAATAAAGC
*
1156407 TGCTCGAATCATACCCTGCTACC
1 TGCTCGAATCATACCATGCTACC
1156430 AAGTTGCTCG
Statistics
Matches: 44, Mismatches: 10, Indels: 4
0.76 0.17 0.07
Matches are distributed among these distances:
32 1 0.02
33 42 0.95
34 1 0.02
ACGTcount: A:0.28, C:0.30, G:0.13, T:0.28
Consensus pattern (33 bp):
TGCTCGAATCATACCATGCTACCCTAATAAAGC
Found at i:1156547 original size:40 final size:40
Alignment explanation
Indices: 1156489--1156565 Score: 100
Period size: 40 Copynumber: 1.9 Consensus size: 40
1156479 CTGCTACTTC
1156489 GATAAAGTTGCTCAAATCATGACATGCTACCAAGTTTTTT
1 GATAAAGTTGCTCAAATCATGACATGCTACCAAGTTTTTT
* ** * * *
1156529 GATAAAGTTTCTGGAATCATGCCTTGTTACCAAGTTT
1 GATAAAGTTGCTCAAATCATGACATGCTACCAAGTTT
1156566 ACAAACCATA
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 31 1.00
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.36
Consensus pattern (40 bp):
GATAAAGTTGCTCAAATCATGACATGCTACCAAGTTTTTT
Found at i:1156697 original size:27 final size:27
Alignment explanation
Indices: 1156664--1156750 Score: 86
Period size: 27 Copynumber: 3.0 Consensus size: 27
1156654 AGTGTTAGGG
1156664 TAGCAAGGCATGGTTTGAGCAACTTGA
1 TAGCAAGGCATGGTTTGAGCAACTTGA
* * *
1156691 TAGCAAGGCATGATTCGAGCAACTTTATTAGGG
1 TAGCAAGGCATGGTTTGAGCAAC----TT--GA
1156724 TAGCAA-GCATGGTTTGAGCAACTTGA
1 TAGCAAGGCATGGTTTGAGCAACTTGA
1156750 T
1 T
1156751 TAGGGTAACA
Statistics
Matches: 48, Mismatches: 6, Indels: 13
0.72 0.09 0.19
Matches are distributed among these distances:
26 2 0.04
27 21 0.44
28 2 0.04
31 2 0.04
32 14 0.29
33 7 0.15
ACGTcount: A:0.30, C:0.15, G:0.28, T:0.28
Consensus pattern (27 bp):
TAGCAAGGCATGGTTTGAGCAACTTGA
Found at i:1156743 original size:32 final size:32
Alignment explanation
Indices: 1156658--1156780 Score: 114
Period size: 32 Copynumber: 4.0 Consensus size: 32
1156648 ACTTGTAGTG
* *
1156658 TTAGGGTAGCAAGGCATGGTTTGAGCAAC---
1 TTAGGGTAGCAAGGCATGATTCGAGCAACTTA
*
1156687 TT--GATAGCAAGGCATGATTCGAGCAACTTTA
1 TTAGGGTAGCAAGGCATGATTCGAGCAAC-TTA
* *
1156718 TTAGGGTAGCAA-GCATGGTTTGAGCAACTTGA
1 TTAGGGTAGCAAGGCATGATTCGAGCAACTT-A
* **
1156750 TTAGGGTAACAAGATATGATTCGAGCAACTT
1 TTAGGGTAGCAAGGCATGATTCGAGCAACTT
1156781 GTAGTGTCCG
Statistics
Matches: 75, Mismatches: 11, Indels: 12
0.77 0.11 0.12
Matches are distributed among these distances:
27 22 0.29
29 2 0.03
31 4 0.05
32 26 0.35
33 21 0.28
ACGTcount: A:0.31, C:0.14, G:0.28, T:0.28
Consensus pattern (32 bp):
TTAGGGTAGCAAGGCATGATTCGAGCAACTTA
Found at i:1160806 original size:50 final size:50
Alignment explanation
Indices: 1160722--1160818 Score: 133
Period size: 50 Copynumber: 1.9 Consensus size: 50
1160712 TATGAAGATG
* *
1160722 CATCTTCCTTGGCGGAATGGTGATATGCTTGTTCATCTTGGAGCCAAAGT
1 CATCTTCCTTGGCCGAATCGTGATATGCTTGTTCATCTTGGAGCCAAAGT
* * *
1160772 CATCTTCCTTGGCCGAATCGTGTTGTG-TTGGTTCATCTTGGCGCCAA
1 CATCTTCCTTGGCCGAATCGTGATATGCTT-GTTCATCTTGGAGCCAA
1160819 TTTATTAATG
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
49 2 0.05
50 39 0.95
ACGTcount: A:0.16, C:0.23, G:0.26, T:0.35
Consensus pattern (50 bp):
CATCTTCCTTGGCCGAATCGTGATATGCTTGTTCATCTTGGAGCCAAAGT
Found at i:1167457 original size:46 final size:44
Alignment explanation
Indices: 1167375--1167462 Score: 106
Period size: 46 Copynumber: 1.9 Consensus size: 44
1167365 GATAAGGGTT
* * *
1167375 TCATGAGAAGGGTGATTTTTAATTTGCAGGCAATTTTCTTTTTGTC
1 TCATGAAAAGGGTGATTTTTAATTTGAAAG-AATTTT-TTTTTGTC
1167421 TCATGAAAAGGGTGATTTTGTAATTTGAATAG-ATTTTTTTTT
1 TCATGAAAAGGGTGATTTT-TAATTTGAA-AGAATTTTTTTTT
1167463 ACTTTTATGT
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
45 5 0.14
46 23 0.62
47 8 0.22
48 1 0.03
ACGTcount: A:0.25, C:0.07, G:0.20, T:0.48
Consensus pattern (44 bp):
TCATGAAAAGGGTGATTTTTAATTTGAAAGAATTTTTTTTTGTC
Found at i:1167668 original size:24 final size:23
Alignment explanation
Indices: 1167624--1167680 Score: 62
Period size: 24 Copynumber: 2.4 Consensus size: 23
1167614 AAATAATATG
* *
1167624 ATTAAATTTAAAAATCTAAAAATA
1 ATTAAATTAAAAAATCGAAAAA-A
1167648 ATTAAATTGAAAAAAT-GAAAAAA
1 ATTAAATT-AAAAAATCGAAAAAA
1167671 ATTATAATTA
1 ATTA-AATTA
1167681 TGTATAATGC
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
23 6 0.21
24 17 0.59
25 6 0.21
ACGTcount: A:0.63, C:0.02, G:0.04, T:0.32
Consensus pattern (23 bp):
ATTAAATTAAAAAATCGAAAAAA
Found at i:1167781 original size:16 final size:15
Alignment explanation
Indices: 1167758--1167796 Score: 53
Period size: 15 Copynumber: 2.6 Consensus size: 15
1167748 TAAATTTTAA
1167758 AAAATTAAAAAATAT
1 AAAATTAAAAAATAT
1167773 AAGAATT-AAAAATAT
1 AA-AATTAAAAAATAT
*
1167788 CAAATTAAA
1 AAAATTAAA
1167797 TGATACGTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
14 4 0.19
15 13 0.62
16 4 0.19
ACGTcount: A:0.69, C:0.03, G:0.03, T:0.26
Consensus pattern (15 bp):
AAAATTAAAAAATAT
Found at i:1168690 original size:30 final size:30
Alignment explanation
Indices: 1168627--1168692 Score: 78
Period size: 30 Copynumber: 2.2 Consensus size: 30
1168617 AGAACTGGAA
* * * *
1168627 GAACCGGTTGAAAATCGGGAAAATCGGGGT
1 GAACCGGCTGAAAACCGGCAAAACCGGGGT
**
1168657 GAACCGGCTGAAAACCGGCAAAACCGGTTT
1 GAACCGGCTGAAAACCGGCAAAACCGGGGT
1168687 GAACCG
1 GAACCG
1168693 CCGGTTCACT
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.33, C:0.21, G:0.32, T:0.14
Consensus pattern (30 bp):
GAACCGGCTGAAAACCGGCAAAACCGGGGT
Found at i:1173630 original size:41 final size:41
Alignment explanation
Indices: 1173579--1173658 Score: 124
Period size: 41 Copynumber: 2.0 Consensus size: 41
1173569 GGCAATCTCG
1173579 TGTTTGTTTCACGTAATTCGTTTTTCGAAAAATATTTTCCT
1 TGTTTGTTTCACGTAATTCGTTTTTCGAAAAATATTTTCCT
* * * *
1173620 TGTTTGTTTCACGTAATTCTTTTTTTGGAAAATGTTTTC
1 TGTTTGTTTCACGTAATTCGTTTTTCGAAAAATATTTTC
1173659 TAGTGTTTGG
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 35 1.00
ACGTcount: A:0.20, C:0.12, G:0.14, T:0.54
Consensus pattern (41 bp):
TGTTTGTTTCACGTAATTCGTTTTTCGAAAAATATTTTCCT
Found at i:1173666 original size:42 final size:42
Alignment explanation
Indices: 1173578--1173667 Score: 121
Period size: 41 Copynumber: 2.2 Consensus size: 42
1173568 AGGCAATCTC
1173578 GTGTTTGTTTCACGTAATTCGTTTTTCGAAAAATATTTTCCT
1 GTGTTTGTTTCACGTAATTCGTTTTTCGAAAAATATTTTCCT
* * * *
1173620 -TGTTTGTTTCACGTAATTCTTTTTTTGGAAAATGTTTT-CT
1 GTGTTTGTTTCACGTAATTCGTTTTTCGAAAAATATTTTCCT
1173660 AGTGTTTG
1 -GTGTTTG
1173668 GTTGAAGGAA
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
40 2 0.05
41 34 0.81
42 6 0.14
ACGTcount: A:0.19, C:0.11, G:0.17, T:0.53
Consensus pattern (42 bp):
GTGTTTGTTTCACGTAATTCGTTTTTCGAAAAATATTTTCCT
Found at i:1174375 original size:182 final size:181
Alignment explanation
Indices: 1173991--1174843 Score: 1192
Period size: 182 Copynumber: 4.7 Consensus size: 181
1173981 TGTCGGTTTA
* * * * *
1173991 TGTCGATACTTTATAAAAATGTATCAATCCACATCAATA-ATATAGGTAAAAATATGAGAAAACC
1 TGTCGATACTTTATAAAAATGTATCGATCCACAACGATATA-ACAGGTAAAAATATGAAAAAACC
* * * *
1174055 GATCTCGAAAAGACAAAACCGGTAAAGCGGTACTGGATATATTGAAAGTGTCGATAC-TT-ATA-
65 GGTCTCGAAAAGACAAAACCGGTAAAGAGCTAC-CGATATATTGAAAGTGTCGATACTTTAATAT
* *
1174117 AAGTATCGATACTTTGTGAATTTAAAAGAGAAGCAGTTTTAGTGCCTATAAAG
129 AAGTATCGACACTTTGTGAATTTAAAAGAGAAGCAGTTTTAGCGCCTATAAAG
* * *
1174170 TGTCGATACTTTATAAAAATGTATTGATCCACAACGATATAACAGGTAAAAATATGACAAAATCG
1 TGTCGATACTTTATAAAAATGTATCGATCCACAACGATATAACAGGTAAAAATATGAAAAAACCG
* * * * *
1174235 GTCTTGAAAAGAAAAAATCGGTAAAGTGCTACCAGATATATTGAAAGTGCCGATACTTTAATATA
66 GTCTCGAAAAGACAAAACCGGTAAAGAGCTACC-GATATATTGAAAGTGTCGATACTTTAATATA
1174300 AGTATCGACACTTTGTGAATTTAAAAGAGAAGCAGTTTTAGCGCCTATAAAG
130 AGTATCGACACTTTGTGAATTTAAAAGAGAAGCAGTTTTAGCGCCTATAAAG
* * *
1174352 TGTCGATACTTTATAACAATGTATCGATCCAAAACGATATAACAGGTAAAAATATGACAAAACCG
1 TGTCGATACTTTATAAAAATGTATCGATCCACAACGATATAACAGGTAAAAATATGAAAAAACCG
* * * *
1174417 GTCTCCAAAGGACAAAACCGGTATAGAGCGACCGAATATATTGAAAGTGTCGATACTTTAATATA
66 GTCTCGAAAAGACAAAACCGGTAAAGAGCTACCG-ATATATTGAAAGTGTCGATACTTTAATATA
*
1174482 AGTATCGACACTTTGTGAATTTAAAAGAGAAGAAGTTTTAGCGCCTATAAAG
130 AGTATCGACACTTTGTGAATTTAAAAGAGAAGCAGTTTTAGCGCCTATAAAG
* * *
1174534 TGTCGATACTTTATAACAATGTATCGATCAACAACGATATAACATGTAAAAATATGAAAAAACCG
1 TGTCGATACTTTATAAAAATGTATCGATCCACAACGATATAACAGGTAAAAATATGAAAAAACCG
* * * * * **
1174599 ATCTCTAAAGGACAAACCCGGTATAGAGAGACCAGATATATTGAAAGTGTCGATACTTTAATATA
66 GTCTCGAAAAGACAAAACCGGTAAAGAGCTACC-GATATATTGAAAGTGTCGATACTTTAATATA
*
1174664 AATATCGACACTTTGTGAATTTAAAAGAGAAGCAGTTTTAGCGCCTATAAAG
130 AGTATCGACACTTTGTGAATTTAAAAGAGAAGCAGTTTTAGCGCCTATAAAG
* * * *
1174716 TGTCGATACTTTATAAAATTGTATCGATCCATAACGATATAACATGTAAAAATATGAAAAAACCA
1 TGTCGATACTTTATAAAAATGTATCGATCCACAACGATATAACAGGTAAAAATATGAAAAAACCG
* * * ** *
1174781 GTCTCGAAATGAAAAAACCGATAAAGCTCTACCGAATACATTGAAAGTGTCGATACTTTAATA
66 GTCTCGAAAAGACAAAACCGGTAAAGAGCTACCG-ATATATTGAAAGTGTCGATACTTTAATA
1174844 AGTACGCATA
Statistics
Matches: 608, Mismatches: 58, Indels: 13
0.90 0.09 0.02
Matches are distributed among these distances:
179 103 0.17
180 3 0.00
181 5 0.01
182 496 0.82
183 1 0.00
ACGTcount: A:0.42, C:0.14, G:0.17, T:0.27
Consensus pattern (181 bp):
TGTCGATACTTTATAAAAATGTATCGATCCACAACGATATAACAGGTAAAAATATGAAAAAACCG
GTCTCGAAAAGACAAAACCGGTAAAGAGCTACCGATATATTGAAAGTGTCGATACTTTAATATAA
GTATCGACACTTTGTGAATTTAAAAGAGAAGCAGTTTTAGCGCCTATAAAG
Found at i:1177737 original size:24 final size:24
Alignment explanation
Indices: 1177686--1177738 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 24
1177676 TTTCATATGT
* * *
1177686 AATTGGAGTTTGAATTTAAATTTC
1 AATTTGAGTTTGAATTTAAATATA
* *
1177710 AATTTGAGTTTGAGTTTTAATATA
1 AATTTGAGTTTGAATTTAAATATA
1177734 AATTT
1 AATTT
1177739 CGGCTCCACT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.34, C:0.02, G:0.15, T:0.49
Consensus pattern (24 bp):
AATTTGAGTTTGAATTTAAATATA
Found at i:1179506 original size:178 final size:179
Alignment explanation
Indices: 1179202--1179530 Score: 513
Period size: 178 Copynumber: 1.8 Consensus size: 179
1179192 AAAATAGCTA
*
1179202 TACATAATGTATCGACACTTGTAGAATTTGTGTCGATACTTTTTGTCCAAAATGAATGCCAAAAA
1 TACATAATGTATCAACACTTGTAGAATTTGTGTCGATACTTTTTGTCCAAAATGAATGCCAAAAA
* * *
1179267 GTGGTGCATGCATACAATGTCGATACATTTTTAAAAAGTATCGATCCCAAAAACATCGAAACCAA
66 GTGGTGAACGCATACAATGTCGATACATTTATAAAAAGTATCGATCCCAAAAACATCGAAACCAA
1179332 TAATTATAATGTAATAGGTAATTTTGTAATTTTTATGTGAGAATAGGTC
131 TAATTATAATGTAATAGGTAATTTTGTAATTTTTATGTGAGAATAGGTC
* * *
1179381 TACATAATGTGA-CAACACTT-TTGAATTTTGTGTCGATACTTTTTGTCCAGAATGAATGCCCAA
1 TACATAATGT-ATCAACACTTGTAGAA-TTTGTGTCGATACTTTTTGTCCAAAATGAATGCCAAA
*
1179444 AA-TGGTGAACGCATA-AAGTGTCGATACATTTATAAAAAGTATCGATCCCAGAAACATCGAAAC
64 AAGTGGTGAACGCATACAA-TGTCGATACATTTATAAAAAGTATCGATCCCAAAAACATCGAAAC
**
1179507 CCTTAATTATAATGTAATAGGTAA
128 CAATAATTATAATGTAATAGGTAA
1179531 ATTTACAATG
Statistics
Matches: 137, Mismatches: 10, Indels: 7
0.89 0.06 0.05
Matches are distributed among these distances:
177 2 0.01
178 80 0.58
179 54 0.39
180 1 0.01
ACGTcount: A:0.37, C:0.15, G:0.16, T:0.32
Consensus pattern (179 bp):
TACATAATGTATCAACACTTGTAGAATTTGTGTCGATACTTTTTGTCCAAAATGAATGCCAAAAA
GTGGTGAACGCATACAATGTCGATACATTTATAAAAAGTATCGATCCCAAAAACATCGAAACCAA
TAATTATAATGTAATAGGTAATTTTGTAATTTTTATGTGAGAATAGGTC
Found at i:1179716 original size:200 final size:200
Alignment explanation
Indices: 1179362--1179797 Score: 608
Period size: 200 Copynumber: 2.2 Consensus size: 200
1179352 ATTTTGTAAT
* * *
1179362 TTTTATGTGAGAATAGGTCTACATAATGTGA-CAACACTTTTGAATTTTGTGTCGATACTTTTTG
1 TTTTATGAGAGAATAGGTCTACATAATGT-ATCGACACTTTGGAATTTTGTGTCGATACTTTTTG
* * *
1179426 TCCAGAATGAATGCCCAAAATGGTGAACGCATAAAGTGTCGATACATTTATAAAAAGTATCGATC
65 TCCAAAATCAATGCCCAAAAGGGTGAACGCATAAAGTGTCGATACATTTATAAAAAGTATCGATC
* * * * *
1179491 CCAGAAACATCGAAACCCTTAATTATAATGTAATAGGTAAATTTACAATGTAACCTATATAACTA
130 CCAAAAACATCAAAACCCATAATTATAATGTAATAGGTAAATTTACAATGTAACCGATATAAATA
1179556 TACCAG
195 TACCAG
1179562 TTTTATGAGAGAATAGGTCTACATAATGTATCGACACTTGTGGAA-TTTGTGTCGATACTTTTTG
1 TTTTATGAGAGAATAGGTCTACATAATGTATCGACACTT-TGGAATTTTGTGTCGATACTTTTTG
* * * *
1179626 TCTAAAATCAATG-CCAAAAGGGTTGCACGCATAAAGTGTCGATGCATTTTTAAAAAGTATCGAT
65 TCCAAAATCAATGCCCAAAAGGG-TGAACGCATAAAGTGTCGATACATTTATAAAAAGTATCGAT
** *
1179690 CCCAAAAACATCAAAACTGATAATTATAATGTAATAGGTAAATTTATAATGTAACCGATATAAAT
129 CCCAAAAACATCAAAACCCATAATTATAATGTAATAGGTAAATTTACAATGTAACCGATATAAAT
* *
1179755 TTACCGG
194 ATACCAG
* * **
1179762 TTTTATAAGAAAATAGGTGAACATAATGTATCGACA
1 TTTTATGAGAGAATAGGTCTACATAATGTATCGACA
1179798 AGTTTTAGAT
Statistics
Matches: 209, Mismatches: 24, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
199 9 0.04
200 196 0.94
201 4 0.02
ACGTcount: A:0.38, C:0.14, G:0.16, T:0.32
Consensus pattern (200 bp):
TTTTATGAGAGAATAGGTCTACATAATGTATCGACACTTTGGAATTTTGTGTCGATACTTTTTGT
CCAAAATCAATGCCCAAAAGGGTGAACGCATAAAGTGTCGATACATTTATAAAAAGTATCGATCC
CAAAAACATCAAAACCCATAATTATAATGTAATAGGTAAATTTACAATGTAACCGATATAAATAT
ACCAG
Found at i:1193304 original size:20 final size:21
Alignment explanation
Indices: 1193271--1193309 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
1193261 TTCACTCGAT
*
1193271 AAATCTCACTATTGAAATTTA
1 AAATCTAACTATTGAAATTTA
*
1193292 AAATCTAAC-ATTGGAATT
1 AAATCTAACTATTGAAATT
1193310 ATCAAAGATC
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 8 0.50
21 8 0.50
ACGTcount: A:0.44, C:0.13, G:0.08, T:0.36
Consensus pattern (21 bp):
AAATCTAACTATTGAAATTTA
Found at i:1193657 original size:14 final size:14
Alignment explanation
Indices: 1193638--1193667 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
1193628 TTCTCTCGAC
1193638 ATATAAAAATATCT
1 ATATAAAAATATCT
1193652 ATATAAAAATATCT
1 ATATAAAAATATCT
1193666 AT
1 AT
1193668 TTAATATCTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.57, C:0.07, G:0.00, T:0.37
Consensus pattern (14 bp):
ATATAAAAATATCT
Found at i:1193675 original size:11 final size:11
Alignment explanation
Indices: 1193659--1193684 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
1193649 TCTATATAAA
1193659 AATATCTATTT
1 AATATCTATTT
1193670 AATATCTATTT
1 AATATCTATTT
1193681 AATA
1 AATA
1193685 ATTGAGAGAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.42, C:0.08, G:0.00, T:0.50
Consensus pattern (11 bp):
AATATCTATTT
Found at i:1193944 original size:3 final size:3
Alignment explanation
Indices: 1193936--1193973 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
1193926 CGTCCCGTTT
1193936 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1193974 TTCAGGCTTT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:1196286 original size:131 final size:131
Alignment explanation
Indices: 1195963--1196323 Score: 467
Period size: 130 Copynumber: 2.8 Consensus size: 131
1195953 CGATATTGAG
* * * * *
1195963 AATAGTAATATCTTTTAATTTCG-TTGGAGTAATTAATCACTT-CTTTAAGGCATAAAAGGTCAT
1 AATAGTAATATCTTTTCATTTCGATTGGAGTAATAAATGA-TTGCTTTAAGGTATGAAAGGTCAT
* * * * * * * *
1196026 TTATTCTCGATTGTAAATAATTCGATATTATCATTCTCTCTCGAATTAATATTGATTTTTAATAT
65 TTATTCTCGATTGGAAATAATTAGATATTATCGTTTTCACTCGAATCAATATTGAATTTTAAGAT
*
1196091 GG
130 GA
* * * * *
1196093 AATAGT-GTATCTCTTCATTTCTATTGGAGCAATAAATGATTGCTTTAAGGTATGAGAGGTCATT
1 AATAGTAATATCTTTTCATTTCGATTGGAGTAATAAATGATTGCTTTAAGGTATGAAAGGTCATT
* * * *
1196157 TATTCTCAATTGGAAATCATTAGATATTATTGTTTTCACTCGAATCGATATTGAATTTTAAGATG
66 TATTCTCGATTGGAAATAATTAGATATTATCGTTTTCACTCGAATCAATATTGAATTTTAAGATG
1196222 A
131 A
* *
1196223 AATAGTAATATCTTTTCATTTCGATTGAAGTAATAAATGATTGTTTTAAGGTATGAAAGGTCATT
1 AATAGTAATATCTTTTCATTTCGATTGGAGTAATAAATGATTGCTTTAAGGTATGAAAGGTCATT
1196288 TATTCTCGATTGGAAATAATTAGATATTATCGTTTT
66 TATTCTCGATTGGAAATAATTAGATATTATCGTTTT
1196324 TCTCTCTTAA
Statistics
Matches: 195, Mismatches: 33, Indels: 5
0.84 0.14 0.02
Matches are distributed among these distances:
129 14 0.07
130 97 0.50
131 84 0.43
ACGTcount: A:0.32, C:0.10, G:0.15, T:0.43
Consensus pattern (131 bp):
AATAGTAATATCTTTTCATTTCGATTGGAGTAATAAATGATTGCTTTAAGGTATGAAAGGTCATT
TATTCTCGATTGGAAATAATTAGATATTATCGTTTTCACTCGAATCAATATTGAATTTTAAGATG
A
Found at i:1203163 original size:41 final size:41
Alignment explanation
Indices: 1203077--1203163 Score: 113
Period size: 41 Copynumber: 2.1 Consensus size: 41
1203067 GGGCCAGCAG
* * *
1203077 TAAGTCTTTCGAGCATGATGCTTAAATTCTTCGGGTCATCTA
1 TAAGTCTTTCGAGCAAGATGC-TAAATTCTTCGGGCCATCCA
*
1203119 TAAGTCTTTCGAGCAAGATGAC-AAGTTCTTCGGGCCATCCA
1 TAAGTCTTTCGAGCAAGATG-CTAAATTCTTCGGGCCATCCA
1203160 TAAG
1 TAAG
1203164 ACCTTTGGGC
Statistics
Matches: 40, Mismatches: 4, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
41 20 0.50
42 19 0.47
43 1 0.03
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (41 bp):
TAAGTCTTTCGAGCAAGATGCTAAATTCTTCGGGCCATCCA
Found at i:1203467 original size:233 final size:230
Alignment explanation
Indices: 1203053--1204100 Score: 1115
Period size: 233 Copynumber: 4.6 Consensus size: 230
1203043 AGTTTCTTAC
*
1203053 TTGGTAAGTCCTTTGGGCCAGCAGTAAGTCTTTCGAGCATGATGCTTAAATTC-TTCGGGTCATC
1 TTGGTAAGTCCTTT-GGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAA-TCATTCGGGTCATC
* * * * * * *
1203117 TATAAGTCTTTCGAGCAAGATGACAAGTTCTTCGGGCCATCCATAAGACCTTTGGGCAGGATATT
64 TGTAAGTCTTTCGAGCAAGATGATAAGTCCTTCGGGCCATCCATAAGACCTTCGAGCAAGATGTT
** * * *
1203182 TTCCCATGTTTTTTGAAAAATGAGAAAAGTTTATCATTTAAATATGAAAATTGAAATTTTTGAAA
129 TTAACATGTCTTTTGAAAAATAAGAAAAGTTTATCATTTAAATCT-AAAATTGAAA-TTTTGAAA
1203247 AGTAAGAAAAGTTTCTTACCTAGTAAACTATTTCAAAAA
192 AGTAAGAAAAGTTTCTTACCTAGTAAACTATTTCAAAAA
* *
1203286 TTGGTAAGTCCTTCTGGCCATCAGTAAGTCTTTCGAGTATGATGCTTAAATCATTCAGGTCATCT
1 TTGGTAAGTCCTT-TGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCATTCGGGTCATCT
* * ** *
1203351 GTAAGTCTTTCGAACAAGATGATAATTTTTTCGGGCCATCCATAAGACCTTCTAGCAAGATGTTT
65 GTAAGTCTTTCGAGCAAGATGATAAGTCCTTCGGGCCATCCATAAGACCTTCGAGCAAGATGTTT
* * *
1203416 TAACGTGTCTTTTGAAAAATAAGAAAAGTTTCTCATTTAAATCTTAAAATTGAAATTTTTGTAAA
130 TAACATGTCTTTTGAAAAATAAGAAAAGTTTATCATTTAAATC-TAAAATTGAAA-TTTTGAAAA
*
1203481 GTAAGAAAAGTTTCTTACCTAGTAAACTATTTCCAAAA
193 GTAAGAAAAGTTTCTTACCTAGTAAACTATTTCAAAAA
* * *
1203519 TTGGTAAGTCATTTGGTCCATCAGTAAGTCTTTCGAGCATGATGCTAAAAT-ATTTCAGGTCATC
1 TTGGTAAGTCCTTTGG-CCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCA-TTCGGGTCATC
* * *
1203583 TGTAAGTATTTCGAGCAAGATGATAAGTCCTTCAGGCCATCCATAAGACCTTCGGGC-AGAATGT
64 TGTAAGTCTTTCGAGCAAGATGATAAGTCCTTCGGGCCATCCATAAGACCTTCGAGCAAG-ATGT
* * * ** * * *
1203647 TTTCACACGTTTTTTTTAAAA-AAGAAAAAGTTTCTCATATTTAATCTGAAATTGAAATTTTGAA
128 TTTAACATGTCTTTTGAAAAATAAG-AAAAGTTTATCAT-TTAAATCTAAAATTGAAATTTTGAA
* * * * *
1203711 AATTAAGAAAATTTTCTTACATAGTAAATTATTTCTAAAA
191 AAGTAAGAAAAGTTTCTTACCTAGTAAACTATTTCAAAAA
* * * *
1203751 TTGGTAAGTCCTTCAGGCTATCAGTAAGTCTTTCCAGCATGATGCTTAAATCCTTCGGGTCATCT
1 TTGGTAAGTCCTT-TGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCATTCGGGTCATCT
* ** * * * ** * * *
1203816 GTAAGTTTTTTTAGTAAGATGAAAAGTCCTTTGAACTACCCATAAGACCTTCGAGCAGGATGTTT
65 GTAAGTCTTTCGAGCAAGATGATAAGTCCTTCGGGCCATCCATAAGACCTTCGAGCAAGATGTTT
* * * * * * *
1203881 TCACATGTCTCTCGAAAAATGAGAAAACTTTATCGTTTAAATC------TGAAA-ATTGAAAAGT
130 TAACATGTCTTTTGAAAAATAAGAAAAGTTTATCATTTAAATCTAAAATTGAAATTTTGAAAAGT
* **
1203939 AAGAAAAGTTTCTTACCTAGTAAACTATAT-ACATGA
195 AAGAAAAGTTTCTTACCTAGTAAACTATTTCA-AAAA
* * * * *
1203975 TTGGTAAGTTCTTTGTGCCATCATTAAGTC-TTCAAACATGATGCTTAAATCTTTCGGGTCATCT
1 TTGGTAAGTCCTTTG-GCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCATTCGGGTCATCT
* * * * **
1204039 GT-A-TCTTTCGAGCAAG-TGTTAAGTCTTTC-GGTCATCTATAAGTTCTTCGAG-AAGGATGTT
65 GTAAGTCTTTCGAGCAAGATGATAAGTCCTTCGGGCCATCCATAAGACCTTCGAGCAA-GATGTT
1204099 TT
129 TT
1204101 CGCATGATTT
Statistics
Matches: 689, Mismatches: 111, Indels: 44
0.82 0.13 0.05
Matches are distributed among these distances:
218 1 0.00
219 22 0.03
220 9 0.01
221 9 0.01
222 1 0.00
223 34 0.05
224 60 0.09
225 5 0.01
231 6 0.01
232 179 0.26
233 355 0.52
234 8 0.01
ACGTcount: A:0.32, C:0.16, G:0.17, T:0.35
Consensus pattern (230 bp):
TTGGTAAGTCCTTTGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCATTCGGGTCATCTG
TAAGTCTTTCGAGCAAGATGATAAGTCCTTCGGGCCATCCATAAGACCTTCGAGCAAGATGTTTT
AACATGTCTTTTGAAAAATAAGAAAAGTTTATCATTTAAATCTAAAATTGAAATTTTGAAAAGTA
AGAAAAGTTTCTTACCTAGTAAACTATTTCAAAAA
Found at i:1203932 original size:465 final size:454
Alignment explanation
Indices: 1203053--1204080 Score: 1237
Period size: 465 Copynumber: 2.2 Consensus size: 454
1203043 AGTTTCTTAC
* *
1203053 TTGGTAAGTCCTTTGGGCCAGCAGTAAGTCTTTCGAGCATGATGCTTAAATTCTTCGGGTCATCT
1 TTGGTAAGT-CTTTGGTCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATT-TTCGGGTCATCT
* * * * *
1203118 ATAAGTCTTTCGAGCAAGATGACAAGTTCTTCGGGCCATCCATAAGACCTTTGGGCAGGATATTT
64 GTAAGTCTTTCGAGCAAGATGATAAGTCCTTC-GGCCATCCATAAGACCTTCGGGCAGAATATTT
* * *
1203183 TCCCATGTTTTTTGAAAAATGAGAAAAGTTTATCATTTAAATATGAAAATTGAAATTTTTGAAAA
128 TCACACGTTTTTTGAAAAAAGAGAAAAGTTTATCATTTAAATATGAAAATTGAAATTTTTGAAAA
* *
1203248 GTAAGAAAAGTTTCTTACCTAGTAAACTATTTCAAAAATTGGTAAGTCCTTCTGGCCATCAGTAA
193 GTAAGAAAAGTTTCTTACATAGTAAACTATTTCAAAAATTGGTAAGTCCTTCAGGCCATCAGTAA
* * * *
1203313 GTCTTTCGAGTATGATGCTTAAATCATTCAGGTCATCTGTAAGTCTTTCGAACAAGATGATAATT
258 GTCTTTCCAGCATGATGCTTAAATCATTCAGGTCATCTGTAAGTCTTTCGAACAAGATGAAAATC
* ** * * * * *
1203378 TTTTCGGGCCATCCATAAGACCTTCTAGCAAGATGTTTTAACGTGTCTTTTGAAAAATAAGAAAA
323 CTTTCGAACCACCCATAAGACCTTCGAGCAAGATGTTTTAACATGTCTCTCGAAAAATAAGAAAA
* * *
1203443 GTTTCTCATTTAAATCTTAAAATTGAAATTTTTGTAAAGTAAGAAAAGTTTCTTACCTAGTAAAC
388 CTTTATCATTTAAATCTGAAAATTG--A-------AAAGTAAGAAAAGTTTCTTACCTAGTAAAC
* *
1203508 TATTTCCAAAA
444 TATATACAAAA
* *
1203519 TTGGTAAGTCATTTGGTCCATCAGTAAGTCTTTCGAGCATGATGCTAAAATATTTCAGGTCATCT
1 TTGGTAAGTC-TTTGGTCCATCAGTAAGTCTTTCGAGCATGATGCTTAAAT-TTTCGGGTCATCT
* *
1203584 GTAAGTATTTCGAGCAAGATGATAAGTCCTTCAGGCCATCCATAAGACCTTCGGGCAGAATGTTT
64 GTAAGTCTTTCGAGCAAGATGATAAGTCCTTC-GGCCATCCATAAGACCTTCGGGCAGAATATTT
* * * *
1203649 TCACACGTTTTTTTTAAAAAAGA-AAAAGTTTCTCATATTTAATCTG-AAATTGAAA-TTTTGAA
128 TCACACG-TTTTTTGAAAAAAGAGAAAAGTTTATCAT-TTAAATATGAAAATTGAAATTTTTGAA
* * * * *
1203711 AATTAAGAAAATTTTCTTACATAGTAAATTATTTCTAAAATTGGTAAGTCCTTCAGGCTATCAGT
191 AAGTAAGAAAAGTTTCTTACATAGTAAACTATTTCAAAAATTGGTAAGTCCTTCAGGCCATCAGT
* * * ** **
1203776 AAGTCTTTCCAGCATGATGCTTAAATCCTTCGGGTCATCTGTAAGTTTTTTTAGTAAGATGAAAA
256 AAGTCTTTCCAGCATGATGCTTAAATCATTCAGGTCATCTGTAAGTCTTTCGAACAAGATGAAAA
* * * *
1203841 GTCCTTT-GAACTACCCATAAGACCTTCGAGCAGGATGTTTTCACATGTCTCTCGAAAAATGAGA
321 -TCCTTTCGAACCACCCATAAGACCTTCGAGCAAGATGTTTTAACATGTCTCTCGAAAAATAAGA
*
1203905 AAACTTTATCGTTTAAATCTGAAAATTGAAAAGTAAGAAAAGTTTCTTACCTAGTAAACTATATA
385 AAACTTTATCATTTAAATCTGAAAATTGAAAAGTAAGAAAAGTTTCTTACCTAGTAAACTATATA
**
1203970 CATGA
450 CAAAA
* * *
1203975 TTGGTAAGTTCTTT-GTGCCATCATTAAGTC-TTCAAACATGATGCTTAAATCTTTCGGGTCATC
1 TTGGTAAG-TCTTTGGT-CCATCAGTAAGTCTTTCGAGCATGATGCTTAAAT-TTTCGGGTCATC
* * * *
1204038 TGT-A-TCTTTCGAGCAAG-TGTTAAGTCTTTCGGTCATCTATAAG
63 TGTAAGTCTTTCGAGCAAGATGATAAGTCCTTCGGCCATCCATAAG
1204081 TTCTTCGAGA
Statistics
Matches: 487, Mismatches: 68, Indels: 29
0.83 0.12 0.05
Matches are distributed among these distances:
451 11 0.02
452 11 0.02
453 12 0.02
454 1 0.00
455 33 0.07
456 60 0.12
457 2 0.00
463 1 0.00
465 191 0.39
466 144 0.30
467 21 0.04
ACGTcount: A:0.32, C:0.16, G:0.17, T:0.35
Consensus pattern (454 bp):
TTGGTAAGTCTTTGGTCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATTTTCGGGTCATCTGT
AAGTCTTTCGAGCAAGATGATAAGTCCTTCGGCCATCCATAAGACCTTCGGGCAGAATATTTTCA
CACGTTTTTTGAAAAAAGAGAAAAGTTTATCATTTAAATATGAAAATTGAAATTTTTGAAAAGTA
AGAAAAGTTTCTTACATAGTAAACTATTTCAAAAATTGGTAAGTCCTTCAGGCCATCAGTAAGTC
TTTCCAGCATGATGCTTAAATCATTCAGGTCATCTGTAAGTCTTTCGAACAAGATGAAAATCCTT
TCGAACCACCCATAAGACCTTCGAGCAAGATGTTTTAACATGTCTCTCGAAAAATAAGAAAACTT
TATCATTTAAATCTGAAAATTGAAAAGTAAGAAAAGTTTCTTACCTAGTAAACTATATACAAAA
Found at i:1204625 original size:134 final size:134
Alignment explanation
Indices: 1204385--1204857 Score: 574
Period size: 134 Copynumber: 3.5 Consensus size: 134
1204375 TTTAATCTTC
* * ** * *
1204385 AGATTTGATGTTCCCTGAGTAACAACGGAATC-AGTCCGCCTCTATTAAATATTCCCTCG-AGAA
1 AGATTTGATATTCCCTGAGTAACAATGGAA-CAAGTATGCCTCTATTCAATCTTCCCT-GAAGAA
* * * *
1204448 CAATGGAATGAATCAACGTCCCCAGATCTGATTTTCCCTCAAGAAGAAGTAGAACATATCCAACT
64 CAGTGGAATGAATCAACGTCCTCAGATCTGATTTTCCCTCAAGAAGAAGCAGAACATATCCATCT
1204513 CTTTCA
129 CTTTCA
* * * * * *
1204519 AGATTCGATATTCCCTGAGTAACAATGGAATAAGTCTGCATCTATTCAATCTTCCTTGGAGAACA
1 AGATTTGATATTCCCTGAGTAACAATGGAACAAGTATGCCTCTATTCAATCTTCCCTGAAGAACA
* * *
1204584 GTGGAATGAATCAACGTGCTCAGATCTGATTTTCCCTCAAGAAGAAGCCGAACATATCCCTCTCT
66 GTGGAATGAATCAACGTCCTCAGATCTGATTTTCCCTCAAGAAGAAGCAGAACATATCCATCTCT
*
1204649 TTCT
131 TTCA
* *
1204653 AGATTTGATATTCCCTGAGTAACAATGGAACAAGTATGCCTCGATTCAATCTTCCCTGAAGAATA
1 AGATTTGATATTCCCTGAGTAACAATGGAACAAGTATGCCTCTATTCAATCTTCCCTGAAGAACA
* * * * * * * *
1204718 GTGGAATGAATAAATGTCCTCAGATTTGATTTTCCCTAAAAAAGAAGCGGAATAGATCCATCTCT
66 GTGGAATGAATCAACGTCCTCAGATCTGATTTTCCCTCAAGAAGAAGCAGAACATATCCATCTCT
1204783 TTCA
131 TTCA
* ** * * *
1204787 AGAATTGATATTCTTTGAGTAATAGTAGAACAAGTATGCCT-TGATTCAATCTTCCCTGAAGAAC
1 AGATTTGATATTCCCTGAGTAACAATGGAACAAGTATGCCTCT-ATTCAATCTTCCCTGAAGAAC
1204851 AGTGGAA
65 AGTGGAA
1204858 CAAGTCTTCC
Statistics
Matches: 292, Mismatches: 44, Indels: 6
0.85 0.13 0.02
Matches are distributed among these distances:
133 1 0.00
134 291 1.00
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.29
Consensus pattern (134 bp):
AGATTTGATATTCCCTGAGTAACAATGGAACAAGTATGCCTCTATTCAATCTTCCCTGAAGAACA
GTGGAATGAATCAACGTCCTCAGATCTGATTTTCCCTCAAGAAGAAGCAGAACATATCCATCTCT
TTCA
Found at i:1204871 original size:41 final size:41
Alignment explanation
Indices: 1204814--1204898 Score: 134
Period size: 41 Copynumber: 2.1 Consensus size: 41
1204804 AGTAATAGTA
*
1204814 GAACAAGTATGCCTTGATTCAATCTTCCCTGAAGAACAGTG
1 GAACAAGTATGCCTTGATTCAATCTTCCATGAAGAACAGTG
* * *
1204855 GAACAAGTCTTCCTTGATTTAATCTTCCATGAAGAACAGTG
1 GAACAAGTATGCCTTGATTCAATCTTCCATGAAGAACAGTG
1204896 GAA
1 GAA
1204899 TAAATCAACG
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.33, C:0.20, G:0.19, T:0.28
Consensus pattern (41 bp):
GAACAAGTATGCCTTGATTCAATCTTCCATGAAGAACAGTG
Found at i:1204959 original size:175 final size:175
Alignment explanation
Indices: 1204663--1205032 Score: 429
Period size: 175 Copynumber: 2.1 Consensus size: 175
1204653 AGATTTGATA
* * * *
1204663 TTCCCTG-AGTAACAATGGAACAAGTATGCCTCGATTCAATCTTCCCTGAAGAATAGTGGAATGA
1 TTCCCTGAAG-AACAGTGGAACAAGTATGCCTCGATTCAATCTTCCATGAAGAACAGTGGAATAA
* * * *
1204727 ATAAATGTCCTCAGATTTGATTTTCCCTAAAAAAGAAGCGGAATAGATCCATCTCTTTCAAGAAT
65 ATAAACGTCCTCAGATTTGATTTTCCCTAAAAAAGAAGAGAAACAGATCCATCTCTTTCAAGAAT
* ** *
1204792 TGATATTCTTTGAGTAATAGTAGAACAAGTATGCCTTGATTCAATC
130 TGAAATTCCCTGAGTAACAGTAGAACAAGTATGCCTTGATTCAATC
* * * *
1204838 TTCCCTGAAGAACAGTGGAACAAGTCTTCCTTGATTTAATCTTCCATGAAGAACAGTGGAATAAA
1 TTCCCTGAAGAACAGTGGAACAAGTATGCCTCGATTCAATCTTCCATGAAGAACAGTGGAATAAA
* * * * * * * *
1204903 TCAACGTCTTCATATTTGATTTTCCCTCAAGAAGAAGAGAAACATG-TCCCTCTCTTTTAAGATT
66 TAAACGTCCTCAGATTTGATTTTCCCTAAAAAAGAAGAGAAACA-GATCCATCTCTTTCAAGAAT
* * * *
1204967 TGAAATTCCCTGAGTAACAGTGGAACAATTCTTCCTTGATTCAATC
130 TGAAATTCCCTGAGTAACAGTAGAACAAGTATGCCTTGATTCAATC
** *
1205013 TTTACTGAAGAATAGTGGAA
1 TTCCCTGAAGAACAGTGGAA
1205033 TAAATTGACA
Statistics
Matches: 162, Mismatches: 31, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
175 159 0.98
176 3 0.02
ACGTcount: A:0.34, C:0.18, G:0.17, T:0.31
Consensus pattern (175 bp):
TTCCCTGAAGAACAGTGGAACAAGTATGCCTCGATTCAATCTTCCATGAAGAACAGTGGAATAAA
TAAACGTCCTCAGATTTGATTTTCCCTAAAAAAGAAGAGAAACAGATCCATCTCTTTCAAGAATT
GAAATTCCCTGAGTAACAGTAGAACAAGTATGCCTTGATTCAATC
Found at i:1204968 original size:309 final size:309
Alignment explanation
Indices: 1204520--1205155 Score: 762
Period size: 309 Copynumber: 2.1 Consensus size: 309
1204510 ACTCTTTCAA
* * * * * * * *
1204520 GATTCGATATTCCCTG-AGTAACAATGGAATAAGTCTGCATCT-ATTCAATCTTCCTTGGAGAAC
1 GATTCAATATTCCCTGAAG-AACAGTGGAACAAGTCTTCCT-TGATTTAATCTTCCATGAAGAAC
* *
1204583 AGTGGAATGAATCAACGTGCTCAGATCTGATTTTCCCTCAAGAAGAAGCCGAACATATCCCTCTC
64 AGTGGAATAAATCAACGTGCTCAGATCTGATTTTCCCTCAAGAAGAAGCAGAACATATCCCTCTC
* *
1204648 TTTCTAGATTTGATATTCCCTGAGTAACAATGGAACAAGTATGCCTCGATTCAATCTTCCCTGAA
129 TTTCTAGATTTGAAATTCCCTGAGTAACAATGGAACAAGTATGCCTCGATTCAATCTTCACTGAA
* ** * * * * * *
1204713 GAATAGTGGAATGAATAAATGTCCTCAGATTTGATTTTCCCT-AAAAAAGAAGCGGAATAGATCC
194 GAATAGTGGAATAAATAAACATCCCCAGATCTGATTATCCCTCAAAAAA-AAGCGAAACAAATCC
** * * *
1204777 ATCTCTTTCAAGAATTGATATTCTTTGAGTAATAGTAGAACAAGTATGCCTT
258 ATCTCTTTCAAGAATTGATATTCCCTGAGTAACAGTAGAACAAGTATACCTC
*
1204829 GATTCAATCTTCCCTGAAGAACAGTGGAACAAGTCTTCCTTGATTTAATCTTCCATGAAGAACAG
1 GATTCAATATTCCCTGAAGAACAGTGGAACAAGTCTTCCTTGATTTAATCTTCCATGAAGAACAG
* * *
1204894 TGGAATAAATCAACGT-CTTCATATTTGATTTTCCCTCAAGAAGAAG-AGAAACATGTCCCTCTC
66 TGGAATAAATCAACGTGC-TCAGATCTGATTTTCCCTCAAGAAGAAGCAG-AACATATCCCTCTC
* * * * * *
1204957 TTT-TAAGATTTGAAATTCCCTGAGTAACAGTGGAACAATTCTTCCTTGATTCAATCTTTACTGA
129 TTTCT-AGATTTGAAATTCCCTGAGTAACAATGGAACAAGTATGCCTCGATTCAATCTTCACTGA
** * * *
1205021 AGAATAGTGGAATAAATTGACATCCCCATATCTGATTATCCCTCAAGAAAAAGTGAAACAAATCC
193 AGAATAGTGGAATAAATAAACATCCCCAGATCTGATTATCCCTCAAAAAAAAGCGAAACAAATCC
* * * * *
1205086 CTCTCTTTCAAGATTTGATCTTCCCTGAGTAACAGTGGAACAAGTCTACCTC
258 ATCTCTTTCAAGAATTGATATTCCCTGAGTAACAGTAGAACAAGTATACCTC
1205138 GATTCAATATTCCCTGAA
1 GATTCAATATTCCCTGAA
1205156 AAAATTGGAA
Statistics
Matches: 274, Mismatches: 47, Indels: 12
0.82 0.14 0.04
Matches are distributed among these distances:
308 4 0.01
309 263 0.96
310 7 0.03
ACGTcount: A:0.33, C:0.20, G:0.16, T:0.31
Consensus pattern (309 bp):
GATTCAATATTCCCTGAAGAACAGTGGAACAAGTCTTCCTTGATTTAATCTTCCATGAAGAACAG
TGGAATAAATCAACGTGCTCAGATCTGATTTTCCCTCAAGAAGAAGCAGAACATATCCCTCTCTT
TCTAGATTTGAAATTCCCTGAGTAACAATGGAACAAGTATGCCTCGATTCAATCTTCACTGAAGA
ATAGTGGAATAAATAAACATCCCCAGATCTGATTATCCCTCAAAAAAAAGCGAAACAAATCCATC
TCTTTCAAGAATTGATATTCCCTGAGTAACAGTAGAACAAGTATACCTC
Found at i:1204978 original size:134 final size:134
Alignment explanation
Indices: 1204838--1205155 Score: 406
Period size: 134 Copynumber: 2.4 Consensus size: 134
1204828 TGATTCAATC
*
1204838 TTCCCTGAAG-AACAGTGGAACAAGTCTTCCTTGATTTAATCTTCCATGAAGAACAGTGGAATAA
1 TTCCCTG-AGTAACAGTGGAACAAGTCTTCCTTGATTCAATCTTCCATGAAGAACAGTGGAATAA
* ** * * * ** *
1204902 ATCAACGTCTTCATATTTGATTTTCCCTCAAGAAGAAGAGAAACATGTCCCTCTCTTTTAAGATT
65 ATCAACATCCCCATATCTGATTATCCCTCAAGAAAAAGAGAAACAAATCCCTCTCTTTCAAGATT
1204967 TGAAA
130 TGAAA
* * *
1204972 TTCCCTGAGTAACAGTGGAACAATTCTTCCTTGATTCAATCTT-TACTGAAGAATAGTGGAATAA
1 TTCCCTGAGTAACAGTGGAACAAGTCTTCCTTGATTCAATCTTCCA-TGAAGAACAGTGGAATAA
** *
1205036 ATTGACATCCCCATATCTGATTATCCCTCAAGAAAAAGTGAAACAAATCCCTCTCTTTCAAGATT
65 ATCAACATCCCCATATCTGATTATCCCTCAAGAAAAAGAGAAACAAATCCCTCTCTTTCAAGATT
**
1205101 TGATC
130 TGAAA
* * * *
1205106 TTCCCTGAGTAACAGTGGAACAAGTCTACCTCGATTCAATATTCCCTGAA
1 TTCCCTGAGTAACAGTGGAACAAGTCTTCCTTGATTCAATCTTCCATGAA
1205156 AAAATTGGAA
Statistics
Matches: 157, Mismatches: 24, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
133 3 0.02
134 154 0.98
ACGTcount: A:0.33, C:0.21, G:0.15, T:0.31
Consensus pattern (134 bp):
TTCCCTGAGTAACAGTGGAACAAGTCTTCCTTGATTCAATCTTCCATGAAGAACAGTGGAATAAA
TCAACATCCCCATATCTGATTATCCCTCAAGAAAAAGAGAAACAAATCCCTCTCTTTCAAGATTT
GAAA
Found at i:1205353 original size:3 final size:3
Alignment explanation
Indices: 1205341--1205376 Score: 56
Period size: 3 Copynumber: 12.0 Consensus size: 3
1205331 ATTTTCATCC
1205341 TAT T-T TAT TAT TAT TAT TAT TAT TAT TAT TAAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T-AT TAT
1205377 AGTTATTGCC
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
2 2 0.06
3 26 0.84
4 3 0.10
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:1206195 original size:18 final size:18
Alignment explanation
Indices: 1206156--1206194 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
1206146 TTCTCTCTCT
*
1206156 AAAACTAAAAAAATGAAG
1 AAAACTAAAAAAATAAAG
*
1206174 AAAATTAAAAAAA-AAAG
1 AAAACTAAAAAAATAAAG
1206191 AAAA
1 AAAA
1206195 AAATATTGTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 7 0.37
18 12 0.63
ACGTcount: A:0.79, C:0.03, G:0.08, T:0.10
Consensus pattern (18 bp):
AAAACTAAAAAAATAAAG
Found at i:1207511 original size:130 final size:131
Alignment explanation
Indices: 1207359--1207657 Score: 366
Period size: 131 Copynumber: 2.3 Consensus size: 131
1207349 TCTAAGGCAT
* * * * *
1207359 AAAGGTCATTTATTCTCAATTGGAAATAATTTGATGTTATCATTCTCTCTCGAATTAATATTG-A
1 AAAGGTCATTTATTCTCAATTGGAAATAATTAGATATTATCATTCTCACTCGAATCAATAATGAA
* * * * * *
1207423 TTTTTATATGGAATAGTGATATCTCTTCATTTCTATTGGAGCAATAAATGAATGCTTTAATATAT
66 TTTTAAGACGAAATAGTAATATCTCTTCATTTCTATTGGAGCAATAAATGAATGCTTTAAGATAT
1207488 G
131 G
* * * * * *
1207489 AGAGGTCATTCATTCTCAATTGGAAATCATTAGATATTATCGTTTTCACTCGAATCGATAATGAA
1 AAAGGTCATTTATTCTCAATTGGAAATAATTAGATATTATCATTCTCACTCGAATCAATAATGAA
* * * *
1207554 TTTTAAGACGAAATAGTAATATCTCTTCATTTCTATTGGAGTAATAAATGATTGTTTTAAGGTAT
66 TTTTAAGACGAAATAGTAATATCTCTTCATTTCTATTGGAGCAATAAATGAATGCTTTAAGATAT
1207619 G
131 G
* * * *
1207620 AAAGGTAATTTATTATCGATTGGAAATAATTAAATATT
1 AAAGGTCATTTATTCTCAATTGGAAATAATTAGATATT
1207658 TTTGTTTTTC
Statistics
Matches: 140, Mismatches: 28, Indels: 1
0.83 0.17 0.01
Matches are distributed among these distances:
130 52 0.37
131 88 0.63
ACGTcount: A:0.34, C:0.10, G:0.15, T:0.41
Consensus pattern (131 bp):
AAAGGTCATTTATTCTCAATTGGAAATAATTAGATATTATCATTCTCACTCGAATCAATAATGAA
TTTTAAGACGAAATAGTAATATCTCTTCATTTCTATTGGAGCAATAAATGAATGCTTTAAGATAT
G
Found at i:1208815 original size:15 final size:16
Alignment explanation
Indices: 1208790--1208819 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
1208780 GCGACCGCGC
1208790 AGGGCCCCCAAAAAAT
1 AGGGCCCCCAAAAAAT
1208806 AGGG-CCCCAAAAAA
1 AGGGCCCCCAAAAAA
1208820 GTATATATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.47, C:0.30, G:0.20, T:0.03
Consensus pattern (16 bp):
AGGGCCCCCAAAAAAT
Found at i:1209004 original size:114 final size:115
Alignment explanation
Indices: 1208795--1209015 Score: 329
Period size: 114 Copynumber: 1.9 Consensus size: 115
1208785 CGCGCAGGGC
* *
1208795 CCCCAAAAAATAGGGCCCCAAAAAAGTATATATATAGTGGCATTTTTCCAATAAACGCCACTATA
1 CCCCAAAAAAT--GGCCCCAAAAAAGTATATATATAGTGGCATTTTCCCAATAAACACCACTATA
* * **
1208860 GATGGACCATTGCGATGTTTTTTTTTAAAAAATGCCACTATTATTGTGCAGG
64 GATGGACCATTGCGACGTTTTTCTCAAAAAAATGCCACTATTATTGTGCAGG
* *
1208912 CCCCAAAAAAT-GCCCCAACAAAGTATATATATAGTGGCGTTTTCCCAATAAACACCACTATAGA
1 CCCCAAAAAATGGCCCCAAAAAAGTATATATATAGTGGCATTTTCCCAATAAACACCACTATAGA
1208976 TGGACCTATTGCGACG-TTTTCTCAAAAAAATGCCACTATT
66 TGGACC-ATTGCGACGTTTTTCTCAAAAAAATGCCACTATT
1209016 GTTGCCCCGA
Statistics
Matches: 95, Mismatches: 8, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
114 76 0.80
115 8 0.08
117 11 0.12
ACGTcount: A:0.36, C:0.22, G:0.14, T:0.28
Consensus pattern (115 bp):
CCCCAAAAAATGGCCCCAAAAAAGTATATATATAGTGGCATTTTCCCAATAAACACCACTATAGA
TGGACCATTGCGACGTTTTTCTCAAAAAAATGCCACTATTATTGTGCAGG
Found at i:1216208 original size:23 final size:21
Alignment explanation
Indices: 1216154--1216215 Score: 72
Period size: 20 Copynumber: 2.9 Consensus size: 21
1216144 TTTTGGTGCA
1216154 GAGGGAATCGATACCCCC-AT
1 GAGGGAATCGATACCCCCTAT
* * *
1216174 GAGGGAACCGATTCCCCCTTT
1 GAGGGAATCGATACCCCCTAT
1216195 GAAGGGGAATCGATACCCCCT
1 G-A-GGGAATCGATACCCCCT
1216216 GGGGTTCTGG
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
20 16 0.47
21 2 0.06
22 1 0.03
23 15 0.44
ACGTcount: A:0.26, C:0.31, G:0.26, T:0.18
Consensus pattern (21 bp):
GAGGGAATCGATACCCCCTAT
Found at i:1216408 original size:20 final size:20
Alignment explanation
Indices: 1216383--1216424 Score: 75
Period size: 20 Copynumber: 2.1 Consensus size: 20
1216373 CTACTAGCAT
*
1216383 CATTAAAATCGTGCAAACAA
1 CATTAAAATCATGCAAACAA
1216403 CATTAAAATCATGCAAACAA
1 CATTAAAATCATGCAAACAA
1216423 CA
1 CA
1216425 CCAAATCCAC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.52, C:0.21, G:0.07, T:0.19
Consensus pattern (20 bp):
CATTAAAATCATGCAAACAA
Found at i:1221346 original size:41 final size:42
Alignment explanation
Indices: 1221257--1221347 Score: 112
Period size: 41 Copynumber: 2.2 Consensus size: 42
1221247 CTAAATAGTT
* * *
1221257 TTCATATTTATACTTAAAATACTTATTTGCACCAAAATAATG
1 TTCATATTTATACTTAAAACAATTATTTGCACCAAAACAATG
* * * *
1221299 TCCATATTTA-CCTTAAAACAATTATTTGCAGCAAAACGATG
1 TTCATATTTATACTTAAAACAATTATTTGCACCAAAACAATG
1221340 TTCATATT
1 TTCATATT
1221348 ATAGTTTTTG
Statistics
Matches: 41, Mismatches: 8, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
41 32 0.78
42 9 0.22
ACGTcount: A:0.38, C:0.16, G:0.07, T:0.38
Consensus pattern (42 bp):
TTCATATTTATACTTAAAACAATTATTTGCACCAAAACAATG
Found at i:1222964 original size:32 final size:32
Alignment explanation
Indices: 1222928--1223013 Score: 118
Period size: 32 Copynumber: 2.7 Consensus size: 32
1222918 AACTGCTATG
* * *
1222928 CATTATCTGAATCCGACCCTGACACTATTGTA
1 CATTATCTGAATGCGACACTAACACTATTGTA
* *
1222960 CATTATCTGAATGCGACACTAACATTATTGTG
1 CATTATCTGAATGCGACACTAACACTATTGTA
*
1222992 CATTATATGAATGCGACACTAA
1 CATTATCTGAATGCGACACTAA
1223014 TATTACGTTA
Statistics
Matches: 48, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
32 48 1.00
ACGTcount: A:0.33, C:0.22, G:0.14, T:0.31
Consensus pattern (32 bp):
CATTATCTGAATGCGACACTAACACTATTGTA
Found at i:1232374 original size:17 final size:17
Alignment explanation
Indices: 1232344--1232386 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
1232334 CTAACGAGAG
* * *
1232344 TTTCTCGAACGAGAGTT
1 TTTCTCAAAAGAGAATT
1232361 TTTCTCAAAAGAGAATT
1 TTTCTCAAAAGAGAATT
*
1232378 TATCTCAAA
1 TTTCTCAAA
1232387 GAAAGGGAAG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.35, C:0.16, G:0.14, T:0.35
Consensus pattern (17 bp):
TTTCTCAAAAGAGAATT
Found at i:1235222 original size:16 final size:17
Alignment explanation
Indices: 1235187--1235228 Score: 59
Period size: 16 Copynumber: 2.5 Consensus size: 17
1235177 TAATTATTAT
*
1235187 TATTATTAAATAAAATA
1 TATTATTATATAAAATA
*
1235204 TATTATTATAT-ATATA
1 TATTATTATATAAAATA
1235220 TATTATTAT
1 TATTATTAT
1235229 CATTAAATAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 13 0.57
17 10 0.43
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (17 bp):
TATTATTATATAAAATA
Found at i:1235228 original size:39 final size:35
Alignment explanation
Indices: 1235167--1235240 Score: 103
Period size: 39 Copynumber: 2.0 Consensus size: 35
1235157 AATTTTTCAT
*
1235167 TATATTATTTTAATTATTATTATTATTAAATAAAA
1 TATATTATTTTAATTATTATTATCATTAAATAAAA
1235202 TATATTATTATATATATATATTATTATCATTAAATAAAA
1 TATATTATT-T-TA-AT-TATTATTATCATTAAATAAAA
1235241 AATAATAATA
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
35 9 0.26
36 1 0.03
37 2 0.06
38 2 0.06
39 20 0.59
ACGTcount: A:0.47, C:0.01, G:0.00, T:0.51
Consensus pattern (35 bp):
TATATTATTTTAATTATTATTATCATTAAATAAAA
Found at i:1237341 original size:19 final size:19
Alignment explanation
Indices: 1237301--1237344 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
1237291 TCTTTTCAAA
*
1237301 ATTTTTATATATACTTATT
1 ATTTTCATATATACTTATT
*
1237320 ATTTTCATA-ATATTTATAT
1 ATTTTCATATATACTTAT-T
1237339 ATTTTC
1 ATTTTC
1237345 TTATTAATAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
18 7 0.32
19 15 0.68
ACGTcount: A:0.32, C:0.07, G:0.00, T:0.61
Consensus pattern (19 bp):
ATTTTCATATATACTTATT
Found at i:1237348 original size:30 final size:30
Alignment explanation
Indices: 1237293--1237359 Score: 75
Period size: 30 Copynumber: 2.2 Consensus size: 30
1237283 ACATTCTTTC
*
1237293 TTTTCA-AAATTTTTATATATACTTATT-A
1 TTTTCATAAATTTATATATATACTTATTAA
* *
1237321 TTTTCATAATATTTATATATTTTCTTATTAA
1 TTTTCATAA-ATTTATATATATACTTATTAA
1237352 TATTTCAT
1 T-TTTCAT
1237360 TTTATTTGCA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
28 6 0.19
29 2 0.06
30 16 0.50
31 2 0.06
32 6 0.19
ACGTcount: A:0.33, C:0.07, G:0.00, T:0.60
Consensus pattern (30 bp):
TTTTCATAAATTTATATATATACTTATTAA
Found at i:1246966 original size:22 final size:22
Alignment explanation
Indices: 1246937--1246991 Score: 101
Period size: 22 Copynumber: 2.5 Consensus size: 22
1246927 ATCAACACTC
1246937 TTCAAAGATGATAGATTCTCTT
1 TTCAAAGATGATAGATTCTCTT
*
1246959 TTTAAAGATGATAGATTCTCTT
1 TTCAAAGATGATAGATTCTCTT
1246981 TTCAAAGATGA
1 TTCAAAGATGA
1246992 AAGCTTTATG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.35, C:0.11, G:0.15, T:0.40
Consensus pattern (22 bp):
TTCAAAGATGATAGATTCTCTT
Found at i:1247859 original size:76 final size:76
Alignment explanation
Indices: 1247733--1248903 Score: 2207
Period size: 76 Copynumber: 15.4 Consensus size: 76
1247723 ATGTTTCCCA
*
1247733 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGTGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1247798 AGCCTTCGGGT
66 AGCCTTCGGGT
1247809 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
*
1247874 ATCCTTCGGGT
66 AGCCTTCGGGT
1247885 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1247950 AGCCTTCGGGT
66 AGCCTTCGGGT
1247961 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
*
1248026 ATCCTTCGGGT
66 AGCCTTCGGGT
1248037 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1248102 AGCCTTCGGGT
66 AGCCTTCGGGT
1248113 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1248178 AGCCTTCGGGT
66 AGCCTTCGGGT
*
1248189 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAATCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1248254 AGCCTTCGGGT
66 AGCCTTCGGGT
*
1248265 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAATCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTC-A
*
1248330 AAACCTTCGGGT
65 AAGCCTTCGGGT
* *
1248342 CATCTGTAAGTCCTTCAGTGTATGATGTTTCTAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
*
1248407 AACCTTCGGGT
66 AGCCTTCGGGT
* *
1248418 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCTGGAGCTTTTTAATGTTTTCAA
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1248483 AGCCTTCGGGT
66 AGCCTTCGGGT
*
1248494 CATCTGTAAGTCCTTCAGTGAATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
*
1248559 AACCTTCGGGT
66 AGCCTTCGGGT
1248570 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1248635 AGCCTTCGGGT
66 AGCCTTCGGGT
1248646 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1248711 AGCCTTCGGGT
66 AGCCTTCGGGT
*
1248722 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGATTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1248787 AGCCTTCGGGT
66 AGCCTTCGGGT
1248798 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1248863 AGCCTTCGGGT
66 AGCCTTCGGGT
1248874 CATCTGTAAGTCCTTCAGTGCATGATGTTT
1 CATCTGTAAGTCCTTCAGTGCATGATGTTT
1248904 TCAATATTTC
Statistics
Matches: 1071, Mismatches: 23, Indels: 2
0.98 0.02 0.00
Matches are distributed among these distances:
76 999 0.93
77 72 0.07
ACGTcount: A:0.22, C:0.21, G:0.21, T:0.36
Consensus pattern (76 bp):
CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
AGCCTTCGGGT
Found at i:1249080 original size:16 final size:17
Alignment explanation
Indices: 1249045--1249086 Score: 59
Period size: 16 Copynumber: 2.5 Consensus size: 17
1249035 TAATTATTAT
*
1249045 TATTATTAAATAAAATA
1 TATTATTATATAAAATA
*
1249062 TATTATTATAT-ATATA
1 TATTATTATATAAAATA
1249078 TATTATTAT
1 TATTATTAT
1249087 CATTAAATAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 13 0.57
17 10 0.43
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (17 bp):
TATTATTATATAAAATA
Found at i:1249086 original size:39 final size:35
Alignment explanation
Indices: 1249025--1249098 Score: 103
Period size: 39 Copynumber: 2.0 Consensus size: 35
1249015 AATTTTTCAT
*
1249025 TATATTATTTTAATTATTATTATTATTAAATAAAA
1 TATATTATTTTAATTATTATTATCATTAAATAAAA
1249060 TATATTATTATATATATATATTATTATCATTAAATAAAA
1 TATATTATT-T-TA-AT-TATTATTATCATTAAATAAAA
1249099 AATAATAATA
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
35 9 0.26
36 1 0.03
37 2 0.06
38 2 0.06
39 20 0.59
ACGTcount: A:0.47, C:0.01, G:0.00, T:0.51
Consensus pattern (35 bp):
TATATTATTTTAATTATTATTATCATTAAATAAAA
Found at i:1249105 original size:3 final size:3
Alignment explanation
Indices: 1249099--1249123 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
1249089 TTAAATAAAA
1249099 AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT A
1249124 TTACAAAGCC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:1256996 original size:23 final size:23
Alignment explanation
Indices: 1256970--1257020 Score: 75
Period size: 23 Copynumber: 2.2 Consensus size: 23
1256960 AATAACATAT
**
1256970 TAGGTACCGCTTATATAATCTAA
1 TAGGTACCGCTTATATAATAAAA
*
1256993 TAGGTAGCGCTTATATAATAAAA
1 TAGGTACCGCTTATATAATAAAA
1257016 TAGGT
1 TAGGT
1257021 TAATTACTGC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.37, C:0.12, G:0.18, T:0.33
Consensus pattern (23 bp):
TAGGTACCGCTTATATAATAAAA
Found at i:1257094 original size:87 final size:87
Alignment explanation
Indices: 1256948--1257115 Score: 293
Period size: 87 Copynumber: 1.9 Consensus size: 87
1256938 AACCGAAAAT
*
1256948 ATTATCAAGTACAATAACATATTAGGTACCGCTTATATAATCTAATAGGTAGCGCTTATATAATA
1 ATTATCAAGCACAATAACATATTAGGTACCGCTTATATAATCTAATAGGTAGCGCTTATATAATA
1257013 AAATAGGTTAATTACTGCACAC
66 AAATAGGTTAATTACTGCACAC
* *
1257035 ATTATCAAGCACAATAGCATATTAGGTAGCGCTTATATAA-CGTAATAGGTAGCGCTTATATAAT
1 ATTATCAAGCACAATAACATATTAGGTACCGCTTATATAATC-TAATAGGTAGCGCTTATATAAT
1257099 AAAATAGGTTAATTACT
65 AAAATAGGTTAATTACT
1257116 TAATTTGTTA
Statistics
Matches: 77, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
86 1 0.01
87 76 0.99
ACGTcount: A:0.40, C:0.14, G:0.14, T:0.32
Consensus pattern (87 bp):
ATTATCAAGCACAATAACATATTAGGTACCGCTTATATAATCTAATAGGTAGCGCTTATATAATA
AAATAGGTTAATTACTGCACAC
Found at i:1257104 original size:23 final size:23
Alignment explanation
Indices: 1257057--1257107 Score: 75
Period size: 23 Copynumber: 2.2 Consensus size: 23
1257047 AATAGCATAT
**
1257057 TAGGTAGCGCTTATATAACGTAA
1 TAGGTAGCGCTTATATAACAAAA
*
1257080 TAGGTAGCGCTTATATAATAAAA
1 TAGGTAGCGCTTATATAACAAAA
1257103 TAGGT
1 TAGGT
1257108 TAATTACTTA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.37, C:0.10, G:0.22, T:0.31
Consensus pattern (23 bp):
TAGGTAGCGCTTATATAACAAAA
Found at i:1257262 original size:23 final size:23
Alignment explanation
Indices: 1257206--1257265 Score: 84
Period size: 23 Copynumber: 2.6 Consensus size: 23
1257196 ATCAAGCACA
*
1257206 ATAATATACTAGGTAGCGTTTAT
1 ATAATATAATAGGTAGCGTTTAT
**
1257229 ATAACGTAATAGGTAGCGTTTAT
1 ATAATATAATAGGTAGCGTTTAT
*
1257252 ATAATAAAATAGGT
1 ATAATATAATAGGT
1257266 TAATTACTTA
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 31 1.00
ACGTcount: A:0.40, C:0.07, G:0.18, T:0.35
Consensus pattern (23 bp):
ATAATATAATAGGTAGCGTTTAT
Found at i:1257308 original size:158 final size:158
Alignment explanation
Indices: 1257018--1257559 Score: 913
Period size: 158 Copynumber: 3.4 Consensus size: 158
1257008 TAATAAAATA
* * *
1257018 GGTTAATTACTGCACACATTATCAAGCACAATAGCATATTAGGTAGCGCTTATATAACGTAATAG
1 GGTTAATTACTGGAAACATTATCAAGCACAATAACATATTAGGTAGCGCTTATATAACGTAATAG
*
1257083 GTAGCGCTTATATAATAAAATAGGTTAATTACTTAATTTGTTATTACAACATATTAGGTAAATGC
66 GTAGCGCTTATATAATAAAATAGGTTAATTACTTAATTTGTTATTACAACATATTAGGTAAACGC
*
1257148 CTAAAATGTTACCAAGGATAACATAAAC
131 CTAAAATGTTACCAAGGATAACATAATC
* * * *
1257176 GGTTATTTACTGGAAACATTATCAAGCACAATAATATACTAGGTAGCGTTTATATAACGTAATAG
1 GGTTAATTACTGGAAACATTATCAAGCACAATAACATATTAGGTAGCGCTTATATAACGTAATAG
* *
1257241 GTAGCGTTTATATAATAAAATAGGTTAATTACTTAATTTTTTATTACAACATATTAGGTAAACGC
66 GTAGCGCTTATATAATAAAATAGGTTAATTACTTAATTTGTTATTACAACATATTAGGTAAACGC
1257306 CTAAAATGTTACCAAGGATAACATAATC
131 CTAAAATGTTACCAAGGATAACATAATC
* *
1257334 GGTTATTTACTAGAAACATTATCAAGCACAATAACATATTAGGTAGCGCTTATATAACGTAATAG
1 GGTTAATTACTGGAAACATTATCAAGCACAATAACATATTAGGTAGCGCTTATATAACGTAATAG
* *
1257399 GTAGCACTTATATAATAAAGTAGGTTAATTACTTAATTTGTTATTACAACATATTAGGTAAACGC
66 GTAGCGCTTATATAATAAAATAGGTTAATTACTTAATTTGTTATTACAACATATTAGGTAAACGC
1257464 CTAAAATGTTACCAAGGATAACATAATC
131 CTAAAATGTTACCAAGGATAACATAATC
* * * *
1257492 GGTTAATTACTGGAAACATTATCAAGCATAATAACATATTAGGTAGAGCTTATGTAACATAATAG
1 GGTTAATTACTGGAAACATTATCAAGCACAATAACATATTAGGTAGCGCTTATATAACGTAATAG
1257557 GTA
66 GTA
1257560 ATTACTTACT
Statistics
Matches: 359, Mismatches: 25, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
158 359 1.00
ACGTcount: A:0.40, C:0.13, G:0.15, T:0.32
Consensus pattern (158 bp):
GGTTAATTACTGGAAACATTATCAAGCACAATAACATATTAGGTAGCGCTTATATAACGTAATAG
GTAGCGCTTATATAATAAAATAGGTTAATTACTTAATTTGTTATTACAACATATTAGGTAAACGC
CTAAAATGTTACCAAGGATAACATAATC
Found at i:1257390 original size:23 final size:23
Alignment explanation
Indices: 1257364--1257413 Score: 73
Period size: 23 Copynumber: 2.2 Consensus size: 23
1257354 ATCAAGCACA
* *
1257364 ATAACATATTAGGTAGCGCTTAT
1 ATAACATAATAGGTAGCACTTAT
*
1257387 ATAACGTAATAGGTAGCACTTAT
1 ATAACATAATAGGTAGCACTTAT
1257410 ATAA
1 ATAA
1257414 TAAAGTAGGT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.40, C:0.12, G:0.16, T:0.32
Consensus pattern (23 bp):
ATAACATAATAGGTAGCACTTAT
Found at i:1257816 original size:2 final size:2
Alignment explanation
Indices: 1257809--1257874 Score: 132
Period size: 2 Copynumber: 33.0 Consensus size: 2
1257799 TAAGTATGAA
1257809 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1257851 AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT
1257875 GTGTGTGTAT
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 64 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1260220 original size:199 final size:199
Alignment explanation
Indices: 1259756--1260899 Score: 1496
Period size: 199 Copynumber: 5.8 Consensus size: 199
1259746 AAATATTGAT
* * * * * *
1259756 ACAAATTTTAAAAGTGTCGAAATATTATGTTGACCTATTTTCTAATTATACCGGTATATTTCTAC
1 ACAAATTTAAAAAGTGTCGATACATTATGTAGACCTATTTTCTAATAAAACCGGTATATTTCTAC
* * ** * *
1259821 CGGTTACATTGTAAATTTACCTAATACATTATAATTATGGGTTTCAATGTTTTTGGGATCAATAC
66 CGGTTACATTGTAAAGTTACCTATTACATTATAATTATCAGTTTCGATGTTTTTGGGATCGATAC
* * * *
1259886 -TTTTAATAAATGTATCGACACTTTATGTGTACACCTCG-TGTGGCTTTCATTCTGGACAAAAAG
131 AATTT--TAAATGTATCGACACTTTATGCGTGCACCTCGTTG-GGCATTCATTCTGGACAAAAAG
1259949 TATCGAC
193 TATCGAC
* * * *
1259956 AACAATTTTAAAAA-TATCAATACATTATGCT-GACCTATTTTCTAAT-TAACCGGTATATTTCT
1 -ACAAATTTAAAAAGTGTCGATACATTATG-TAGACCTATTTTCTAATAAAACCGGTATATTTCT
*
1260018 ACCGGTTACATTGTAAAGTTACCTATTACATTATAATTATCAGTTTCGGTGTTTTTGGGATCGAT
64 ACCGGTTACATTGTAAAGTTACCTATTACATTATAATTATCAGTTTCGATGTTTTTGGGATCGAT
* *
1260083 ACAATTTTAAATGTAT-GCACACTTTATGCTTGCACCTCGTTGGGCATTCATTCTGGACAAAAAA
129 ACAATTTTAAATGTATCG-ACACTTTATGCGTGCACCTCGTTGGGCATTCATTCTGGACAAAAAG
1260147 TATCGAC
193 TATCGAC
* * * *
1260154 ACAAATTTAAAAAGTGTTGATACATTATGTAGACCTATTTTCTCATAAAACCAGTATATCTCTAC
1 ACAAATTTAAAAAGTGTCGATACATTATGTAGACCTATTTTCTAATAAAACCGGTATATTTCTAC
* * *
1260219 CGGTTACATTGTAAAGTTACCTATTACATTTTAATTATCGGTTTCGATGTTTTCT-GGATTGATA
66 CGGTTACATTGTAAAGTTACCTATTACATTATAATTATCAGTTTCGATGTTTT-TGGGATCGATA
* * *
1260283 CAATTTTAAATGTATCGATACTTTATGCATGCACCTCGTTGGGCATTCATTCTAGACAAAAAGTA
130 CAATTTTAAATGTATCGACACTTTATGCGTGCACCTCGTTGGGCATTCATTCTGGACAAAAAGTA
1260348 TCGAC
195 TCGAC
* * *
1260353 ACAAATTTAAAAAGTGTCAATACATTATGTAGACCTATTTTCTCATATAACCGGTATATTTCTAC
1 ACAAATTTAAAAAGTGTCGATACATTATGTAGACCTATTTTCTAATAAAACCGGTATATTTCTAC
* *
1260418 CGGTTACATTGTAAAGTTACCTATTACATTATAATTATCGGTTTTGATGTTTTCT-GGATCGATA
66 CGGTTACATTGTAAAGTTACCTATTACATTATAATTATCAGTTTCGATGTTTT-TGGGATCGATA
* * *
1260482 CAATTTTAAATGTATCGGCAATTTATGCGTGCACCTCGTTGGGCATTCATTCTGGATAAAAAGTA
130 CAATTTTAAATGTATCGACACTTTATGCGTGCACCTCGTTGGGCATTCATTCTGGACAAAAAGTA
1260547 TCGAC
195 TCGAC
* * * * *
1260552 ACAAATTTAAAAA-TGTCGATACATTATGTAGACTTATTTTCTAATATAATCAGTATATTTCTAT
1 ACAAATTTAAAAAGTGTCGATACATTATGTAGACCTATTTTCTAATAAAACCGGTATATTTCTAC
* *
1260616 CGGTTACATTGTAAAGTTACCTATTACATTATAATTATCAGTTTTGATGTTTTTAGGATCGATAC
66 CGGTTACATTGTAAAGTTACCTATTACATTATAATTATCAGTTTCGATGTTTTTGGGATCGATAC
* * * * * * *
1260681 AATTTTAAATGTATCGACACTTTATGCGTGAACCTAGTTTGTCATTCATTCTAGAGAAAACGTAT
131 AATTTTAAATGTATCGACACTTTATGCGTGCACCTCGTTGGGCATTCATTCTGGACAAAAAGTAT
*
1260746 CAAC
196 CGAC
* * * ** * * * * *
1260750 ATAAATTTCAAAAGCGTCGATACATTCGGTAGACCTAATCTCTCATAAAACTGGTATATTTATAC
1 ACAAATTTAAAAAGTGTCGATACATTATGTAGACCTATTTTCTAATAAAACCGGTATATTTCTAC
* * * * * *
1260815 CAGTTACATTGTAAATTTACCTATTGCATCATAATTATCAATTTCGATGTTTTTGGGATCAATAC
66 CGGTTACATTGTAAAGTTACCTATTACATTATAATTATCAGTTTCGATGTTTTTGGGATCGATAC
*
1260880 AATTTTAAATGTATTGACAC
131 AATTTTAAATGTATCGACAC
1260900 ATTTGTTTAC
Statistics
Matches: 840, Mismatches: 92, Indels: 24
0.88 0.10 0.03
Matches are distributed among these distances:
197 15 0.02
198 257 0.31
199 525 0.62
200 31 0.04
201 12 0.01
ACGTcount: A:0.32, C:0.16, G:0.14, T:0.38
Consensus pattern (199 bp):
ACAAATTTAAAAAGTGTCGATACATTATGTAGACCTATTTTCTAATAAAACCGGTATATTTCTAC
CGGTTACATTGTAAAGTTACCTATTACATTATAATTATCAGTTTCGATGTTTTTGGGATCGATAC
AATTTTAAATGTATCGACACTTTATGCGTGCACCTCGTTGGGCATTCATTCTGGACAAAAAGTAT
CGAC
Found at i:1260640 original size:397 final size:397
Alignment explanation
Indices: 1259743--1260893 Score: 1548
Period size: 397 Copynumber: 2.9 Consensus size: 397
1259733 GCGTATTTTA
* * * * * *
1259743 AAAAAATATTGATACAAATTTTAAAAGTGTCGAAATATTATGTTGACCTATTTTCTAAT-TATAC
1 AAAAAATATCGACACAAA-TTTAAAAATGTCGATACATTATGTAGACCTATTTTCTAATATA-AC
* * * * *
1259807 CGGTATATTTCTACCGGTTACATTGTAAATTTACCTAATACATTATAATTATGGGTTTCAATGTT
64 CAGTATATTTCTACCGGTTACATTGTAAAGTTACCTATTACATTATAATTATCGGTTTCGATGTT
* * * * * *
1259872 TTTGGGATCAATAC-TTTTAATAAATGTATCGACACTTTATGTGTACACCTCG-TGTGGCTTTCA
129 TTTAGGATCGATACAATTT--TAAATGTATCGACACTTTATGCGTGCACCTCGTTG-GGCATTCA
* * *
1259935 TTCTGGACAAAAAGTATCGACAACAATTTTAAAAA-TATCAATACATTATGCT-GACCTATTTTC
191 TTCTAGACAAAAAGTATCGAC-ACAAATTTAAAAAGTGTCAATACATTATG-TAGACCTATTTTC
*
1259998 TAAT-TAACCGGTATATTTCTACCGGTTACATTGTAAAGTTACCTATTACATTATAATTATCAGT
254 TCATATAACCGGTATATTTCTACCGGTTACATTGTAAAGTTACCTATTACATTATAATTATCAGT
* *
1260062 TTCGGTGTTTTTGGGATCGATACAATTTTAAATGTATGCACACTTTATGCTTGCACCTCGTTGGG
319 TTCGATGTTTTTGGGATCGATACAATTTTAAATGTATGCACACTTTATGCGTGCACCTCGTTGGG
1260127 CATTCATTCTGGAC
384 CATTCATTCTGGAC
* * *
1260141 AAAAAATATCGACACAAATTTAAAAAGTGTTGATACATTATGTAGACCTATTTTCTCATAAAACC
1 AAAAAATATCGACACAAATTTAAAAA-TGTCGATACATTATGTAGACCTATTTTCTAATATAACC
* *
1260206 AGTATATCTCTACCGGTTACATTGTAAAGTTACCTATTACATTTTAATTATCGGTTTCGATGTTT
65 AGTATATTTCTACCGGTTACATTGTAAAGTTACCTATTACATTATAATTATCGGTTTCGATGTTT
* * *
1260271 TCT-GGATTGATACAATTTTAAATGTATCGATACTTTATGCATGCACCTCGTTGGGCATTCATTC
130 T-TAGGATCGATACAATTTTAAATGTATCGACACTTTATGCGTGCACCTCGTTGGGCATTCATTC
1260335 TAGACAAAAAGTATCGACACAAATTTAAAAAGTGTCAATACATTATGTAGACCTATTTTCTCATA
194 TAGACAAAAAGTATCGACACAAATTTAAAAAGTGTCAATACATTATGTAGACCTATTTTCTCATA
* *
1260400 TAACCGGTATATTTCTACCGGTTACATTGTAAAGTTACCTATTACATTATAATTATCGGTTTTGA
259 TAACCGGTATATTTCTACCGGTTACATTGTAAAGTTACCTATTACATTATAATTATCAGTTTCGA
1260465 TGTTTTCT-GGATCGATACAATTTTAAATGTATCGGCA-A-TTTATGCGTGCACCTCGTTGGGCA
324 TGTTTT-TGGGATCGATACAATTTTAAATGTAT--GCACACTTTATGCGTGCACCTCGTTGGGCA
*
1260527 TTCATTCTGGAT
386 TTCATTCTGGAC
* * *
1260539 AAAAAGTATCGACACAAATTTAAAAATGTCGATACATTATGTAGACTTATTTTCTAATATAATCA
1 AAAAAATATCGACACAAATTTAAAAATGTCGATACATTATGTAGACCTATTTTCTAATATAACCA
* * *
1260604 GTATATTTCTATCGGTTACATTGTAAAGTTACCTATTACATTATAATTATCAGTTTTGATGTTTT
66 GTATATTTCTACCGGTTACATTGTAAAGTTACCTATTACATTATAATTATCGGTTTCGATGTTTT
* * * *
1260669 TAGGATCGATACAATTTTAAATGTATCGACACTTTATGCGTGAACCTAGTTTGTCATTCATTCTA
131 TAGGATCGATACAATTTTAAATGTATCGACACTTTATGCGTGCACCTCGTTGGGCATTCATTCTA
* * * * * * * ** * * *
1260734 GAGAAAACGTATCAACATAAATTTCAAAAGCGTCGATACATTCGGTAGACCTAATCTCTCATAAA
196 GACAAAAAGTATCGACACAAATTTAAAAAGTGTCAATACATTATGTAGACCTATTTTCTCATATA
* * * * * * *
1260799 ACTGGTATATTTATACCAGTTACATTGTAAATTTACCTATTGCATCATAATTATCAATTTCGATG
261 ACCGGTATATTTCTACCGGTTACATTGTAAAGTTACCTATTACATTATAATTATCAGTTTCGATG
*
1260864 TTTTTGGGATCAATACAATTTTAAATGTAT
326 TTTTTGGGATCGATACAATTTTAAATGTAT
1260894 TGACACATTT
Statistics
Matches: 667, Mismatches: 73, Indels: 27
0.87 0.10 0.04
Matches are distributed among these distances:
396 15 0.02
397 376 0.56
398 266 0.40
399 7 0.01
400 3 0.00
ACGTcount: A:0.32, C:0.15, G:0.14, T:0.38
Consensus pattern (397 bp):
AAAAAATATCGACACAAATTTAAAAATGTCGATACATTATGTAGACCTATTTTCTAATATAACCA
GTATATTTCTACCGGTTACATTGTAAAGTTACCTATTACATTATAATTATCGGTTTCGATGTTTT
TAGGATCGATACAATTTTAAATGTATCGACACTTTATGCGTGCACCTCGTTGGGCATTCATTCTA
GACAAAAAGTATCGACACAAATTTAAAAAGTGTCAATACATTATGTAGACCTATTTTCTCATATA
ACCGGTATATTTCTACCGGTTACATTGTAAAGTTACCTATTACATTATAATTATCAGTTTCGATG
TTTTTGGGATCGATACAATTTTAAATGTATGCACACTTTATGCGTGCACCTCGTTGGGCATTCAT
TCTGGAC
Found at i:1260889 original size:596 final size:596
Alignment explanation
Indices: 1259756--1260893 Score: 1601
Period size: 596 Copynumber: 1.9 Consensus size: 596
1259746 AAATATTGAT
* * *
1259756 ACAAATTTTAAAAGTGTCGAAATATTATGTTGACCTATTTTCTAATTATACCGGTATATTTCTAC
1 ACAAATTTAAAAAGTGTCGAAACATTATGTAGACCTATTTTCTAATTATACCGGTATATTTCTAC
* *
1259821 CGGTTACATTGTAAATTTACCTAATACATTATAATTATGGGTTTCAATGTTTTTGGGATCAATAC
66 CGGTTACATTGTAAAGTTACCTAATACATTATAATTATCGGTTTCAATGTTTTTGGGATCAATAC
* * * *
1259886 TTTTAATAAATGTATCGACACTTTATGTGTACACCTCGTGTGGCTTTCATTCTGGACAAAAAGTA
131 ATTT-ATAAATGTATCGACAATTTATGCGTACACCTCGTGTGGCATTCATTCTGGACAAAAAGTA
* *
1259951 TCGACAACAATTTTAAAAATATCAATACATTATGCTGACCTATTTTCTAATTAACCGGTATATTT
195 TCGACAACAAATTTAAAAATATCAATACATTATGCTGACCTATTTTCTAATTAACCAGTATATTT
* *
1260016 CTACCGGTTACATTGTAAAGTTACCTATTACATTATAATTATCAGTTTCGGTGTTTTTGGGATCG
260 CTACCGGTTACATTGTAAAGTTACCTATTACATTATAATTATCAGTTTCGATGTTTTTAGGATCG
* * * *
1260081 ATACAATTTTAAATGTATGCACACTTTATGCTTGCACCTCGTTGGGCATTCATTCTGGACAAAAA
325 ATACAATTTTAAATGTATGCACACTTTATGCGTGAACCTAGTTGGGCATTCATTCTAGACAAAAA
* * * * * *
1260146 ATATCGACACAAATTTAAAAAGTGTTGATACATTATGTAGACCTATTTTCTCATAAAACCAGTAT
390 ATATCAACACAAATTTAAAAAGCGTCGATACATTAGGTAGACCTAATCTCTCATAAAACCAGTAT
* * ** **
1260211 ATCTCTACCGGTTACATTGTAAAGTTACCTATTACATTTTAATTATCGGTTTCGATGTTTTCTGG
455 ATCTATACCAGTTACATTGTAAAGTTACCTATTACATCATAATTATCAATTTCGATGTTTTCTGG
**
1260276 ATTGATACAATTTTAAATGTATCGATACTTTATGCATGCACCTCGTTGGGCATTCATTCTAGACA
520 ATCAATACAATTTTAAATGTATCGATACTTTATGCATGCACCTCGTTGGGCATTCATTCTAGACA
1260341 AAAAGTATCGAC
585 AAAAGTATCGAC
*
1260353 ACAAATTTAAAAAGTGTC-AATACATTATGTAGACCTATTTTCTCA-TATAACCGGTATATTTCT
1 ACAAATTTAAAAAGTGTCGAA-ACATTATGTAGACCTATTTTCTAATTAT-ACCGGTATATTTCT
* ** *
1260416 ACCGGTTACATTGTAAAGTTACCTATTACATTATAATTATCGGTTTTGATGTTTTCT-GGATCGA
64 ACCGGTTACATTGTAAAGTTACCTAATACATTATAATTATCGGTTTCAATGTTTT-TGGGATCAA
* * *
1260480 TACAATTT-TAAATGTATCGGCAATTTATGCGTGCACCTCGT-TGGGCATTCATTCTGGATAAAA
128 TAC-ATTTATAAATGTATCGACAATTTATGCGTACACCTCGTGT-GGCATTCATTCTGGACAAAA
* * * *
1260543 AGTATCGAC-ACAAATTTAAAAATGTCGATACATTATG-TAGACTTATTTTCTAATATAATCAGT
191 AGTATCGACAACAAATTTAAAAATATCAATACATTATGCT-GACCTATTTTCTAAT-TAACCAGT
* *
1260606 ATATTTCTATCGGTTACATTGTAAAGTTACCTATTACATTATAATTATCAGTTTTGATGTTTTTA
254 ATATTTCTACCGGTTACATTGTAAAGTTACCTATTACATTATAATTATCAGTTTCGATGTTTTTA
* *
1260671 GGATCGATACAATTTTAAATGTAT-CGACACTTTATGCGTGAACCTAGTTTGTCATTCATTCTAG
319 GGATCGATACAATTTTAAATGTATGC-ACACTTTATGCGTGAACCTAGTTGGGCATTCATTCTAG
* ** * * *
1260735 AGAAAACGTATCAACATAAATTTCAAAAGCGTCGATACATTCGGTAGACCTAATCTCTCATAAAA
383 ACAAAAAATATCAACACAAATTTAAAAAGCGTCGATACATTAGGTAGACCTAATCTCTCATAAAA
** * * *
1260800 CTGGTATATTTATACCAGTTACATTGTAAATTTACCTATTGCATCATAATTATCAATTTCGATGT
448 CCAGTATATCTATACCAGTTACATTGTAAAGTTACCTATTACATCATAATTATCAATTTCGATGT
1260865 TTT-TGGGATCAATACAATTTTAAATGTAT
513 TTTCT-GGATCAATACAATTTTAAATGTAT
1260894 TGACACATTT
Statistics
Matches: 474, Mismatches: 58, Indels: 19
0.86 0.11 0.03
Matches are distributed among these distances:
594 1 0.00
595 42 0.09
596 316 0.67
597 111 0.23
598 4 0.01
ACGTcount: A:0.32, C:0.16, G:0.14, T:0.38
Consensus pattern (596 bp):
ACAAATTTAAAAAGTGTCGAAACATTATGTAGACCTATTTTCTAATTATACCGGTATATTTCTAC
CGGTTACATTGTAAAGTTACCTAATACATTATAATTATCGGTTTCAATGTTTTTGGGATCAATAC
ATTTATAAATGTATCGACAATTTATGCGTACACCTCGTGTGGCATTCATTCTGGACAAAAAGTAT
CGACAACAAATTTAAAAATATCAATACATTATGCTGACCTATTTTCTAATTAACCAGTATATTTC
TACCGGTTACATTGTAAAGTTACCTATTACATTATAATTATCAGTTTCGATGTTTTTAGGATCGA
TACAATTTTAAATGTATGCACACTTTATGCGTGAACCTAGTTGGGCATTCATTCTAGACAAAAAA
TATCAACACAAATTTAAAAAGCGTCGATACATTAGGTAGACCTAATCTCTCATAAAACCAGTATA
TCTATACCAGTTACATTGTAAAGTTACCTATTACATCATAATTATCAATTTCGATGTTTTCTGGA
TCAATACAATTTTAAATGTATCGATACTTTATGCATGCACCTCGTTGGGCATTCATTCTAGACAA
AAAGTATCGAC
Found at i:1262498 original size:24 final size:24
Alignment explanation
Indices: 1262449--1262500 Score: 79
Period size: 24 Copynumber: 2.2 Consensus size: 24
1262439 ATTTATATTA
1262449 AAATTCAAACTCAAATTGAAATTG
1 AAATTCAAACTCAAATTGAAATTG
*
1262473 AAATTCAAACTCCAATT-AAATATG
1 AAATTCAAACTCAAATTGAAAT-TG
1262497 AAAT
1 AAAT
1262501 GAACATGGAA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
23 4 0.15
24 22 0.85
ACGTcount: A:0.52, C:0.13, G:0.06, T:0.29
Consensus pattern (24 bp):
AAATTCAAACTCAAATTGAAATTG
Found at i:1263911 original size:6 final size:6
Alignment explanation
Indices: 1263876--1263927 Score: 52
Period size: 6 Copynumber: 8.7 Consensus size: 6
1263866 CTCATTTGGA
* * * *
1263876 TCATCG TCATCA TCATCA TCATCT TCATCT TCATCT TTAT-T GTCATCT
1 TCATCT TCATCT TCATCT TCATCT TCATCT TCATCT TCATCT -TCATCT
1263924 TCAT
1 TCAT
1263928 TGAGCGCTTG
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
5 1 0.03
6 38 0.95
7 1 0.03
ACGTcount: A:0.21, C:0.29, G:0.04, T:0.46
Consensus pattern (6 bp):
TCATCT
Found at i:1266303 original size:198 final size:199
Alignment explanation
Indices: 1265414--1266758 Score: 1881
Period size: 199 Copynumber: 6.8 Consensus size: 199
1265404 GTAATTTTAA
* * * * * *
1265414 AAAAAATATCTACACAAATTTTAAAAAGTGTTGATACATTATGTAGACATATTTTCTCATAAAA-
1 AAAAAGTATCGACACAAA-TTTCAAAAGTGTCGATACATTATGTAGACCTATTCTCTCATAAAAC
* * * * * * *
1265478 TCAGTATATTTCTACCGATTACATTATCAATTTACCTATTACATTGTAATTGTCAGTTTTGATGT
65 T-GGTATATTTATACCGGTTACATTGTAAATTTACCTATTACATTGTAATTATCAGTTTCGATGT
* * *
1265543 TTTTGGGATTGATACAATTTTAAATGTATCGACACTTTATACGTACACCTAGTTTGTCATTCATT
129 TTTTGGGATCGATACAATTTTAAATGTATCGACACTTTATGCGTGCACCTAGTTTGTCATTCATT
*
1265608 ATGGAC
194 CTGGAC
* * * * * *
1265614 AAAAAGTATTGACACAATTTTCAAAAGTGTTGATACATTCTGTAGATCTATTCTCTTATAAAACT
1 AAAAAGTATCGACACAAATTTCAAAAGTGTCGATACATTATGTAGACCTATTCTCTCATAAAACT
* * * * *
1265679 GGTATATTTATACCGGTTACATTGTAAATTTACATATTACATTGTAATTATAAATTTCAATCTTT
66 GGTATATTTATACCGGTTACATTGTAAATTTACCTATTACATTGTAATTATCAGTTTCGATGTTT
* * * *
1265744 TTGGGATCGATATAATTTTAAATGTATCGACACTTTATGTGTGCACCTACTTTGGCATTCATTCT
131 TTGGGATCGATACAATTTTAAATGTATCGACACTTTATGCGTGCACCTAGTTTGTCATTCATTCT
*
1265809 AGAC
196 GGAC
* * * * *
1265813 AAAATGCATCGACATAAATTTCAAAAGTGTCGATACATTATGTAGACATATTCTCTCATAAAACC
1 AAAAAGTATCGACACAAATTTCAAAAGTGTCGATACATTATGTAGACCTATTCTCTCATAAAACT
* * ** *
1265878 GGTATATTTATATCGGTTACATTATAAATTTAGGTATTACATTGTAATTATTAGTTTCGATGTTT
66 GGTATATTTATACCGGTTACATTGTAAATTTACCTATTACATTGTAATTATCAGTTTCGATGTTT
* * * *
1265943 ATGGGATCGATACAATTTTAAATGTATCGGCACTTTATGCGTGCACCTAGTTTATCATTCATTAT
131 TTGGGATCGATACAATTTTAAATGTATCGACACTTTATGCGTGCACCTAGTTTGTCATTCATTCT
*
1266008 GGTC
196 GGAC
* * *
1266012 AAAAAGTATCGACACAAAATTCAAAAGTGTCGATACATTCTGTAGACCTATTCTCTCACAAAACT
1 AAAAAGTATCGACACAAATTTCAAAAGTGTCGATACATTATGTAGACCTATTCTCTCATAAAACT
*
1266077 GGTATATTTATACCGGTTACATTGTAAATTTATCTATTACATTGTAATTATCAGTTTCGATGTTT
66 GGTATATTTATACCGGTTACATTGTAAATTTACCTATTACATTGTAATTATCAGTTTCGATGTTT
* * * *
1266142 TTGGGATAGATGCAATTTTAAATGTATCGAAACATTATGCGTGCACCTAGTTTGTCATTCATTCT
131 TTGGGATCGATACAATTTTAAATGTATCGACACTTTATGCGTGCACCTAGTTTGTCATTCATTCT
1266207 GGAC
196 GGAC
* * *
1266211 -AAAAGTATCGACACAAATTTCAAAACTGTCGATACATTCTGTAGACCTATTCTCTCATAAAATT
1 AAAAAGTATCGACACAAATTTCAAAAGTGTCGATACATTATGTAGACCTATTCTCTCATAAAACT
* * *
1266275 GGTATATTTATATCGGTTACACTGTAAATTTACCTATTATATTGTAATTATCAGTTTCGATGTTT
66 GGTATATTTATACCGGTTACATTGTAAATTTACCTATTACATTGTAATTATCAGTTTCGATGTTT
*
1266340 TTGGGATCGATACAATTTTAAATGTATCGACACTTTATGCGTGCACCTAGTTTGTCATTCATTTT
131 TTGGGATCGATACAATTTTAAATGTATCGACACTTTATGCGTGCACCTAGTTTGTCATTCATTCT
*
1266405 TGAC
196 GGAC
* * *
1266409 AAAAAGT-TCGACACAAATTTCAAAAGTATCGATACATTATGTAGACCTATTCTCTCCTAATACT
1 AAAAAGTATCGACACAAATTTCAAAAGTGTCGATACATTATGTAGACCTATTCTCTCATAAAACT
* **
1266473 GATATATTTATATTGGTTACATTGTAAATTTACCTATTACATTGTAATTATCAGTTTCGATGTTT
66 GGTATATTTATACCGGTTACATTGTAAATTTACCTATTACATTGTAATTATCAGTTTCGATGTTT
* * *
1266538 TTGGGATCGATACAATTTTAAATGTATCAACACTTTATGCGTGCACCTAGTTTGGCATTAATTCT
131 TTGGGATCGATACAATTTTAAATGTATCGACACTTTATGCGTGCACCTAGTTTGTCATTCATTCT
1266603 GGA-
196 GGAC
* * * *
1266606 AAAAATGGATCGACACAAATTTAAAAAGTGTCGATGCATTATGTTGACCTATTCTCTCATAAAA-
1 AAAAA-GTATCGACACAAATTTCAAAAGTGTCGATACATTATGTAGACCTATTCTCTCATAAAAC
* * *
1266670 TCGGTATATTTATACCGGTTACATTGTAAATTTACCTATTACATTATAATTATCGGTTTTGATGT
65 T-GGTATATTTATACCGGTTACATTGTAAATTTACCTATTACATTGTAATTATCAGTTTCGATGT
* *
1266735 TTTTGGTATCGATTCAATTTTAAA
129 TTTTGGGATCGATACAATTTTAAA
1266759 AAATATCGAT
Statistics
Matches: 1014, Mismatches: 126, Indels: 11
0.88 0.11 0.01
Matches are distributed among these distances:
197 5 0.00
198 361 0.36
199 633 0.62
200 15 0.01
ACGTcount: A:0.32, C:0.15, G:0.14, T:0.39
Consensus pattern (199 bp):
AAAAAGTATCGACACAAATTTCAAAAGTGTCGATACATTATGTAGACCTATTCTCTCATAAAACT
GGTATATTTATACCGGTTACATTGTAAATTTACCTATTACATTGTAATTATCAGTTTCGATGTTT
TTGGGATCGATACAATTTTAAATGTATCGACACTTTATGCGTGCACCTAGTTTGTCATTCATTCT
GGAC
Found at i:1271450 original size:15 final size:15
Alignment explanation
Indices: 1271441--1271480 Score: 62
Period size: 15 Copynumber: 2.7 Consensus size: 15
1271431 TCCCTTACCG
*
1271441 TCATCCCCCTCACTA
1 TCATCCCCCTCACCA
*
1271456 TCATCCCCCTCATCA
1 TCATCCCCCTCACCA
1271471 TCATCCCCCT
1 TCATCCCCCT
1271481 AATACCATCT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.17, C:0.55, G:0.00, T:0.28
Consensus pattern (15 bp):
TCATCCCCCTCACCA
Found at i:1271528 original size:9 final size:9
Alignment explanation
Indices: 1271497--1271521 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
1271487 ATCTCTTCTT
1271497 CCTCCACCA
1 CCTCCACCA
1271506 CCTCCACCA
1 CCTCCACCA
1271515 CCTCCAC
1 CCTCCAC
1271522 TTCCTCCTCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.20, C:0.68, G:0.00, T:0.12
Consensus pattern (9 bp):
CCTCCACCA
Found at i:1273487 original size:24 final size:23
Alignment explanation
Indices: 1273453--1273547 Score: 100
Period size: 24 Copynumber: 4.0 Consensus size: 23
1273443 AAACGAAGAT
*
1273453 ATCAGAAATCAAAACAAAATTCAG
1 ATCA-AAATCAGAACAAAATTCAG
* * *
1273477 ATCAAATATCATAACAGAATCCAG
1 ATCAAA-ATCAGAACAAAATTCAG
*
1273501 ATCAGAAATCAGAACAGAATTCAG
1 ATCA-AAATCAGAACAAAATTCAG
*
1273525 ATAAGAAATCAGAACAAAATTCA
1 ATCA-AAATCAGAACAAAATTCA
1273548 AATTGGAAAT
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
23 2 0.03
24 58 0.94
25 2 0.03
ACGTcount: A:0.55, C:0.17, G:0.11, T:0.18
Consensus pattern (23 bp):
ATCAAAATCAGAACAAAATTCAG
Found at i:1273513 original size:12 final size:12
Alignment explanation
Indices: 1273453--1273537 Score: 59
Period size: 12 Copynumber: 7.1 Consensus size: 12
1273443 AAACGAAGAT
*
1273453 ATCAGAAATCAA
1 ATCAGAAATCAG
*
1273465 AACA-AAATTCAG
1 ATCAGAAA-TCAG
*
1273477 ATCA-AATATCAT
1 ATCAGAA-ATCAG
*
1273489 AACAG-AATCCAG
1 ATCAGAAAT-CAG
1273501 ATCAGAAATCAG
1 ATCAGAAATCAG
* *
1273513 AACAGAATTCAG
1 ATCAGAAATCAG
*
1273525 ATAAGAAATCAG
1 ATCAGAAATCAG
1273537 A
1 A
1273538 ACAAAATTCA
Statistics
Matches: 56, Mismatches: 12, Indels: 10
0.72 0.15 0.13
Matches are distributed among these distances:
11 5 0.09
12 47 0.84
13 4 0.07
ACGTcount: A:0.54, C:0.16, G:0.12, T:0.18
Consensus pattern (12 bp):
ATCAGAAATCAG
Found at i:1273556 original size:24 final size:24
Alignment explanation
Indices: 1273456--1273561 Score: 88
Period size: 24 Copynumber: 4.4 Consensus size: 24
1273446 CGAAGATATC
* *
1273456 AGAAATCAAAACAAAATTCAGATCA
1 AGAAATCAGAACAAAATTCAAAT-A
* * * * * *
1273481 A-ATATCATAACAGAATCCAGATC
1 AGAAATCAGAACAAAATTCAAATA
* *
1273504 AGAAATCAGAACAGAATTCAGATA
1 AGAAATCAGAACAAAATTCAAATA
*
1273528 AGAAATCAGAACAAAATTCAAATT
1 AGAAATCAGAACAAAATTCAAATA
*
1273552 GGAAATCAGA
1 AGAAATCAGA
1273562 TAAAACATTC
Statistics
Matches: 67, Mismatches: 13, Indels: 3
0.81 0.16 0.04
Matches are distributed among these distances:
23 1 0.01
24 65 0.97
25 1 0.01
ACGTcount: A:0.55, C:0.15, G:0.12, T:0.18
Consensus pattern (24 bp):
AGAAATCAGAACAAAATTCAAATA
Found at i:1274220 original size:13 final size:13
Alignment explanation
Indices: 1274204--1274233 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
1274194 ACGGCAACAA
1274204 TCAACGGGTCGGG
1 TCAACGGGTCGGG
*
1274217 TCAACGGGTTGGG
1 TCAACGGGTCGGG
1274230 TCAA
1 TCAA
1274234 ACTGCCCCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.20, C:0.20, G:0.40, T:0.20
Consensus pattern (13 bp):
TCAACGGGTCGGG
Found at i:1276256 original size:24 final size:24
Alignment explanation
Indices: 1276228--1276319 Score: 103
Period size: 24 Copynumber: 3.8 Consensus size: 24
1276218 AAACGGAGAT
* **
1276228 ATCAGAAATCAAAACAGAATTTAG
1 ATCAGAAATCAGAACAGAATCCAG
** *
1276252 ATCAGTTATCATAACAGAATCCAG
1 ATCAGAAATCAGAACAGAATCCAG
* * *
1276276 ATCATAAATCAGAATAGAATCCAT
1 ATCAGAAATCAGAACAGAATCCAG
1276300 ATCAGAAATCAGAACAGAAT
1 ATCAGAAATCAGAACAGAAT
1276320 TCAAATTGGA
Statistics
Matches: 55, Mismatches: 13, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
24 55 1.00
ACGTcount: A:0.50, C:0.16, G:0.12, T:0.22
Consensus pattern (24 bp):
ATCAGAAATCAGAACAGAATCCAG
Found at i:1276331 original size:24 final size:24
Alignment explanation
Indices: 1276228--1276336 Score: 92
Period size: 24 Copynumber: 4.5 Consensus size: 24
1276218 AAACGGAGAT
* ** *
1276228 ATCAGAAATCAAAACAGAATTTAG
1 ATCAGAAATCAGAACAGAATCCAA
** * *
1276252 ATCAGTTATCATAACAGAATCCAG
1 ATCAGAAATCAGAACAGAATCCAA
* * *
1276276 ATCATAAATCAGAATAGAATCCAT
1 ATCAGAAATCAGAACAGAATCCAA
*
1276300 ATCAGAAATCAGAACAGAATTCAA
1 ATCAGAAATCAGAACAGAATCCAA
**
1276324 ATTGGAAATCAGA
1 ATCAGAAATCAGA
1276337 TAAAACATTC
Statistics
Matches: 68, Mismatches: 17, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
24 68 1.00
ACGTcount: A:0.50, C:0.16, G:0.13, T:0.22
Consensus pattern (24 bp):
ATCAGAAATCAGAACAGAATCCAA
Found at i:1278828 original size:17 final size:17
Alignment explanation
Indices: 1278806--1278848 Score: 86
Period size: 17 Copynumber: 2.5 Consensus size: 17
1278796 CGGCAACGGT
1278806 AGTCAACGATCGGGTCG
1 AGTCAACGATCGGGTCG
1278823 AGTCAACGATCGGGTCG
1 AGTCAACGATCGGGTCG
1278840 AGTCAACGA
1 AGTCAACGA
1278849 GTCAGGTCAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 26 1.00
ACGTcount: A:0.28, C:0.23, G:0.33, T:0.16
Consensus pattern (17 bp):
AGTCAACGATCGGGTCG
Found at i:1281004 original size:182 final size:182
Alignment explanation
Indices: 1280691--1281353 Score: 888
Period size: 182 Copynumber: 3.6 Consensus size: 182
1280681 TACGCGTACT
* * *
1280691 TATTAAAGTATCGACATTTTCAACATATCCGGTAGCACTTTACC-AGTTTTGTCATTTCAAGACC
1 TATTAAAGTATCGACACTTTCAACATATCCGGTAGCGCTTTACCGA-TTTTGTCATTTCGAGACC
* * * * *
1280755 GGTTTTGTCATATTTTTACCTGTTATATTGTTATGGATTGATATATTTTTATAAAGAATGGACAC
65 GATTTTGTCATATTTTTACCTGTTATATTGTTATGGATCGATACATTTTTATAAAGTATCGACAC
*
1280820 TTTACAGGCGCTATTACTGCTTCTCTTTTAAATTCCAAAAGTGTCGATACTTA
130 TTTATAGGCGCTATTACTGCTTCTCTTTTAAATTCCAAAAGTGTCGATACTTA
* **
1280873 TATTAAAGTATCAACACTTTCAACATATCCGGTAATGCTTTACCGATTTTGTCATTTCGAGACCG
1 TATTAAAGTATCGACACTTTCAACATATCCGGTAGCGCTTTACCGATTTTGTCATTTCGAGACCG
* *
1280938 ATTTTGTCATAATTTTACCTGTTATATTGTTATGGATCGATACATTTTTATAAAGTATCTACACT
66 ATTTTGTCATATTTTTACCTGTTATATTGTTATGGATCGATACATTTTTATAAAGTATCGACACT
* *
1281003 TTATAGCCGCTATTTCTGCTTCTCTTTTAAATTCCAAAAGTGTCGATACTTA
131 TTATAGGCGCTATTACTGCTTCTCTTTTAAATTCCAAAAGTGTCGATACTTA
* * * *
1281055 TATTAAAGTATTGACACTTTCAACATATCCGATAGCGCTTTACCGGTTTTG-CAATTTAGAGACC
1 TATTAAAGTATCGACACTTTCAACATATCCGGTAGCGCTTTACCGATTTTGTC-ATTTCGAGACC
* *
1281119 GATTTTGTCATATTTTTACCTATTATATTGTTATGGATCGATAAATTTTTATAAAGTATCGACAC
65 GATTTTGTCATATTTTTACCTGTTATATTGTTATGGATCGATACATTTTTATAAAGTATCGACAC
* * *
1281184 TTTATAGGCGCTATTATTGCTTCTCTTTTAAATGCCAAAAGTGTGGATACTTA
130 TTTATAGGCGCTATTACTGCTTCTCTTTTAAATTCCAAAAGTGTCGATACTTA
* * * ** * * * *
1281237 T-TTCAATGGAATCGATACTTT-AAGCATATTAGGTAGCGCTTTACTGGTTTTGTCATAAT-GAA
1 TATT-AA-AGTATCGACACTTTCAA-CATATCCGGTAGCGCTTTACCGATTTTGTCAT-TTCGAG
* * *
1281299 ATCG-GTTTGATCATGTTTTTACCTGTTATATTGTTATGGATCGATACATTTTTAT
62 ACCGATTTTG-TCATATTTTTACCTGTTATATTGTTATGGATCGATACATTTTTAT
1281354 TTGTATCGAT
Statistics
Matches: 426, Mismatches: 47, Indels: 15
0.87 0.10 0.03
Matches are distributed among these distances:
181 3 0.01
182 337 0.79
183 84 0.20
184 2 0.00
ACGTcount: A:0.28, C:0.16, G:0.14, T:0.42
Consensus pattern (182 bp):
TATTAAAGTATCGACACTTTCAACATATCCGGTAGCGCTTTACCGATTTTGTCATTTCGAGACCG
ATTTTGTCATATTTTTACCTGTTATATTGTTATGGATCGATACATTTTTATAAAGTATCGACACT
TTATAGGCGCTATTACTGCTTCTCTTTTAAATTCCAAAAGTGTCGATACTTA
Found at i:1282500 original size:18 final size:18
Alignment explanation
Indices: 1282477--1282519 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
1282467 ATGTTCCACG
1282477 AAAAAAATGATTCGAAAA
1 AAAAAAATGATTCGAAAA
* *
1282495 AAAAAAA-GATTTGATAA
1 AAAAAAATGATTCGAAAA
*
1282512 AAGAAAAT
1 AAAAAAAT
1282520 TTTTTTAAAG
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
17 14 0.67
18 7 0.33
ACGTcount: A:0.67, C:0.02, G:0.12, T:0.19
Consensus pattern (18 bp):
AAAAAAATGATTCGAAAA
Found at i:1283503 original size:16 final size:17
Alignment explanation
Indices: 1283472--1283507 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
1283462 CAAAGTTATT
*
1283472 TTTCTTTTCATTTACGC
1 TTTCTTTACATTTACGC
1283489 TTTCTTTAC-TTTACGC
1 TTTCTTTACATTTACGC
1283505 TTT
1 TTT
1283508 TTACCGTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 10 0.56
17 8 0.44
ACGTcount: A:0.11, C:0.22, G:0.06, T:0.61
Consensus pattern (17 bp):
TTTCTTTACATTTACGC
Found at i:1287886 original size:21 final size:21
Alignment explanation
Indices: 1287861--1287920 Score: 93
Period size: 21 Copynumber: 2.9 Consensus size: 21
1287851 ATACCATATA
*
1287861 CCCTCAATATCGATACTCTTC
1 CCCTCAGTATCGATACTCTTC
1287882 CCCTCAGTATCGATACTCTTC
1 CCCTCAGTATCGATACTCTTC
* *
1287903 CCATCAGTATCTATACTC
1 CCCTCAGTATCGATACTC
1287921 CCTGCTAGAA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 36 1.00
ACGTcount: A:0.23, C:0.37, G:0.07, T:0.33
Consensus pattern (21 bp):
CCCTCAGTATCGATACTCTTC
Found at i:1291661 original size:23 final size:23
Alignment explanation
Indices: 1291631--1291678 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
1291621 AACAGTCTCG
1291631 ATTTAACATGGAAATCAACTTAA
1 ATTTAACATGGAAATCAACTTAA
1291654 ATTTAACATGGAAATCAACTTAA
1 ATTTAACATGGAAATCAACTTAA
1291677 AT
1 AT
1291679 CTAATGATCC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.48, C:0.12, G:0.08, T:0.31
Consensus pattern (23 bp):
ATTTAACATGGAAATCAACTTAA
Found at i:1296550 original size:27 final size:27
Alignment explanation
Indices: 1296499--1296550 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
1296489 GTACAATCAT
*
1296499 TTGTGAATAAATTGCACATTTAGTGCC
1 TTGTGAATAAATTGCACATTCAGTGCC
*
1296526 TTGTGAATCAATTGCACCA-TCAGTG
1 TTGTGAATAAATTGCA-CATTCAGTG
1296551 TCATATAACC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
27 20 0.91
28 2 0.09
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.35
Consensus pattern (27 bp):
TTGTGAATAAATTGCACATTCAGTGCC
Found at i:1297004 original size:24 final size:25
Alignment explanation
Indices: 1296960--1297006 Score: 69
Period size: 24 Copynumber: 1.9 Consensus size: 25
1296950 CTTAATATTC
*
1296960 AAAATCATTCATAAACCATTTTAGA
1 AAAATCATTCATAAAACATTTTAGA
*
1296985 AAAATCATT-ATAAAATATTTTA
1 AAAATCATTCATAAAACATTTTA
1297007 TAATATGATT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 11 0.55
25 9 0.45
ACGTcount: A:0.51, C:0.11, G:0.02, T:0.36
Consensus pattern (25 bp):
AAAATCATTCATAAAACATTTTAGA
Found at i:1301500 original size:69 final size:65
Alignment explanation
Indices: 1301294--1301625 Score: 283
Period size: 69 Copynumber: 5.1 Consensus size: 65
1301284 AGAGATTTAC
*
1301294 TCAAAA-ATAT-A-TATCTTTTAATATTC-AATTTAAATAGATAATATCTTTTAATTTGAAATAT
1 TCAAAAGATATAATTATCTTTTAATATTCAAATTTAAATAGATAATATATTTTAATTTGAAATAT
* * * * * *
1301355 TCAAAAGATATAA--ACCTTTTAACATTCAAACTTAAATAGA-AAT-TATTTTAACTTGAAAAAA
1 TCAAAAGATATAATTATCTTTTAATATTCAAATTTAAATAGATAATATATTTTAATTTGAAATAT
* * *
1301416 TCAAAATGATGTAATTATTTTTTAATATTCAAATTTAAATAGATAATAAATAATTTTATTTTGAA
1 TCAAAA-GATATAATTATCTTTTAATATTCAAATTTAAATAGATAAT--AT-ATTTTAATTTGAA
1301481 ATAT
62 ATAT
* * *
1301485 TCAAAAGAATATAATTATCTTTTAATATTCAGAGTTAAAT-GAATAATAAATACTTTTTAGTTTG
1 TCAAAAG-ATATAATTATCTTTTAATATTCAAATTTAAATAG-ATAAT--ATA--TTTTAATTTG
*
1301549 AAATGT
60 AAATAT
* ** * * *
1301555 TCAAATGA-ATAATTATACTGCTAATATTCAAA-TCAAGA-AGAAAAATATATTTTAATTTGGAA
1 TCAAAAGATATAATTAT-CTTTTAATATTCAAATTTAA-ATAG-ATAATATATTTTAATTTGAAA
1301617 TAT
63 TAT
1301620 TCAAAA
1 TCAAAA
1301626 AGGGATATGA
Statistics
Matches: 221, Mismatches: 32, Indels: 32
0.78 0.11 0.11
Matches are distributed among these distances:
61 26 0.12
62 25 0.11
63 12 0.05
64 23 0.10
65 21 0.10
67 3 0.01
68 15 0.07
69 76 0.34
70 20 0.09
ACGTcount: A:0.46, C:0.07, G:0.07, T:0.40
Consensus pattern (65 bp):
TCAAAAGATATAATTATCTTTTAATATTCAAATTTAAATAGATAATATATTTTAATTTGAAATAT
Found at i:1306675 original size:49 final size:51
Alignment explanation
Indices: 1306590--1306692 Score: 122
Period size: 49 Copynumber: 2.1 Consensus size: 51
1306580 GTGTAAATTG
*
1306590 AAAGGACAGTAGCCCAAATCAGAAATACATAATGACTAAAATTCATAAAAT
1 AAAGGACAGTAGCCCAAATCAGAAATACATAATGACTAAAATACATAAAAT
* * * * *
1306641 AAAGGAC-GTAG-CTAAATCATAAATA-AGTAGTGACTGAAATACATAAATT
1 AAAGGACAGTAGCCCAAATCAGAAATACA-TAATGACTAAAATACATAAAAT
1306690 AAA
1 AAA
1306693 AATACAACAC
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
48 1 0.02
49 33 0.73
50 4 0.09
51 7 0.16
ACGTcount: A:0.52, C:0.13, G:0.14, T:0.21
Consensus pattern (51 bp):
AAAGGACAGTAGCCCAAATCAGAAATACATAATGACTAAAATACATAAAAT
Found at i:1308130 original size:238 final size:239
Alignment explanation
Indices: 1307686--1308133 Score: 695
Period size: 238 Copynumber: 1.9 Consensus size: 239
1307676 TATAGATGAT
* * * * *
1307686 CCGATGGATTTACTAAGTAAGAATCTTTGGAAATCGTTTTCTTACTTTTCAAAAATCAATTTTTA
1 CCGAAGGACTTACTAAGTAAGAAACTTTGGAAATCGTTTTCTTACTTTTAAAAAACCAATTTTTA
*
1307751 GAAAAGATTTAAATGAGGAACTTTGGAAATCGCTTTCTCATTTTTTTGAAAATCATATGGAAACA
66 GAAAAGATTTAAATGAGGAACTTTGGAAATCGCTTTCTCATTTTTTTGAAAATCATATGAAAACA
* ** * *
1307816 TCATGCCTGAAGGTCTTATAGATGGCCTGAAAGACCTATCATCTTGCTTGTAAGACTTACACATA
131 TCATACCCAAAGGTCTTATAGATGGCCTGAAAGACCTATCATCTTGCTCGAAAGACTTACACATA
1307881 ACCCAAAGGATTTAAGCATCATGCACGAAACACTTACTGATGGC
196 ACCCAAAGGATTTAAGCATCATGCACGAAACACTTACTGATGGC
1307925 CCGAAGGACTTACTAAGTAA-AAACTTTGGAAATCGTTTTCTTACTTTTAAAAAACCAATTTTTA
1 CCGAAGGACTTACTAAGTAAGAAACTTTGGAAATCGTTTTCTTACTTTTAAAAAACCAATTTTTA
*
1307989 GAGAAGATTTAAATGA-GACACTTTGGAAATCGCTTTCTCATTTTTTTGAAAATCATATGAAAAC
66 GAAAAGATTTAAATGAGGA-ACTTTGGAAATCGCTTTCTCATTTTTTTGAAAATCATATGAAAAC
* * * *
1308053 ATCCTACCCAAAGGTCTTATGGATGGCCT-AAAGGACTTATCATCTTGCTCGAAAGACTTACAGA
130 ATCATACCCAAAGGTCTTATAGATGGCCTGAAA-GACCTATCATCTTGCTCGAAAGACTTACACA
* *
1308117 TGACCCGAAGGATTTAA
194 TAACCCAAAGGATTTAA
1308134 AGATCACACT
Statistics
Matches: 189, Mismatches: 18, Indels: 5
0.89 0.08 0.02
Matches are distributed among these distances:
237 5 0.03
238 166 0.88
239 18 0.10
ACGTcount: A:0.35, C:0.17, G:0.16, T:0.32
Consensus pattern (239 bp):
CCGAAGGACTTACTAAGTAAGAAACTTTGGAAATCGTTTTCTTACTTTTAAAAAACCAATTTTTA
GAAAAGATTTAAATGAGGAACTTTGGAAATCGCTTTCTCATTTTTTTGAAAATCATATGAAAACA
TCATACCCAAAGGTCTTATAGATGGCCTGAAAGACCTATCATCTTGCTCGAAAGACTTACACATA
ACCCAAAGGATTTAAGCATCATGCACGAAACACTTACTGATGGC
Found at i:1308326 original size:53 final size:52
Alignment explanation
Indices: 1308237--1308570 Score: 276
Period size: 53 Copynumber: 6.2 Consensus size: 52
1308227 TTACAGTTTT
* *
1308237 CATCAAGAAACCCCTAAAAATTAGACTTCGCTTCTTTAAAAATGCATTTGAAAA
1 CATCAAGAAA-CCCTAAAAATTAGGCTTAGCTTCTTTAAAAAT-CATTTGAAAA
* * * *
1308291 CATCAAGAAACCCTAGAAATCAGGCTTAGCTTCTTTCAAATTCATTTGAAAA
1 CATCAAGAAACCCTAAAAATTAGGCTTAGCTTCTTTAAAAATCATTTGAAAA
* * *
1308343 CATCAAGAAAACCCTAAAAATTAGGCTTATCTTCTTTCAAATTCATTTGAAAA
1 CATCAAG-AAACCCTAAAAATTAGGCTTAGCTTCTTTAAAAATCATTTGAAAA
* * ** ** *
1308396 TATCAAGAAACCCATAAAAATTAAGCTTAATTTCTTTGAAAGCTCATTTAAAAA
1 CATCAAGAAACCC-TAAAAATTAGGCTTAGCTTCTTT-AAAAATCATTTGAAAA
* * * ** * *
1308450 TCATCAAGAAACTTCTGAAAATCATACTTAGTTTCTTTAAAAGCTCATTTGAAAA
1 -CATCAAGAAAC-CCTAAAAATTAGGCTTAGCTTCTTTAAAA-ATCATTTGAAAA
** ** *
1308505 TTTTCAAGAAACTTTCAAAAATT-GGACTTAGTTTCTTTAAAAACTCATTT-AAAA
1 -CATCAAGAAACCCT-AAAAATTAGG-CTTAGCTTCTTTAAAAA-TCATTTGAAAA
*
1308559 TCATCAGGAAAC
1 -CATCAAGAAAC
1308571 TTTTGAAAAT
Statistics
Matches: 234, Mismatches: 37, Indels: 18
0.81 0.13 0.06
Matches are distributed among these distances:
52 23 0.10
53 94 0.40
54 40 0.17
55 76 0.32
56 1 0.00
ACGTcount: A:0.42, C:0.18, G:0.09, T:0.32
Consensus pattern (52 bp):
CATCAAGAAACCCTAAAAATTAGGCTTAGCTTCTTTAAAAATCATTTGAAAA
Found at i:1308471 original size:55 final size:55
Alignment explanation
Indices: 1308236--1308655 Score: 289
Period size: 55 Copynumber: 7.8 Consensus size: 55
1308226 TTTACAGTTT
** * * * * *
1308236 TCATCAAGAAACCCCTAAAAATT-AGACTTCGCTTCTTTAAAA-ATGCATTTGAAAA
1 TCATCAAGAAACTTCTGAAAATTAAG-CTTAGTTTCTTTAAAAGCT-CATTTAAAAA
* * * * * * *
1308291 -CATCAAGAAAC-CCT-AGAAATCAGGCTTAGCTTCTTTCAAA-TTCATTTGAAAA
1 TCATCAAGAAACTTCTGA-AAATTAAGCTTAGTTTCTTTAAAAGCTCATTTAAAAA
* * * * * *
1308343 -CATCAAGAAAAC-CCTAAAAATTAGGCTTA-TCTTCTTTCAAA-TTCATTTGAAAA
1 TCATCAAG-AAACTTCTGAAAATTAAGCTTAGT-TTCTTTAAAAGCTCATTTAAAAA
* * * *
1308396 T-ATCAAGAAAC-CCATAAAAATTAAGCTTAATTTCTTTGAAAGCTCATTTAAAAA
1 TCATCAAGAAACTTC-TGAAAATTAAGCTTAGTTTCTTTAAAAGCTCATTTAAAAA
* *
1308450 TCATCAAGAAACTTCTGAAAATCATA-CTTAGTTTCTTTAAAAGCTCATTTGAAAA
1 TCATCAAGAAACTTCTGAAAATTA-AGCTTAGTTTCTTTAAAAGCTCATTTAAAAA
** * * *
1308505 TTTTCAAGAAACTT-TCAAAAATT-GGACTTAGTTTCTTTAAAAACTCATTT-AAAA
1 TCATCAAGAAACTTCT-GAAAATTAAG-CTTAGTTTCTTTAAAAGCTCATTTAAAAA
* * * *
1308559 TCATCAGGAAACTTTTGAAAATTAAACTTAGTTTCTTTGAAAGCTCATTTAAAAA
1 TCATCAAGAAACTTCTGAAAATTAAGCTTAGTTTCTTTAAAAGCTCATTTAAAAA
* * *
1308614 TAATCAAGAAACTTCCGAAAATCGAA-CTTAGTTTCTTTAAAA
1 TCATCAAGAAACTTCTGAAAAT-TAAGCTTAGTTTCTTTAAAA
1308656 AATCATGTTA
Statistics
Matches: 309, Mismatches: 37, Indels: 38
0.80 0.10 0.10
Matches are distributed among these distances:
52 24 0.08
53 91 0.29
54 69 0.22
55 121 0.39
56 4 0.01
ACGTcount: A:0.41, C:0.17, G:0.09, T:0.33
Consensus pattern (55 bp):
TCATCAAGAAACTTCTGAAAATTAAGCTTAGTTTCTTTAAAAGCTCATTTAAAAA
Found at i:1308578 original size:109 final size:109
Alignment explanation
Indices: 1308421--1308666 Score: 330
Period size: 109 Copynumber: 2.2 Consensus size: 109
1308411 AAAAATTAAG
* * * *
1308421 CTTAATTTCTTTGAAAGCTCATTTAAAAATCATCAAGAAACTTCTGAAAATCATACTTAGTTTCT
1 CTTAGTTTCTTTAAAAACTCATTT-AAAATCATCAAGAAACTTCTGAAAATCAAACTTAGTTTCT
* ** * * *
1308486 TTAAAAGCTCATTTGAAAATTTTCAAGAAACTTTCAAAAATTGGA
65 TTAAAAGCTCATTTAAAAATAATCAAGAAACTTCCAAAAATCGAA
* * *
1308531 CTTAGTTTCTTTAAAAACTCATTTAAAATCATCAGGAAACTTTTGAAAATTAAACTTAGTTTCTT
1 CTTAGTTTCTTTAAAAACTCATTTAAAATCATCAAGAAACTTCTGAAAATCAAACTTAGTTTCTT
* *
1308596 TGAAAGCTCATTTAAAAATAATCAAGAAACTTCCGAAAATCGAA
66 TAAAAGCTCATTTAAAAATAATCAAGAAACTTCCAAAAATCGAA
*
1308640 CTTAGTTTCTTTAAAAAATCATGTTAA
1 CTTAGTTTCTTTAAAAACTCAT-TTAA
1308667 CTGAGTAACA
Statistics
Matches: 119, Mismatches: 16, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
109 94 0.79
110 25 0.21
ACGTcount: A:0.41, C:0.14, G:0.09, T:0.36
Consensus pattern (109 bp):
CTTAGTTTCTTTAAAAACTCATTTAAAATCATCAAGAAACTTCTGAAAATCAAACTTAGTTTCTT
TAAAAGCTCATTTAAAAATAATCAAGAAACTTCCAAAAATCGAA
Found at i:1309954 original size:28 final size:28
Alignment explanation
Indices: 1309913--1309990 Score: 113
Period size: 28 Copynumber: 2.8 Consensus size: 28
1309903 GGCTGACTTA
*
1309913 GGAAGGTAATGTGTTTCATGTTAATTTGG
1 GGAA-GTAATGTGTTTCAGGTTAATTTGG
*
1309942 GGAAGTAATGTGTTTCGGGTTAATTTGG
1 GGAAGTAATGTGTTTCAGGTTAATTTGG
1309970 GG-AGATAATGTGTTTCAGGTT
1 GGAAG-TAATGTGTTTCAGGTT
1309991 GGCTTCTTAC
Statistics
Matches: 45, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
27 2 0.04
28 39 0.87
29 4 0.09
ACGTcount: A:0.23, C:0.04, G:0.33, T:0.40
Consensus pattern (28 bp):
GGAAGTAATGTGTTTCAGGTTAATTTGG
Found at i:1313846 original size:20 final size:19
Alignment explanation
Indices: 1313813--1313870 Score: 80
Period size: 20 Copynumber: 2.9 Consensus size: 19
1313803 CCCCTTCAAA
*
1313813 GGGGGAATCGGTTCCCTCAT
1 GGGGGGATC-GTTCCCTCAT
1313833 GGGGGGATCAGTTCCCTCAT
1 GGGGGGATC-GTTCCCTCAT
1313853 GGGGGGATCGATTCCCTC
1 GGGGGGATCG-TTCCCTC
1313871 TGCACCAAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
19 1 0.03
20 34 0.97
ACGTcount: A:0.14, C:0.26, G:0.36, T:0.24
Consensus pattern (19 bp):
GGGGGGATCGTTCCCTCAT
Found at i:1317719 original size:22 final size:21
Alignment explanation
Indices: 1317677--1317716 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
1317667 GAGTTTGTTT
*
1317677 TCATTTTTCAATTTTGAAACA
1 TCATTTTTCAATTTTAAAACA
1317698 TCATTTTT-ATATTTTAAAA
1 TCATTTTTCA-ATTTTAAAA
1317717 ACAATTTCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 1 0.06
21 16 0.94
ACGTcount: A:0.35, C:0.10, G:0.03, T:0.53
Consensus pattern (21 bp):
TCATTTTTCAATTTTAAAACA
Found at i:1321732 original size:20 final size:20
Alignment explanation
Indices: 1321707--1321749 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
1321697 GTAAAGATGA
1321707 AAAGATGCACATGCAAATGC
1 AAAGATGCACATGCAAATGC
1321727 AAAGATGCACATGCAAATGC
1 AAAGATGCACATGCAAATGC
1321747 AAA
1 AAA
1321750 TGGAAAATGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.49, C:0.19, G:0.19, T:0.14
Consensus pattern (20 bp):
AAAGATGCACATGCAAATGC
Found at i:1327856 original size:87 final size:87
Alignment explanation
Indices: 1327642--1327894 Score: 303
Period size: 87 Copynumber: 2.9 Consensus size: 87
1327632 GCTGATCTTT
* * * * *
1327642 CTCCTTCTATGATAGAATCGAGCTAAAAGTTGACGTTGATCCAACTCCTTCTGCGATGTATTTGA
1 CTCCTTCTGTGATAGAATCGAGCTAAAATTTGACGCTGATCTAACTCCTTCTGCGATGGATTTGA
* *
1327707 GCGAAAATAAAAATGTCGATTTAC
66 GCG-AAA-AAAAATGTCAATCTAC
* * * * **
1327731 CTCCTTCTGTGATGGAATCGAAC-GAGATGTTGTTGCTGATCT-ACATCCTTCTGCGATGGATTT
1 CTCCTTCTGTGATAGAATCGAGCTAAAAT-TTGACGCTGATCTAAC-TCCTTCTGCGATGGATTT
*
1327794 AAGCGAAAAAAAATGTCAATCTAC
64 GAGCGAAAAAAAATGTCAATCTAC
* *
1327818 CTCCTTCTGTGATAGAATTGAGCTAAAATTTGACGCTGATCTAACTCCTTCTACGATGGATTTGA
1 CTCCTTCTGTGATAGAATCGAGCTAAAATTTGACGCTGATCTAACTCCTTCTGCGATGGATTTGA
1327883 GCGAAAATAAAA
66 GCGAAAA-AAAA
1327895 ATGTTGATCC
Statistics
Matches: 136, Mismatches: 23, Indels: 11
0.80 0.14 0.06
Matches are distributed among these distances:
87 70 0.51
88 16 0.12
89 50 0.37
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Consensus pattern (87 bp):
CTCCTTCTGTGATAGAATCGAGCTAAAATTTGACGCTGATCTAACTCCTTCTGCGATGGATTTGA
GCGAAAAAAAATGTCAATCTAC
Found at i:1328098 original size:129 final size:129
Alignment explanation
Indices: 1327812--1328113 Score: 383
Period size: 129 Copynumber: 2.3 Consensus size: 129
1327802 AAAAATGTCA
* * * * *
1327812 ATCTACCTCCTTCTGTGATAGAATTGAGCTAAAATTTGACGCTGATCTAACTCCTTCTACGATGG
1 ATCTACCTCCTTCTGTGATAGAATCGAGC-AAAAGTTGATGCTGATCCAACTCATTCTACGATGG
* * * * * *
1327877 ATTTGAGCGAAAATAAAAATGTTGATCCATCTCCTTTGTTATGGAAACGAACGAGATATCAGTGC
65 ATTTGAGCG--AATAAAAATGTCGATCCACCTCATCTGTGATGGAAACAAACGAGATATCAGTGC
1327942 TG
128 TG
* *
1327944 ATCTACCTCATTCTGTGATAGAATCGAGCAAAAGGTTGATGCTGATCCAACTCATTCTGCGATGG
1 ATCTACCTCCTTCTGTGATAGAATCGAGCAAAA-GTTGATGCTGATCCAACTCATTCTACGATGG
* * * *
1328009 ATTTGAGTG-A-AAAAATGTCGATCCACCTCATCCTGTGATGGAATCAAACGAGATATCGGTGTT
65 ATTTGAGCGAATAAAAATGTCGATCCACCTCAT-CTGTGATGGAAACAAACGAGATATCAGTGCT
1328072 G
129 G
1328073 ATCTACCTCCTTCTGTGATAGAATCGAGCAAAACGTTGATG
1 ATCTACCTCCTTCTGTGATAGAATCGAGCAAAA-GTTGATG
1328114 TTTAGCCCCT
Statistics
Matches: 149, Mismatches: 19, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
128 18 0.12
129 66 0.44
131 4 0.03
132 61 0.41
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.30
Consensus pattern (129 bp):
ATCTACCTCCTTCTGTGATAGAATCGAGCAAAAGTTGATGCTGATCCAACTCATTCTACGATGGA
TTTGAGCGAATAAAAATGTCGATCCACCTCATCTGTGATGGAAACAAACGAGATATCAGTGCTG
Found at i:1328223 original size:39 final size:39
Alignment explanation
Indices: 1328150--1328355 Score: 315
Period size: 39 Copynumber: 5.3 Consensus size: 39
1328140 CGTTTAAAAA
* * *
1328150 AAACAATCTCAAGGGAGAT-AAATCTTTTGTTTCGAGTG
1 AAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGTG
*
1328188 AAACTATCTCAAGCGAGATAAAATCTTCTCTTTCGAGTG
1 AAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGTG
* *
1328227 AAACTATCTCAAGTGAGATAAAATCTTTTGTTTCGAGTG
1 AAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGTG
*
1328266 AAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGG
1 AAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGTG
* * *
1328305 AAACTATCTCAAGCGAGATAAAATTTTATGTTTCGAGGG
1 AAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGTG
1328344 AAACTATCTCAA
1 AAACTATCTCAA
1328356 CTGTTTCGAA
Statistics
Matches: 155, Mismatches: 12, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
38 17 0.11
39 138 0.89
ACGTcount: A:0.35, C:0.16, G:0.18, T:0.31
Consensus pattern (39 bp):
AAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGTG
Found at i:1328224 original size:20 final size:20
Alignment explanation
Indices: 1328201--1328302 Score: 52
Period size: 20 Copynumber: 5.2 Consensus size: 20
1328191 CTATCTCAAG
1328201 CGAGATAAAATCTTCTCTTT
1 CGAGATAAAATCTTCTCTTT
* **
1328221 CGAG-TGAAA-CTATCTCAAGT
1 CGAGATAAAATCT-TCTC-TTT
* *
1328241 -GAGATAAAATCTTTTGTTT
1 CGAGATAAAATCTTCTCTTT
* ***
1328260 CGAG-TGAAA-CTATCTCAAG
1 CGAGATAAAATCT-TCTCTTT
*
1328279 CGAGATAAAATCTTCTGTTT
1 CGAGATAAAATCTTCTCTTT
1328299 CGAG
1 CGAG
1328303 GGAAACTATC
Statistics
Matches: 55, Mismatches: 19, Indels: 16
0.61 0.21 0.18
Matches are distributed among these distances:
18 4 0.07
19 22 0.40
20 25 0.45
21 4 0.07
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Consensus pattern (20 bp):
CGAGATAAAATCTTCTCTTT
Found at i:1328369 original size:24 final size:24
Alignment explanation
Indices: 1328333--1328379 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
1328323 TAAAATTTTA
*
1328333 TGTTTCGAGGGAAACTATCTCAAC
1 TGTTTCGAAGGAAACTATCTCAAC
1328357 TGTTTCGAAGGAAACTATCTCAA
1 TGTTTCGAAGGAAACTATCTCAA
1328380 GCGAGTTAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.32, C:0.19, G:0.19, T:0.30
Consensus pattern (24 bp):
TGTTTCGAAGGAAACTATCTCAAC
Found at i:1328402 original size:63 final size:63
Alignment explanation
Indices: 1328293--1328419 Score: 209
Period size: 63 Copynumber: 2.0 Consensus size: 63
1328283 ATAAAATCTT
* * *
1328293 CTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATTTTATGTTTCGAGGGAAACTATCTCAA
1 CTGTTTCGAAGGAAACTATCTCAAGCGAGATAAAATCTTATATTTCGAGGGAAACTATCTCAA
* *
1328356 CTGTTTCGAAGGAAACTATCTCAAGCGAGTTAAAATCTTCTATTTCGAGGGAAACTATCTCAA
1 CTGTTTCGAAGGAAACTATCTCAAGCGAGATAAAATCTTATATTTCGAGGGAAACTATCTCAA
1328419 C
1 C
1328420 CGAGAAAAAA
Statistics
Matches: 59, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
63 59 1.00
ACGTcount: A:0.33, C:0.18, G:0.19, T:0.30
Consensus pattern (63 bp):
CTGTTTCGAAGGAAACTATCTCAAGCGAGATAAAATCTTATATTTCGAGGGAAACTATCTCAA
Found at i:1328413 original size:39 final size:39
Alignment explanation
Indices: 1328359--1328622 Score: 357
Period size: 39 Copynumber: 6.8 Consensus size: 39
1328349 ATCTCAACTG
* **
1328359 TTTCGAAGGAAACTATCTCAAGCGAGTTAAAATCTTCTA
1 TTTCGAGGGAAACTATCTCAAGCGAGACAAAATCTTCTA
* * *
1328398 TTTCGAGGGAAACTATCTCAACCGAGAAAAAATCATCTA
1 TTTCGAGGGAAACTATCTCAAGCGAGACAAAATCTTCTA
** *
1328437 TTTCGAGGGAAACTATCTCAAGTTAGACAAAATCCTCTA
1 TTTCGAGGGAAACTATCTCAAGCGAGACAAAATCTTCTA
*
1328476 TTTCGAGGGAAACTATCTCAAGCGAGACAAAATCTTCTG
1 TTTCGAGGGAAACTATCTCAAGCGAGACAAAATCTTCTA
* *
1328515 TTTCAAGGGAAACTATCTCAAGCGAGACAAAATCTTCTG
1 TTTCGAGGGAAACTATCTCAAGCGAGACAAAATCTTCTA
* * ** *
1328554 TTTCAAGGGAAACTATCTGAAGTAAGACAAAATCTTCTG
1 TTTCGAGGGAAACTATCTCAAGCGAGACAAAATCTTCTA
* *
1328593 TTTCAAGGGAAACTATCTCAAGAGAGACAA
1 TTTCGAGGGAAACTATCTCAAGCGAGACAA
1328623 TCTTCTTTAA
Statistics
Matches: 204, Mismatches: 21, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 204 1.00
ACGTcount: A:0.38, C:0.19, G:0.17, T:0.26
Consensus pattern (39 bp):
TTTCGAGGGAAACTATCTCAAGCGAGACAAAATCTTCTA
Found at i:1328441 original size:102 final size:102
Alignment explanation
Indices: 1328255--1328457 Score: 318
Period size: 102 Copynumber: 2.0 Consensus size: 102
1328245 TAAAATCTTT
* *
1328255 TGTTTCGAGTGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCG
1 TGTTTCGAGTGAAACTATCTCAAGCGAGATAAAATCTTCTATTTCGAGGGAAACTATCTCAACCG
* ** *
1328320 AGATAAAATTTTATGTTTCGAGGGAAACTATCTCAAC
66 AGAAAAAATCATATATTTCGAGGGAAACTATCTCAAC
*
1328357 TGTTTCGAAG-GAAACTATCTCAAGCGAGTTAAAATCTTCTATTTCGAGGGAAACTATCTCAACC
1 TGTTTCG-AGTGAAACTATCTCAAGCGAGATAAAATCTTCTATTTCGAGGGAAACTATCTCAACC
*
1328421 GAGAAAAAATCATCTATTTCGAGGGAAACTATCTCAA
65 GAGAAAAAATCATATATTTCGAGGGAAACTATCTCAA
1328458 GTTAGACAAA
Statistics
Matches: 92, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
102 90 0.98
103 2 0.02
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.29
Consensus pattern (102 bp):
TGTTTCGAGTGAAACTATCTCAAGCGAGATAAAATCTTCTATTTCGAGGGAAACTATCTCAACCG
AGAAAAAATCATATATTTCGAGGGAAACTATCTCAAC
Found at i:1328480 original size:141 final size:141
Alignment explanation
Indices: 1328218--1328496 Score: 398
Period size: 141 Copynumber: 2.0 Consensus size: 141
1328208 AAATCTTCTC
* * * * *
1328218 TTTCGAGTGAAACTATCTCAAGTGAGATAAAATCTTTTGTTTCGAGTGAAACTATCTCAAGCGAG
1 TTTCGAGTGAAACTATCTCAAGCGAGATAAAATCTTCTATTTCGAGGGAAACTATCTCAACCGAG
* * * * ** *
1328283 ATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATTTTATGTTTCGAGGGAAAC
66 AAAAAATCATCTATTTCGAGGGAAACTATCTCAAGCGAGACAAAATCCTATATTTCGAGGGAAAC
1328348 TATCTCAACTG
131 TATCTCAACTG
*
1328359 TTTCGAAG-GAAACTATCTCAAGCGAGTTAAAATCTTCTATTTCGAGGGAAACTATCTCAACCGA
1 TTTCG-AGTGAAACTATCTCAAGCGAGATAAAATCTTCTATTTCGAGGGAAACTATCTCAACCGA
** *
1328423 GAAAAAATCATCTATTTCGAGGGAAACTATCTCAAGTTAGACAAAATCCTCTATTTCGAGGGAAA
65 GAAAAAATCATCTATTTCGAGGGAAACTATCTCAAGCGAGACAAAATCCTATATTTCGAGGGAAA
1328488 CTATCTCAA
130 CTATCTCAA
1328497 GCGAGACAAA
Statistics
Matches: 121, Mismatches: 16, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
141 119 0.98
142 2 0.02
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.30
Consensus pattern (141 bp):
TTTCGAGTGAAACTATCTCAAGCGAGATAAAATCTTCTATTTCGAGGGAAACTATCTCAACCGAG
AAAAAATCATCTATTTCGAGGGAAACTATCTCAAGCGAGACAAAATCCTATATTTCGAGGGAAAC
TATCTCAACTG
Found at i:1328482 original size:180 final size:180
Alignment explanation
Indices: 1328177--1328535 Score: 531
Period size: 180 Copynumber: 2.0 Consensus size: 180
1328167 ATAAATCTTT
* * **
1328177 TGTTTCGAGTGAAACTATCTCAAGCGAGATAAAATCTTCTCTTTCGAGTGAAACTATCTCAAGTG
1 TGTTTCGAGTGAAACTATCTCAAGCGAGATAAAATCTTCTATTTCGAGGGAAACTATCTCAACCG
* * * * * * * *
1328242 AGATAAAATCTTTTGTTTCGAGTGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAA
66 AGAAAAAATCATCTATTTCGAGGGAAACTATCTCAAGCGAGACAAAATCCTCTATTTCGAGGGAA
* * *
1328307 ACTATCTCAAGCGAGATAAAATTTTATGTTTCGAGGGAAACTATCTCAAC
131 ACTATCTCAAGCGAGACAAAATCTTATGTTTCAAGGGAAACTATCTCAAC
*
1328357 TGTTTCGAAG-GAAACTATCTCAAGCGAGTTAAAATCTTCTATTTCGAGGGAAACTATCTCAACC
1 TGTTTCG-AGTGAAACTATCTCAAGCGAGATAAAATCTTCTATTTCGAGGGAAACTATCTCAACC
**
1328421 GAGAAAAAATCATCTATTTCGAGGGAAACTATCTCAAGTTAGACAAAATCCTCTATTTCGAGGGA
65 GAGAAAAAATCATCTATTTCGAGGGAAACTATCTCAAGCGAGACAAAATCCTCTATTTCGAGGGA
*
1328486 AACTATCTCAAGCGAGACAAAATCTTCTGTTTCAAGGGAAACTATCTCAA
130 AACTATCTCAAGCGAGACAAAATCTTATGTTTCAAGGGAAACTATCTCAA
1328536 GCGAGACAAA
Statistics
Matches: 159, Mismatches: 19, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
180 157 0.99
181 2 0.01
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.30
Consensus pattern (180 bp):
TGTTTCGAGTGAAACTATCTCAAGCGAGATAAAATCTTCTATTTCGAGGGAAACTATCTCAACCG
AGAAAAAATCATCTATTTCGAGGGAAACTATCTCAAGCGAGACAAAATCCTCTATTTCGAGGGAA
ACTATCTCAAGCGAGACAAAATCTTATGTTTCAAGGGAAACTATCTCAAC
Found at i:1328728 original size:76 final size:75
Alignment explanation
Indices: 1328631--1328868 Score: 309
Period size: 76 Copynumber: 3.1 Consensus size: 75
1328621 AATCTTCTTT
* ** * *
1328631 AAAAACAATCTTGAGTGAAATGAAATTTCTTCTTTTAAGTAAAAACTATCTCAAGCGAGACAAAT
1 AAAAACAATCTTGAGTCAAATGAAATTTCTTCTTTCGAGTAAAAATTATCTCAAGTGAGACAAAT
1328696 ATTATTTTAAG
66 -TTATTTTAAG
* *
1328707 AAAAACAATCTTGAGTCAAATG-AATCTTCTTGTTTCGAGTAAAAATTATCCCAAGTGAGACAAA
1 AAAAACAATCTTGAGTCAAATGAAAT-TTCTTCTTTCGAGTAAAAATTATCTCAAGTGAGACAAA
*
1328771 TCTTCTTTTAAG
65 T-TTATTTTAAG
* * *
1328783 AAAAACAATCTTGAGTCAAATGAAATGTCTTCTTTCGAGT-AAAATTGTCTCATGTGAGACAAAG
1 AAAAACAATCTTGAGTCAAATGAAATTTCTTCTTTCGAGTAAAAATTATCTCAAGTGAGACAAA-
* *
1328847 TCTGTTTTAAG
65 TTTATTTTAAG
1328858 AAAAACAATCT
1 AAAAACAATCT
1328869 CAAGTGAGAT
Statistics
Matches: 143, Mismatches: 16, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
75 42 0.29
76 98 0.69
77 3 0.02
ACGTcount: A:0.40, C:0.14, G:0.13, T:0.32
Consensus pattern (75 bp):
AAAAACAATCTTGAGTCAAATGAAATTTCTTCTTTCGAGTAAAAATTATCTCAAGTGAGACAAAT
TTATTTTAAG
Found at i:1335796 original size:18 final size:20
Alignment explanation
Indices: 1335752--1335796 Score: 53
Period size: 18 Copynumber: 2.5 Consensus size: 20
1335742 ATTTTTAAAT
*
1335752 ATATTTTCTTATTTTTGTAA
1 ATATTTTCTTATGTTTGTAA
1335772 ATA--TTCTT-TGTTT-TAA
1 ATATTTTCTTATGTTTGTAA
1335788 ATATTTTCT
1 ATATTTTCT
1335797 GACTTTTTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 6
0.76 0.03 0.21
Matches are distributed among these distances:
16 6 0.27
17 4 0.18
18 9 0.41
20 3 0.14
ACGTcount: A:0.24, C:0.07, G:0.04, T:0.64
Consensus pattern (20 bp):
ATATTTTCTTATGTTTGTAA
Found at i:1336548 original size:162 final size:162
Alignment explanation
Indices: 1336371--1336690 Score: 640
Period size: 162 Copynumber: 2.0 Consensus size: 162
1336361 ACTTGGATTA
1336371 TATAGATAGATTTAACTTGGATAATTGGATTATATAGGTGTGGATTATAATTTATCTTGACTATC
1 TATAGATAGATTTAACTTGGATAATTGGATTATATAGGTGTGGATTATAATTTATCTTGACTATC
1336436 CAATTTGTAATAGGATCGAACAGCTTAATTATATAGATGAATTATAATTTTACTCTTATTCTATG
66 CAATTTGTAATAGGATCGAACAGCTTAATTATATAGATGAATTATAATTTTACTCTTATTCTATG
1336501 CAGAATAATTAAATTTACATTGACTAATGGAT
131 CAGAATAATTAAATTTACATTGACTAATGGAT
1336533 TATAGATAGATTTAACTTGGATAATTGGATTATATAGGTGTGGATTATAATTTATCTTGACTATC
1 TATAGATAGATTTAACTTGGATAATTGGATTATATAGGTGTGGATTATAATTTATCTTGACTATC
1336598 CAATTTGTAATAGGATCGAACAGCTTAATTATATAGATGAATTATAATTTTACTCTTATTCTATG
66 CAATTTGTAATAGGATCGAACAGCTTAATTATATAGATGAATTATAATTTTACTCTTATTCTATG
1336663 CAGAATAATTAAATTTACATTGACTAAT
131 CAGAATAATTAAATTTACATTGACTAAT
1336691 CAAAGCAGCC
Statistics
Matches: 158, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
162 158 1.00
ACGTcount: A:0.36, C:0.09, G:0.14, T:0.41
Consensus pattern (162 bp):
TATAGATAGATTTAACTTGGATAATTGGATTATATAGGTGTGGATTATAATTTATCTTGACTATC
CAATTTGTAATAGGATCGAACAGCTTAATTATATAGATGAATTATAATTTTACTCTTATTCTATG
CAGAATAATTAAATTTACATTGACTAATGGAT
Done.