Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000198.1 Hibiscus syriacus cultivar Beakdansim tig00000354_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58989

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1142--1255
59
1.9
60
85
5
160
17
24
33
24
1.96
1839--1879
21
2.0
20
85
4
55
46
0
0
53
1.00
5046--5649
133
4.5
135
86
5
821
22
19
21
36
1.95
5054--5649
268
2.2
268
88
4
864
22
19
20
36
1.95
5791--5914
62
2.0
61
93
1
212
41
0
22
36
1.54
5856--5905
23
2.2
23
82
7
57
48
0
20
32
1.50
5996--6026
14
2.2
14
100
0
62
25
0
16
58
1.38
6147--6219
34
2.1
34
92
0
119
35
5
6
52
1.52
6732--6783
21
2.5
21
87
0
77
21
25
34
19
1.96
6756--6839
42
2.0
42
80
0
96
23
20
33
22
1.97
6776--6864
42
2.1
42
82
0
106
21
22
32
23
1.98
10470--10503
13
2.5
13
85
4
50
32
0
2
64
1.08
13462--13498
14
2.4
16
91
8
60
8
43
2
45
1.47
17404--17462
30
2.0
30
82
0
73
37
10
20
32
1.86
27460--27498
21
1.9
20
89
5
60
66
20
0
12
1.24
30604--30646
23
1.9
21
81
13
50
34
13
18
32
1.90
34193--34231
20
2.0
20
89
0
60
33
23
10
33
1.88
48151--48189
20
2.0
20
84
0
51
35
23
7
33
1.83
56527--56570
22
2.0
22
90
0
70
47
15
13
22
1.81
57459--57519
22
2.8
22
89
0
86
26
24
19
29
1.99

Tables:   1

The End!