Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01001981.1 Hibiscus syriacus cultivar Beakdansim tig00004035_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1059896
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 5 of 5
Found at i:1002957 original size:37 final size:37
Alignment explanation
Indices: 1002907--1003019 Score: 208
Period size: 37 Copynumber: 3.1 Consensus size: 37
1002897 AATACTTCTG
* *
1002907 TATCATATTTTTAGGAGTTTGAATCATAGTAGAACTC
1 TATCATATTTTTAGGAGTTTGAATCCTAGTAAAACTC
1002944 TATCATATTTTTAGGAGTTTGAATCCTAGTAAAACTC
1 TATCATATTTTTAGGAGTTTGAATCCTAGTAAAACTC
1002981 TATCATATTTTTAGGAGTTTGAATCCTAGTAAAACTC
1 TATCATATTTTTAGGAGTTTGAATCCTAGTAAAACTC
1003018 TA
1 TA
1003020 ACGCTATGTT
Statistics
Matches: 74, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 74 1.00
ACGTcount: A:0.33, C:0.12, G:0.14, T:0.41
Consensus pattern (37 bp):
TATCATATTTTTAGGAGTTTGAATCCTAGTAAAACTC
Found at i:1003103 original size:2 final size:2
Alignment explanation
Indices: 1003098--1003124 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
1003088 TGTGTTGGAC
1003098 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1003125 AGAACACTCT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:1003324 original size:17 final size:18
Alignment explanation
Indices: 1003294--1003347 Score: 58
Period size: 17 Copynumber: 3.0 Consensus size: 18
1003284 AAATTAAAAG
1003294 TATG-TAAAAGATAAAATT
1 TATGATAAAA-ATAAAATT
*
1003312 TAT-ATAAAAATAAAATC
1 TATGATAAAAATAAAATT
*
1003329 TATGATCAAAACTAAAATT
1 TATGAT-AAAAATAAAATT
1003348 AAAGTATAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
17 10 0.33
18 10 0.33
19 10 0.33
ACGTcount: A:0.57, C:0.06, G:0.06, T:0.31
Consensus pattern (18 bp):
TATGATAAAAATAAAATT
Found at i:1009054 original size:22 final size:20
Alignment explanation
Indices: 1009015--1009054 Score: 53
Period size: 22 Copynumber: 1.9 Consensus size: 20
1009005 GTTGTTGTGC
1009015 ACAAGTTTTATGATGAAACA
1 ACAAGTTTTATGATGAAACA
*
1009035 ACAACGTTTTGATTATGAAA
1 ACAA-GTTTT-ATGATGAAA
1009055 TTGAAGTAGG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 4 0.24
21 5 0.29
22 8 0.47
ACGTcount: A:0.42, C:0.10, G:0.15, T:0.33
Consensus pattern (20 bp):
ACAAGTTTTATGATGAAACA
Found at i:1015686 original size:20 final size:20
Alignment explanation
Indices: 1015661--1015700 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
1015651 TTTTGGTGCA
*
1015661 GAGGGAATCGATCCCCCCTT
1 GAGGGAACCGATCCCCCCTT
*
1015681 GAGGGAACCGATTCCCCCTT
1 GAGGGAACCGATCCCCCCTT
1015701 TGAAGGGGAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.20, C:0.35, G:0.25, T:0.20
Consensus pattern (20 bp):
GAGGGAACCGATCCCCCCTT
Found at i:1015707 original size:22 final size:20
Alignment explanation
Indices: 1015661--1015721 Score: 70
Period size: 22 Copynumber: 2.9 Consensus size: 20
1015651 TTTTGGTGCA
1015661 GAGGGAATCGA-TCCCCCCTT
1 GAGGGAA-CGATTCCCCCCTT
*
1015681 GAGGGAACCGATTCCCCCTTT
1 GAGGGAA-CGATTCCCCCCTT
1015702 GAAGGGGAACGATTCCCCCC
1 G-A-GGGAACGATTCCCCCC
1015722 ACAGGGGAAT
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
20 10 0.29
21 9 0.26
22 11 0.31
23 5 0.14
ACGTcount: A:0.21, C:0.34, G:0.26, T:0.18
Consensus pattern (20 bp):
GAGGGAACGATTCCCCCCTT
Found at i:1015729 original size:20 final size:21
Alignment explanation
Indices: 1015704--1015742 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
1015694 CCCCCTTTGA
*
1015704 AGGGGAA-CGATTCCCCCCAC
1 AGGGGAATCGATACCCCCCAC
1015724 AGGGGAATCGATACCCCCC
1 AGGGGAATCGATACCCCCC
1015743 TGGGGTTCTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.26, C:0.38, G:0.26, T:0.10
Consensus pattern (21 bp):
AGGGGAATCGATACCCCCCAC
Found at i:1018525 original size:20 final size:20
Alignment explanation
Indices: 1018500--1018542 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
1018490 TTTACACTTA
1018500 GGGAACTGATTCCCCATAGG
1 GGGAACTGATTCCCCATAGG
1018520 GGGAACTGATTCCCCATAGG
1 GGGAACTGATTCCCCATAGG
1018540 GGG
1 GGG
1018543 TACCAATTCC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.23, C:0.23, G:0.35, T:0.19
Consensus pattern (20 bp):
GGGAACTGATTCCCCATAGG
Found at i:1018555 original size:21 final size:20
Alignment explanation
Indices: 1018508--1018554 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
1018498 TAGGGAACTG
**
1018508 ATTCCCCATAGGGGGAACTG
1 ATTCCCCATAGGGGGAACCA
*
1018528 ATTCCCCATAGGGGGTACCA
1 ATTCCCCATAGGGGGAACCA
1018548 ATTCCCC
1 ATTCCCC
1018555 CCATGCTCCA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.23, C:0.32, G:0.23, T:0.21
Consensus pattern (20 bp):
ATTCCCCATAGGGGGAACCA
Found at i:1024144 original size:21 final size:21
Alignment explanation
Indices: 1024093--1024145 Score: 72
Period size: 21 Copynumber: 2.5 Consensus size: 21
1024083 ATTATGACTA
1024093 TCGCAATGCGATTTTCCAATT
1 TCGCAATGCGATTTTCCAATT
**
1024114 TCGCGTTGCGATTTTCCCAA-T
1 TCGCAATGCGATTTT-CCAATT
1024135 TCGCAATGCGA
1 TCGCAATGCGA
1024146 ATAAGTAAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
21 23 0.85
22 4 0.15
ACGTcount: A:0.21, C:0.26, G:0.19, T:0.34
Consensus pattern (21 bp):
TCGCAATGCGATTTTCCAATT
Found at i:1024162 original size:20 final size:20
Alignment explanation
Indices: 1024132--1024187 Score: 94
Period size: 20 Copynumber: 2.8 Consensus size: 20
1024122 CGATTTTCCC
1024132 AATTCGCAATGCGAATAAGTA
1 AATT-GCAATGCGAATAAGTA
1024153 AATTGCAATGCGAATAAGTA
1 AATTGCAATGCGAATAAGTA
*
1024173 AATCGCAATGCGAAT
1 AATTGCAATGCGAAT
1024188 TTGGAAAATC
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
20 30 0.88
21 4 0.12
ACGTcount: A:0.43, C:0.14, G:0.20, T:0.23
Consensus pattern (20 bp):
AATTGCAATGCGAATAAGTA
Found at i:1024268 original size:20 final size:20
Alignment explanation
Indices: 1024240--1024302 Score: 90
Period size: 20 Copynumber: 3.1 Consensus size: 20
1024230 TACAAAGTCT
*
1024240 CAACGCGATACTGACTTTCG
1 CAACTCGATACTGACTTTCG
* *
1024260 CAACTCGATACTTAATTTCG
1 CAACTCGATACTGACTTTCG
*
1024280 CAACTCAATACTGACTTTCG
1 CAACTCGATACTGACTTTCG
1024300 CAA
1 CAA
1024303 TGAGATAATA
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 37 1.00
ACGTcount: A:0.30, C:0.29, G:0.13, T:0.29
Consensus pattern (20 bp):
CAACTCGATACTGACTTTCG
Found at i:1024524 original size:22 final size:22
Alignment explanation
Indices: 1024496--1024539 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
1024486 CACTCTCTCA
1024496 CCCATCTCCGACGAAATCCGTC
1 CCCATCTCCGACGAAATCCGTC
*
1024518 CCCATCTCCGGCGAAATCCGTC
1 CCCATCTCCGACGAAATCCGTC
1024540 TATCTCCATC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.20, C:0.45, G:0.16, T:0.18
Consensus pattern (22 bp):
CCCATCTCCGACGAAATCCGTC
Found at i:1024837 original size:20 final size:20
Alignment explanation
Indices: 1024788--1024846 Score: 73
Period size: 20 Copynumber: 3.0 Consensus size: 20
1024778 TTTATTCTCT
* **
1024788 CGTTGCGATAGTCAAATTCG
1 CGTTGCGATTGTCATTTTCG
1024808 CGTTGCGATTGTCATTTTCG
1 CGTTGCGATTGTCATTTTCG
* *
1024828 TGTTGCGATTTTCATTTTC
1 CGTTGCGATTGTCATTTTC
1024847 AGAAACTATT
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.15, C:0.19, G:0.22, T:0.44
Consensus pattern (20 bp):
CGTTGCGATTGTCATTTTCG
Found at i:1025037 original size:25 final size:24
Alignment explanation
Indices: 1024983--1025037 Score: 58
Period size: 25 Copynumber: 2.2 Consensus size: 24
1024973 TGTTTATTAT
* *
1024983 TGTTTTTGGTATATCTTCACAGTG
1 TGTTTTTGGTATATCTTAACAGTA
1025007 TAGTTTTTGGTATATC-TAACTTAGTA
1 T-GTTTTTGGTATATCTTAAC--AGTA
1025033 TGTTT
1 TGTTT
1025038 ATTGTTTTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
24 4 0.15
25 18 0.69
26 4 0.15
ACGTcount: A:0.20, C:0.09, G:0.18, T:0.53
Consensus pattern (24 bp):
TGTTTTTGGTATATCTTAACAGTA
Found at i:1026186 original size:18 final size:18
Alignment explanation
Indices: 1026165--1026212 Score: 87
Period size: 18 Copynumber: 2.7 Consensus size: 18
1026155 TCCACTTCGG
1026165 GAGCCATCACCTCACCCA
1 GAGCCATCACCTCACCCA
*
1026183 GAGCTATCACCTCACCCA
1 GAGCCATCACCTCACCCA
1026201 GAGCCATCACCT
1 GAGCCATCACCT
1026213 GATCAACCCG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.27, C:0.46, G:0.12, T:0.15
Consensus pattern (18 bp):
GAGCCATCACCTCACCCA
Found at i:1026808 original size:19 final size:19
Alignment explanation
Indices: 1026786--1026868 Score: 104
Period size: 19 Copynumber: 4.6 Consensus size: 19
1026776 GGAAATGGCT
1026786 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
*
1026805 ATCGCAA--CG--A-CAAA
1 ATCGCAATGCGAAATGAAA
1026819 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
*
1026838 ATCGCAACGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
*
1026857 ATCACAATGCGA
1 ATCGCAATGCGA
1026869 TTTGTGTTTC
Statistics
Matches: 54, Mismatches: 5, Indels: 10
0.78 0.07 0.14
Matches are distributed among these distances:
14 10 0.19
15 1 0.02
16 2 0.04
17 2 0.04
18 1 0.02
19 38 0.70
ACGTcount: A:0.47, C:0.20, G:0.19, T:0.13
Consensus pattern (19 bp):
ATCGCAATGCGAAATGAAA
Found at i:1026899 original size:14 final size:14
Alignment explanation
Indices: 1026880--1026971 Score: 76
Period size: 14 Copynumber: 5.9 Consensus size: 14
1026870 TTGTGTTTCG
1026880 CGTTGCGATTTTGT
1 CGTTGCGATTTTGT
*
1026894 CGTTGCGATTTTCATTT
1 CGTTGCGA-TTT--TGT
1026911 CGCATTGCGATTTTGT
1 CG--TTGCGATTTTGT
*
1026927 CGTTGCGATTTTCATTT
1 CGTTGCGA-TTT--TGT
1026944 CGCATTGCGATTTTGT
1 CG--TTGCGATTTTGT
1026960 CGTTGCGATTTT
1 CGTTGCGATTTT
1026972 CATTTCGCAT
Statistics
Matches: 64, Mismatches: 4, Indels: 20
0.73 0.05 0.23
Matches are distributed among these distances:
14 24 0.38
15 6 0.09
16 8 0.12
17 8 0.12
18 6 0.09
19 12 0.19
ACGTcount: A:0.11, C:0.17, G:0.23, T:0.49
Consensus pattern (14 bp):
CGTTGCGATTTTGT
Found at i:1026912 original size:33 final size:33
Alignment explanation
Indices: 1026875--1026987 Score: 217
Period size: 33 Copynumber: 3.4 Consensus size: 33
1026865 GCGATTTGTG
*
1026875 TTTCGCGTTGCGATTTTGTCGTTGCGATTTTCA
1 TTTCGCATTGCGATTTTGTCGTTGCGATTTTCA
1026908 TTTCGCATTGCGATTTTGTCGTTGCGATTTTCA
1 TTTCGCATTGCGATTTTGTCGTTGCGATTTTCA
1026941 TTTCGCATTGCGATTTTGTCGTTGCGATTTTCA
1 TTTCGCATTGCGATTTTGTCGTTGCGATTTTCA
1026974 TTTCGCATTGCGAT
1 TTTCGCATTGCGAT
1026988 AGCCATTTTC
Statistics
Matches: 79, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
33 79 1.00
ACGTcount: A:0.12, C:0.19, G:0.22, T:0.48
Consensus pattern (33 bp):
TTTCGCATTGCGATTTTGTCGTTGCGATTTTCA
Found at i:1026999 original size:20 final size:20
Alignment explanation
Indices: 1026960--1027066 Score: 126
Period size: 20 Copynumber: 5.4 Consensus size: 20
1026950 GCGATTTTGT
**
1026960 CGTTGCGATTTTCA-TTTCG
1 CGTTGCGATAGTCATTTTCG
* *
1026979 CATTGCGATAGCCATTTTCG
1 CGTTGCGATAGTCATTTTCG
*
1026999 CGTTGCGATAGTCATTTCCG
1 CGTTGCGATAGTCATTTTCG
1027019 CGTTGCGATAGTCATTTTCG
1 CGTTGCGATAGTCATTTTCG
* * *
1027039 CGTTGCGAAAGTAAGTTTCG
1 CGTTGCGATAGTCATTTTCG
*
1027059 TGTTGCGA
1 CGTTGCGA
1027067 AAGTAAACTA
Statistics
Matches: 75, Mismatches: 12, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
19 10 0.13
20 65 0.87
ACGTcount: A:0.17, C:0.21, G:0.25, T:0.37
Consensus pattern (20 bp):
CGTTGCGATAGTCATTTTCG
Found at i:1028880 original size:14 final size:14
Alignment explanation
Indices: 1028846--1028884 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
1028836 TTGATTGTTT
1028846 AATTGATTTGTAAA
1 AATTGATTTGTAAA
*
1028860 AAATGATTTGTAAA
1 AATTGATTTGTAAA
**
1028874 TGTTGATTTGT
1 AATTGATTTGT
1028885 TTAATTGGTG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.36, C:0.00, G:0.18, T:0.46
Consensus pattern (14 bp):
AATTGATTTGTAAA
Found at i:1029030 original size:14 final size:14
Alignment explanation
Indices: 1029011--1029064 Score: 63
Period size: 14 Copynumber: 3.5 Consensus size: 14
1029001 GAAACTGACT
1029011 ATCGCAACGAGAAA
1 ATCGCAACGAGAAA
1029025 ATCGCAATGCGAAATGAAA
1 ATCGCAA--CG--A-GAAA
1029044 ATCGCAACGAGAAA
1 ATCGCAACGAGAAA
1029058 ATCGCAA
1 ATCGCAA
1029065 TGCGATTTTC
Statistics
Matches: 35, Mismatches: 0, Indels: 10
0.78 0.00 0.22
Matches are distributed among these distances:
14 18 0.51
15 1 0.03
16 2 0.06
17 2 0.06
18 1 0.03
19 11 0.31
ACGTcount: A:0.48, C:0.20, G:0.20, T:0.11
Consensus pattern (14 bp):
ATCGCAACGAGAAA
Found at i:1029176 original size:20 final size:20
Alignment explanation
Indices: 1029096--1029183 Score: 97
Period size: 20 Copynumber: 4.4 Consensus size: 20
1029086 CGATTTTCTA
*
1029096 GTTGCGATAGCCATTTTCAC
1 GTTGCGATAGCCATTTTCGC
***
1029116 GTTGCGATTTTTCA-TTTCGC
1 GTTGCGA-TAGCCATTTTCGC
* *
1029136 ATTGCGATAGCAATTTTCGC
1 GTTGCGATAGCCATTTTCGC
*
1029156 GTTGCGATAGCCATTTCCGC
1 GTTGCGATAGCCATTTTCGC
1029176 GTTGCGAT
1 GTTGCGAT
1029184 TTCCCCGTTG
Statistics
Matches: 54, Mismatches: 12, Indels: 4
0.77 0.17 0.06
Matches are distributed among these distances:
19 2 0.04
20 49 0.91
21 3 0.06
ACGTcount: A:0.17, C:0.23, G:0.23, T:0.38
Consensus pattern (20 bp):
GTTGCGATAGCCATTTTCGC
Found at i:1029187 original size:14 final size:14
Alignment explanation
Indices: 1029168--1029197 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
1029158 TGCGATAGCC
*
1029168 ATTTCCGCGTTGCG
1 ATTTCCCCGTTGCG
1029182 ATTTCCCCGTTGCG
1 ATTTCCCCGTTGCG
1029196 AT
1 AT
1029198 AGTTAAATGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.10, C:0.30, G:0.23, T:0.37
Consensus pattern (14 bp):
ATTTCCCCGTTGCG
Found at i:1029519 original size:20 final size:21
Alignment explanation
Indices: 1029471--1029519 Score: 55
Period size: 20 Copynumber: 2.4 Consensus size: 21
1029461 ATAGTCAGTA
*
1029471 TCGCATTGCGATTTTCCAAAT
1 TCGCATTGCGATTTTACAAAT
* **
1029492 TTGCATTGCGA-TTTACTTAT
1 TCGCATTGCGATTTTACAAAT
1029512 TCGCATTG
1 TCGCATTG
1029520 TGAATTATGA
Statistics
Matches: 23, Mismatches: 5, Indels: 1
0.79 0.17 0.03
Matches are distributed among these distances:
20 13 0.57
21 10 0.43
ACGTcount: A:0.20, C:0.20, G:0.16, T:0.43
Consensus pattern (21 bp):
TCGCATTGCGATTTTACAAAT
Found at i:1030334 original size:24 final size:24
Alignment explanation
Indices: 1030307--1030360 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 24
1030297 GTATTCGAAA
*
1030307 TTTGATCTTGGTCAATACCCGGAC
1 TTTGATATTGGTCAATACCCGGAC
* *
1030331 TTTGATATTGGTCAATACTCGGAT
1 TTTGATATTGGTCAATACCCGGAC
1030355 TTTGAT
1 TTTGAT
1030361 GATGTTTCAG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.22, C:0.17, G:0.20, T:0.41
Consensus pattern (24 bp):
TTTGATATTGGTCAATACCCGGAC
Found at i:1030552 original size:12 final size:12
Alignment explanation
Indices: 1030535--1030559 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
1030525 ATATAATCCT
1030535 GAAGAAGAAAAA
1 GAAGAAGAAAAA
1030547 GAAGAAGAAAAA
1 GAAGAAGAAAAA
1030559 G
1 G
1030560 TCCCCGAAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (12 bp):
GAAGAAGAAAAA
Found at i:1032907 original size:19 final size:19
Alignment explanation
Indices: 1032885--1032982 Score: 72
Period size: 19 Copynumber: 5.7 Consensus size: 19
1032875 GGAAATTACT
1032885 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
*
1032904 ATCGCAA--CG--A-GAGA
1 ATCGCAATGCGAAATGAAA
*
1032918 ATCGCAATGTGAAATGAAA
1 ATCGCAATGCGAAATGAAA
**
1032937 ATCGCAA--CG--A-GGGA
1 ATCGCAATGCGAAATGAAA
* *
1032951 ATCGCAAAGCGAAATAAAA
1 ATCGCAATGCGAAATGAAA
1032970 ATCGCAATGCGAA
1 ATCGCAATGCGAA
1032983 TTTAGTTTCG
Statistics
Matches: 59, Mismatches: 10, Indels: 20
0.66 0.11 0.22
Matches are distributed among these distances:
14 19 0.32
15 2 0.03
16 3 0.05
17 3 0.05
18 2 0.03
19 30 0.51
ACGTcount: A:0.46, C:0.17, G:0.23, T:0.13
Consensus pattern (19 bp):
ATCGCAATGCGAAATGAAA
Found at i:1032932 original size:33 final size:33
Alignment explanation
Indices: 1032885--1032976 Score: 148
Period size: 33 Copynumber: 2.8 Consensus size: 33
1032875 GGAAATTACT
1032885 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
1 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
* *
1032918 ATCGCAATGTGAAATGAAAATCGCAACGAGGGA
1 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
* *
1032951 ATCGCAAAGCGAAATAAAAATCGCAA
1 ATCGCAATGCGAAATGAAAATCGCAA
1032977 TGCGAATTTA
Statistics
Matches: 54, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 54 1.00
ACGTcount: A:0.47, C:0.17, G:0.23, T:0.13
Consensus pattern (33 bp):
ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
Found at i:1033020 original size:19 final size:19
Alignment explanation
Indices: 1032977--1033054 Score: 69
Period size: 19 Copynumber: 4.4 Consensus size: 19
1032967 AAAATCGCAA
* *
1032977 TGCGAATTTAGTTTCGTGT
1 TGCGATTTTAGTTTCGCGT
1032996 TGCGATTTTAGTTTCGCGT
1 TGCGATTTTAGTTTCGCGT
*
1033015 TTCGATTTT-G--T--CGT
1 TGCGATTTTAGTTTCGCGT
*
1033029 TGCGATTTTCA-TTTCGCAT
1 TGCGATTTT-AGTTTCGCGT
1033048 TGCGATT
1 TGCGATT
1033055 CTCTCGTTGC
Statistics
Matches: 48, Mismatches: 5, Indels: 12
0.74 0.08 0.18
Matches are distributed among these distances:
14 11 0.23
16 1 0.02
17 1 0.02
18 1 0.02
19 34 0.71
ACGTcount: A:0.13, C:0.15, G:0.23, T:0.49
Consensus pattern (19 bp):
TGCGATTTTAGTTTCGCGT
Found at i:1033036 original size:33 final size:33
Alignment explanation
Indices: 1032994--1033119 Score: 182
Period size: 33 Copynumber: 3.8 Consensus size: 33
1032984 TTAGTTTCGT
* * * *
1032994 GTTGCGATTTT-AGTTTCGCGTTTCGATTTTGTC
1 GTTGCGATTTTCA-TTTCGCATTGCGATTATATC
* *
1033027 GTTGCGATTTTCATTTCGCATTGCGATTCTCTC
1 GTTGCGATTTTCATTTCGCATTGCGATTATATC
1033060 GTTGCGATTTTCATTTCGCATTGCGATTATATC
1 GTTGCGATTTTCATTTCGCATTGCGATTATATC
1033093 GTTGCGATTTTCATTTCGCATTGCGAT
1 GTTGCGATTTTCATTTCGCATTGCGAT
1033120 AGTAATTTTT
Statistics
Matches: 86, Mismatches: 6, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
33 85 0.99
34 1 0.01
ACGTcount: A:0.13, C:0.19, G:0.21, T:0.47
Consensus pattern (33 bp):
GTTGCGATTTTCATTTCGCATTGCGATTATATC
Found at i:1033085 original size:19 final size:19
Alignment explanation
Indices: 1033028--1033119 Score: 96
Period size: 19 Copynumber: 5.4 Consensus size: 19
1033018 GATTTTGTCG
1033028 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
*
1033047 TTGCGA--TTC-TCTCG--
1 TTGCGATTTTCATTTCGCA
1033061 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
*
1033080 TTGCGA--TT-ATATCG--
1 TTGCGATTTTCATTTCGCA
1033094 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
1033113 TTGCGAT
1 TTGCGAT
1033120 AGTAATTTTT
Statistics
Matches: 59, Mismatches: 4, Indels: 20
0.71 0.05 0.24
Matches are distributed among these distances:
14 12 0.20
16 14 0.24
17 14 0.24
19 19 0.32
ACGTcount: A:0.15, C:0.21, G:0.18, T:0.46
Consensus pattern (19 bp):
TTGCGATTTTCATTTCGCA
Found at i:1033245 original size:14 final size:14
Alignment explanation
Indices: 1033226--1033262 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
1033216 CATCAATTAA
1033226 ACAAATCAACTTTT
1 ACAAATCAACTTTT
*
1033240 ACAAATCACCTTTT
1 ACAAATCAACTTTT
1033254 ACAAATCAA
1 ACAAATCAA
1033263 TTAAACAATC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.46, C:0.24, G:0.00, T:0.30
Consensus pattern (14 bp):
ACAAATCAACTTTT
Found at i:1034675 original size:21 final size:21
Alignment explanation
Indices: 1034609--1034675 Score: 55
Period size: 21 Copynumber: 3.2 Consensus size: 21
1034599 GTGAATCGGG
1034609 CTCTTGAATGGTGGGA-GGGA
1 CTCTTGAATGGTGGGAGGGGA
* * * ** * *
1034629 CCTCTTCAACGATGACAGTGGC
1 -CTCTTGAATGGTGGGAGGGGA
1034651 CTCTTGAATGGTGGGAGGGGA
1 CTCTTGAATGGTGGGAGGGGA
1034672 CTCT
1 CTCT
1034676 CGAGGAATGA
Statistics
Matches: 31, Mismatches: 14, Indels: 2
0.66 0.30 0.04
Matches are distributed among these distances:
21 29 0.94
22 2 0.06
ACGTcount: A:0.19, C:0.19, G:0.36, T:0.25
Consensus pattern (21 bp):
CTCTTGAATGGTGGGAGGGGA
Found at i:1035119 original size:78 final size:79
Alignment explanation
Indices: 1034968--1035120 Score: 236
Period size: 78 Copynumber: 1.9 Consensus size: 79
1034958 AAGACAAAAC
* *
1034968 AAAGACAAATACTAACTTCACAGTGTTAAAGAATACACAGTTTAGCAGAATTGGCAGCAACCGAA
1 AAAGACAAATACTAACTTCACAGTGTT--A-AATAAACAGTTTAGCAGAATTAGCAGCAACCGAA
1035033 TAAATTTACTTCAACCA
63 TAAATTTACTTCAACCA
* *
1035050 AAAGACAAATACTAACTTCACAGTGTT-AATAAACAGTTTATCAGTATTAGCAGCAACCGAATAA
1 AAAGACAAATACTAACTTCACAGTGTTAAATAAACAGTTTAGCAGAATTAGCAGCAACCGAATAA
1035114 ATTTACT
66 ATTTACT
1035121 AAGCAATCTA
Statistics
Matches: 67, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
78 40 0.60
82 27 0.40
ACGTcount: A:0.44, C:0.18, G:0.12, T:0.25
Consensus pattern (79 bp):
AAAGACAAATACTAACTTCACAGTGTTAAATAAACAGTTTAGCAGAATTAGCAGCAACCGAATAA
ATTTACTTCAACCA
Found at i:1036887 original size:33 final size:33
Alignment explanation
Indices: 1036805--1036988 Score: 251
Period size: 33 Copynumber: 5.4 Consensus size: 33
1036795 TCTTTTGGTT
1036805 GAAATGAAAATCGCAACGAGATAATGAAAATCGCAACGC
1 GAAATGAAAATCGCAACGAG---A-G--AATCGCAACGC
** *
1036844 GGAAATGACTATCGCAACGAGAAAATCGCAACGC
1 -GAAATGAAAATCGCAACGAGAGAATCGCAACGC
**
1036878 GAAATGACTATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
1036911 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
*
1036944 GAAATGAAAATCGCAACGAGAGAATCACAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
1036977 GAAATGAAAATC
1 GAAATGAAAATC
1036989 ACAATGCGAT
Statistics
Matches: 137, Mismatches: 7, Indels: 7
0.91 0.05 0.05
Matches are distributed among these distances:
33 107 0.78
34 11 0.08
37 1 0.01
40 18 0.13
ACGTcount: A:0.46, C:0.21, G:0.22, T:0.11
Consensus pattern (33 bp):
GAAATGAAAATCGCAACGAGAGAATCGCAACGC
Found at i:1036992 original size:19 final size:19
Alignment explanation
Indices: 1036805--1036988 Score: 129
Period size: 14 Copynumber: 10.6 Consensus size: 19
1036795 TCTTTTGGTT
*
1036805 GAAATGAAAATCGCAACGA
1 GAAATGAAAATCGCAACGC
1036824 GATAATGAAAATCGCAACGC
1 GA-AATGAAAATCGCAACGC
**
1036844 GGAAATGACTATCGCAA--C
1 -GAAATGAAAATCGCAACGC
1036862 G--A-GAAAATCGCAACGC
1 GAAATGAAAATCGCAACGC
**
1036878 GAAATGACTATCGCAA--C
1 GAAATGAAAATCGCAACGC
*
1036895 G--A-GAGAATCGCAACGC
1 GAAATGAAAATCGCAACGC
1036911 GAAATGAAAATCGCAA--C
1 GAAATGAAAATCGCAACGC
*
1036928 G--A-GAGAATCGCAACGC
1 GAAATGAAAATCGCAACGC
1036944 GAAATGAAAATCGCAA--C
1 GAAATGAAAATCGCAACGC
* *
1036961 G--A-GAGAATCACAACGC
1 GAAATGAAAATCGCAACGC
1036977 GAAATGAAAATC
1 GAAATGAAAATC
1036989 ACAATGCGAT
Statistics
Matches: 128, Mismatches: 15, Indels: 44
0.68 0.08 0.24
Matches are distributed among these distances:
14 37 0.29
15 4 0.03
16 8 0.06
17 7 0.05
18 5 0.04
19 37 0.29
20 28 0.22
21 2 0.02
ACGTcount: A:0.46, C:0.21, G:0.22, T:0.11
Consensus pattern (19 bp):
GAAATGAAAATCGCAACGC
Found at i:1037015 original size:19 final size:19
Alignment explanation
Indices: 1036993--1037077 Score: 74
Period size: 19 Copynumber: 4.7 Consensus size: 19
1036983 AAAATCACAA
**
1036993 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTCATTTCGCGT
1037012 TGCGATTTTCATTTCGCGT
1 TGCGATTTTCATTTCGCGT
*
1037031 TGCGATTCTC--TT---GT
1 TGCGATTTTCATTTCGCGT
*
1037045 TGCGATAGTT-ATTTCCGCGT
1 TGCGAT-TTTCATTT-CGCGT
1037065 TGCGATTTTCATT
1 TGCGATTTTCATT
1037078 CTCGAAACTA
Statistics
Matches: 52, Mismatches: 6, Indels: 15
0.71 0.08 0.21
Matches are distributed among these distances:
14 8 0.15
15 1 0.02
16 2 0.04
17 2 0.04
19 28 0.54
20 11 0.21
ACGTcount: A:0.11, C:0.19, G:0.24, T:0.47
Consensus pattern (19 bp):
TGCGATTTTCATTTCGCGT
Found at i:1037656 original size:21 final size:21
Alignment explanation
Indices: 1037610--1037704 Score: 122
Period size: 21 Copynumber: 4.6 Consensus size: 21
1037600 CGATAGTAAG
* *
1037610 ATTCACATTGCGATTTACGT-
1 ATTCGCATTGCGATTTACTTA
* *
1037630 ATTCGCATTGCGATTTTCCTA
1 ATTCGCATTGCGATTTACTTA
1037651 ATTCGCATTGCGATTTACTTA
1 ATTCGCATTGCGATTTACTTA
*
1037672 ATTCGCGTTGCGATTTACTTA
1 ATTCGCATTGCGATTTACTTA
*
1037693 A-TCGCGTTGCGA
1 ATTCGCATTGCGA
1037705 ATTATGAAAA
Statistics
Matches: 68, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
20 28 0.41
21 40 0.59
ACGTcount: A:0.21, C:0.21, G:0.18, T:0.40
Consensus pattern (21 bp):
ATTCGCATTGCGATTTACTTA
Found at i:1037667 original size:41 final size:42
Alignment explanation
Indices: 1037610--1037704 Score: 122
Period size: 41 Copynumber: 2.3 Consensus size: 42
1037600 CGATAGTAAG
* *
1037610 ATTCACATTGCGATTTACGT-ATTCGCATTGCGATTTTCCTA
1 ATTCGCATTGCGATTTACGTAATTCGCATTGCGATTTACCTA
* * *
1037651 ATTCGCATTGCGATTTACTTAATTCGCGTTGCGATTTACTTA
1 ATTCGCATTGCGATTTACGTAATTCGCATTGCGATTTACCTA
*
1037693 A-TCGCGTTGCGA
1 ATTCGCATTGCGA
1037705 ATTATGAAAA
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
41 28 0.60
42 19 0.40
ACGTcount: A:0.21, C:0.21, G:0.18, T:0.40
Consensus pattern (42 bp):
ATTCGCATTGCGATTTACGTAATTCGCATTGCGATTTACCTA
Found at i:1037725 original size:21 final size:21
Alignment explanation
Indices: 1037701--1037756 Score: 69
Period size: 20 Copynumber: 2.7 Consensus size: 21
1037691 TAATCGCGTT
*
1037701 GCGAATTATGAAAATCGCAAC
1 GCGAATTACGAAAATCGCAAC
* *
1037722 GCGAA-TACGTAAATCGCAAT
1 GCGAATTACGAAAATCGCAAC
*
1037742 GCGAATTAGGAAAAT
1 GCGAATTACGAAAAT
1037757 TGCATTGCGA
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
20 17 0.59
21 12 0.41
ACGTcount: A:0.43, C:0.16, G:0.21, T:0.20
Consensus pattern (21 bp):
GCGAATTACGAAAATCGCAAC
Found at i:1037765 original size:21 final size:21
Alignment explanation
Indices: 1037700--1037766 Score: 73
Period size: 21 Copynumber: 3.2 Consensus size: 21
1037690 TTAATCGCGT
*
1037700 TGCGAATTATGAAAATCGCAA
1 TGCGAATTACGAAAATCGCAA
* *
1037721 CGCGAA-TACGTAAATCGCAA
1 TGCGAATTACGAAAATCGCAA
* * *
1037741 TGCGAATTAGGAAAATTGCAT
1 TGCGAATTACGAAAATCGCAA
1037762 TGCGA
1 TGCGA
1037767 TAGTCAGTAT
Statistics
Matches: 37, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
20 17 0.46
21 20 0.54
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.22
Consensus pattern (21 bp):
TGCGAATTACGAAAATCGCAA
Found at i:1037824 original size:20 final size:21
Alignment explanation
Indices: 1037776--1037827 Score: 61
Period size: 20 Copynumber: 2.5 Consensus size: 21
1037766 ATAGTCAGTA
*
1037776 TCGCATTGCGATTTTCCAAAT
1 TCGCATTGCGATTTTACAAAT
* **
1037797 TTGCATTGCGA-TTTACTTAT
1 TCGCATTGCGATTTTACAAAT
1037817 TCGCATTGCGA
1 TCGCATTGCGA
1037828 ATTGGGAAAA
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
20 16 0.62
21 10 0.38
ACGTcount: A:0.21, C:0.21, G:0.17, T:0.40
Consensus pattern (21 bp):
TCGCATTGCGATTTTACAAAT
Found at i:1037869 original size:21 final size:22
Alignment explanation
Indices: 1037817--1037869 Score: 74
Period size: 21 Copynumber: 2.5 Consensus size: 22
1037807 ATTTACTTAT
1037817 TCGCATTGCG-AATTGGGAAAA
1 TCGCATTGCGAAATTGGGAAAA
**
1037838 TCGCAACGCGAAATT-GGAAAA
1 TCGCATTGCGAAATTGGGAAAA
1037859 TCGCATTGCGA
1 TCGCATTGCGA
1037870 TTGTCATAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
21 23 0.85
22 4 0.15
ACGTcount: A:0.34, C:0.19, G:0.26, T:0.21
Consensus pattern (22 bp):
TCGCATTGCGAAATTGGGAAAA
Found at i:1038107 original size:22 final size:20
Alignment explanation
Indices: 1038074--1038115 Score: 66
Period size: 22 Copynumber: 2.0 Consensus size: 20
1038064 AAGTTTGAAT
1038074 TTTTATGAGTTTTATACATG
1 TTTTATGAGTTTTATACATG
1038094 TTTTACTGAAGTTTTATACATG
1 TTTTA-TG-AGTTTTATACATG
1038116 GTACTGTTCA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 5 0.25
21 2 0.10
22 13 0.65
ACGTcount: A:0.26, C:0.07, G:0.14, T:0.52
Consensus pattern (20 bp):
TTTTATGAGTTTTATACATG
Found at i:1040908 original size:7 final size:7
Alignment explanation
Indices: 1040896--1040927 Score: 55
Period size: 7 Copynumber: 4.6 Consensus size: 7
1040886 GATAATTACG
1040896 TGGGTTT
1 TGGGTTT
1040903 TGGGTTT
1 TGGGTTT
*
1040910 TGAGTTT
1 TGGGTTT
1040917 TGGGTTT
1 TGGGTTT
1040924 TGGG
1 TGGG
1040928 GGGAAAAGGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.03, C:0.00, G:0.44, T:0.53
Consensus pattern (7 bp):
TGGGTTT
Found at i:1054714 original size:44 final size:45
Alignment explanation
Indices: 1054601--1054920 Score: 450
Period size: 43 Copynumber: 7.4 Consensus size: 45
1054591 GAATACCATG
1054601 AGTGGCACCTTTTATGCCGATAATGCACCGTT-TGCATTTTCATT
1 AGTGGCACCTTTTATGCCGATAATGCACCGTTATGCATTTTCATT
* *
1054645 AG-GGGACCGTTTATGCCGATAATGCA-CGTTATGCATTTTCATT
1 AGTGGCACCTTTTATGCCGATAATGCACCGTTATGCATTTTCATT
* *
1054688 AGTGACACCTTTTATGCCGATAATGCACCGTTATACATTTTCATT
1 AGTGGCACCTTTTATGCCGATAATGCACCGTTATGCATTTTCATT
1054733 AGTGGCACC-TTTATGCCGAT-ATGCA--GTTATGCATTTTCATT
1 AGTGGCACCTTTTATGCCGATAATGCACCGTTATGCATTTTCATT
**
1054774 AGT-TTACCTTTTATG-CGATAATGCACCGTTATGCATTTTCATT
1 AGTGGCACCTTTTATGCCGATAATGCACCGTTATGCATTTTCATT
* * * *
1054817 A-TGACA-CATTTATGTCGA-AATGCATCGTTATGCATTTTCATT
1 AGTGGCACCTTTTATGCCGATAATGCACCGTTATGCATTTTCATT
1054859 AGTGGCACC-TTTATGCCGATAATGCACCGTTATGCATTTTCATT
1 AGTGGCACCTTTTATGCCGATAATGCACCGTTATGCATTTTCATT
*
1054903 AGTGACACCTTTTATGCC
1 AGTGGCACCTTTTATGCC
1054921 AATTAATAGA
Statistics
Matches: 245, Mismatches: 18, Indels: 25
0.85 0.06 0.09
Matches are distributed among these distances:
40 7 0.03
41 29 0.12
42 36 0.15
43 75 0.31
44 66 0.27
45 32 0.13
ACGTcount: A:0.24, C:0.21, G:0.17, T:0.38
Consensus pattern (45 bp):
AGTGGCACCTTTTATGCCGATAATGCACCGTTATGCATTTTCATT
Found at i:1054919 original size:171 final size:171
Alignment explanation
Indices: 1054607--1054920 Score: 501
Period size: 171 Copynumber: 1.8 Consensus size: 171
1054597 CATGAGTGGC
*
1054607 ACCTTTTATGCCGATAATGCACCGTTTGCATTTTCATTAGGGGACCGTTTATGCCGATAATGCAC
1 ACCTTTTATGCCGATAATGCACCGTTTGCATTTTCATTA-GGGACCATTTATGCCGATAATGCAC
1054672 GTTATGCATTTTCATTAGTGACACCTTTTATGCCGATAATGCACCGTTATACATTTTCATTAGTG
65 GTTATGCATTTTCATTAGTGACACCTTTTATGCCGATAATGCACCGTTATACATTTTCATTAGTG
*
1054737 GCACCTTTATGCCGATATGCAGTTATGCATTTTCATTAGTTT
130 ACACCTTTATGCCGATATGCAGTTATGCATTTTCATTAGTTT
* *
1054779 ACCTTTTATG-CGATAATGCACCGTTATGCATTTTCATTA-TGACACATTTATGTCGA-AATGCA
1 ACCTTTTATGCCGATAATGCACCGTT-TGCATTTTCATTAGGGAC-CATTTATGCCGATAATGCA
* *
1054841 TCGTTATGCATTTTCATTAGTGGCACC-TTTATGCCGATAATGCACCGTTATGCATTTTCATTAG
64 -CGTTATGCATTTTCATTAGTGACACCTTTTATGCCGATAATGCACCGTTATACATTTTCATTAG
1054905 TGACACCTTTTATGCC
128 TGACACC-TTTATGCC
1054921 AATTAATAGA
Statistics
Matches: 132, Mismatches: 6, Indels: 9
0.90 0.04 0.06
Matches are distributed among these distances:
170 51 0.39
171 58 0.44
172 23 0.17
ACGTcount: A:0.24, C:0.21, G:0.17, T:0.39
Consensus pattern (171 bp):
ACCTTTTATGCCGATAATGCACCGTTTGCATTTTCATTAGGGACCATTTATGCCGATAATGCACG
TTATGCATTTTCATTAGTGACACCTTTTATGCCGATAATGCACCGTTATACATTTTCATTAGTGA
CACCTTTATGCCGATATGCAGTTATGCATTTTCATTAGTTT
Done.