genome.fa.s1980.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001980.1 Hibiscus syriacus cultivar Beakdansim tig00004027_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  164856

Tables:   1   

This is table  1  of  1  ( 89 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11418--11460	2	21.5	2	100	0	86	51	0	0	48	1.00
11416--11500	12	7.0	12	79	12	57	58	1	2	37	1.18
16329--16389	21	3.0	20	76	23	56	65	1	1	31	1.12
23760--23810	24	2.1	24	85	7	68	45	0	0	54	0.99
23773--23815	20	2.1	21	87	8	63	46	0	0	53	1.00
24015--24041	3	9.0	3	100	0	54	33	0	0	66	0.92
24195--24240	2	23.0	2	100	0	92	50	0	0	50	1.00
29774--29856	36	2.3	35	93	2	139	54	10	14	20	1.70
31316--31620	149	2.0	149	96	0	565	36	19	15	29	1.92
33497--33541	21	2.1	21	87	0	63	31	28	24	15	1.96
34916--35074	31	5.1	31	84	7	196	28	18	20	32	1.96
35033--35129	30	3.2	30	88	1	113	22	20	24	31	1.98
35060--35132	30	2.4	30	95	0	128	24	20	24	30	1.99
36087--36190	45	2.3	44	83	6	129	27	16	17	38	1.91
37186--37270	26	3.7	23	66	30	58	50	1	1	47	1.16
37228--37296	25	2.8	25	75	18	72	49	0	0	50	1.00
37215--37287	13	5.4	14	75	16	64	49	0	1	49	1.09
46220--46287	23	3.0	23	84	0	91	29	23	25	22	1.99
46299--46511	103	2.1	103	94	0	372	36	22	14	27	1.92
48192--48236	21	2.1	21	87	0	63	15	24	28	31	1.96
50609--50699	20	4.6	20	86	2	103	40	27	12	19	1.87
51253--51292	20	2.0	20	90	0	62	55	20	15	10	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51254--51301	20	2.4	20	85	0	60	54	20	14	10	1.70
51297--51351	20	2.8	19	86	8	74	14	16	20	49	1.80
53989--54038	25	2.0	25	96	0	91	44	22	8	26	1.80
54531--54593	27	2.4	28	79	15	80	44	0	0	55	0.99
54517--54580	34	1.9	33	90	3	101	39	0	0	60	0.97
54525--54591	31	2.3	29	87	12	93	41	0	0	58	0.98
54546--54593	10	5.0	10	82	12	57	45	0	0	54	0.99
54524--54580	3	19.0	3	79	13	64	38	0	0	61	0.96
56718--56785	18	3.5	18	73	21	57	27	5	4	61	1.38
61450--61494	20	2.2	21	84	4	56	77	2	15	4	1.02
61450--61487	10	3.7	10	92	3	58	81	2	10	5	0.94
63710--63935	114	2.0	114	92	0	380	32	15	21	30	1.94
66215--66269	22	2.5	22	90	0	92	36	10	12	40	1.79
66641--67150	186	2.7	186	95	1	923	32	14	15	38	1.87
67091--67505	76	5.5	76	97	0	758	22	20	21	34	1.96
67639--67704	22	2.9	23	71	24	52	43	0	0	56	0.99
67635--67704	31	2.3	29	85	14	88	42	0	0	57	0.99
67634--67686	3	17.3	3	81	11	63	37	0	0	62	0.96
71897--71950	24	2.2	24	90	0	81	40	18	18	22	1.91
72889--72979	19	4.6	20	83	5	105	30	9	23	36	1.87
72888--72979	39	2.3	41	81	7	109	30	9	22	36	1.87
76425--76525	31	3.3	31	81	5	116	34	16	16	31	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
78613--78645	2	16.5	2	100	0	66	51	0	0	48	1.00
79432--79478	22	2.1	22	88	0	67	40	8	27	23	1.83
79873--79954	26	3.2	26	67	16	80	41	2	6	50	1.40
79847--79953	51	2.1	51	87	0	151	41	1	3	53	1.30
85027--85081	29	1.9	28	88	3	83	30	23	12	32	1.92
85329--85378	10	5.0	10	83	9	66	34	26	0	40	1.56
85513--85811	111	2.7	111	98	0	571	36	7	10	45	1.68
86049--86113	3	21.7	3	82	6	78	33	26	33	6	1.81
86214--86282	23	3.1	23	76	10	63	23	1	2	72	1.06
86333--86417	35	2.5	33	78	14	91	25	8	10	55	1.62
91835--91879	21	2.1	21	87	0	63	31	28	24	15	1.96
92459--92493	18	1.9	18	88	11	54	54	5	17	22	1.64
92550--92593	22	2.0	22	86	4	63	45	0	22	31	1.53
93479--93782	149	2.0	149	96	0	554	27	17	20	34	1.95
93761--93805	23	2.0	23	82	8	56	20	22	28	28	1.98
96921--96965	21	2.1	21	87	0	63	31	28	24	15	1.96
97545--97579	18	1.9	18	88	11	54	54	5	17	22	1.64
97636--97679	22	2.0	22	86	4	63	45	0	22	31	1.53
98569--98870	149	2.0	149	96	0	550	28	17	19	34	1.95
101607--101677	37	1.9	37	88	0	106	33	11	28	26	1.91
102392--102431	20	2.0	20	85	9	55	2	35	0	62	1.09
102402--102447	21	2.1	22	84	8	58	4	34	0	60	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
103692--104051	183	2.0	182	96	0	666	45	8	13	32	1.74
104539--104572	15	2.3	15	89	0	50	5	20	0	73	1.04
104884--104910	9	3.0	9	100	0	54	22	11	0	66	1.22
104930--105021	46	2.0	46	89	0	139	22	19	11	45	1.83
105060--105115	28	2.0	28	92	0	94	37	10	5	46	1.62
107891--108217	163	2.0	163	98	0	636	30	14	23	32	1.94
112164--112192	14	2.0	15	93	6	51	51	6	6	34	1.55
120369--120414	11	4.4	11	83	5	60	54	2	0	43	1.12
120391--120429	8	4.8	8	90	3	60	56	0	2	41	1.13
121104--121294	99	1.9	96	84	7	249	21	18	24	35	1.96
132953--132977	13	1.9	13	100	0	50	72	4	0	24	1.02
134426--134460	15	2.4	14	85	4	52	54	2	0	42	1.15
134418--134459	8	5.9	7	84	13	50	54	4	0	40	1.21
134822--134908	30	2.9	29	81	10	104	32	8	26	33	1.85
137451--137495	23	2.0	23	90	0	72	46	17	13	22	1.83
137730--137810	30	2.7	30	78	0	108	34	17	24	23	1.96
141079--141112	14	2.5	14	95	4	61	38	14	2	44	1.61
141079--141130	14	3.8	14	79	5	52	40	17	1	40	1.60
148395--148452	26	2.2	26	82	11	66	55	1	0	43	1.10
153476--153553	34	2.5	33	80	13	94	16	26	6	50	1.69
153485--153553	34	2.1	34	89	8	106	15	24	5	53	1.64
159304--159333	15	2.0	15	93	0	51	26	20	50	3	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
163986--164030	21	2.1	21	83	0	54	15	22	28	33	1.95

Tables:   1

The End!