genome.fa.s1982.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001982.1 Hibiscus syriacus cultivar Beakdansim tig00004040_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  146253

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4886--4968	22	3.7	22	73	12	62	21	39	24	14	1.91
10606--10633	12	2.3	12	100	0	56	42	10	0	46	1.38
10664--10744	29	2.8	27	85	7	81	38	2	0	59	1.11
10664--10751	30	3.0	30	89	1	124	36	3	0	60	1.14
10811--10848	12	2.8	13	78	21	51	50	0	0	50	1.00
10886--10958	30	2.4	31	83	4	103	67	2	5	24	1.26
13067--13114	25	1.9	25	86	0	69	39	0	10	50	1.37
13129--13158	2	15.0	2	100	0	60	50	0	0	50	1.00
14541--14591	18	2.8	18	90	3	75	41	3	0	54	1.19
16158--16215	28	2.1	27	90	3	89	41	1	29	27	1.66
36523--36552	6	5.0	6	100	0	60	16	50	33	0	1.46
44134--44195	26	2.4	27	94	5	110	46	12	8	32	1.71
45585--45645	21	3.2	20	65	29	53	42	19	4	32	1.73
45537--45651	35	3.3	35	91	3	178	45	20	5	29	1.72
50171--50239	35	2.0	34	94	2	120	44	18	5	30	1.73
50677--50880	32	6.5	31	80	8	132	32	8	21	37	1.83
50677--50817	32	4.4	32	85	0	174	31	8	19	39	1.82
50802--50884	30	2.8	30	87	7	125	33	9	21	34	1.86
56703--56733	15	2.0	16	93	6	55	0	19	6	74	1.03
56695--56742	22	2.1	24	84	7	64	0	25	6	68	1.12
57142--57182	11	3.8	10	87	9	55	41	0	2	56	1.13
57178--57257	3	26.7	3	92	0	133	62	0	2	35	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57573--58235	114	5.8	114	95	1	1125	29	18	12	38	1.89
57573--58235	227	2.9	227	95	1	1139	29	18	12	38	1.89
57573--58240	341	2.0	341	93	1	1151	29	18	13	38	1.89
59033--59463	83	5.2	83	98	0	817	36	22	14	26	1.92
71225--71262	15	2.8	13	88	11	51	68	2	5	23	1.23
71256--71343	29	3.1	28	72	16	74	63	1	6	28	1.27
72972--73020	23	2.1	23	85	11	64	0	24	6	69	1.11
72980--73010	15	2.0	16	93	6	55	0	19	6	74	1.03
73414--73454	11	3.8	10	87	9	55	41	0	2	56	1.13
73450--73513	3	21.3	3	93	0	110	62	0	3	34	1.11
74444--74479	14	2.6	14	100	0	72	30	27	13	27	1.94
87871--87958	44	1.9	47	93	6	155	28	10	22	38	1.87
97617--97655	18	2.3	17	91	8	62	74	5	12	7	1.20
97610--97655	18	2.6	18	86	6	58	76	4	13	6	1.14
97624--97665	18	2.4	18	84	4	59	76	4	14	4	1.12
97651--97709	26	2.3	26	76	5	66	72	0	22	5	1.03
97686--97723	8	4.9	8	81	18	53	76	0	15	7	1.01
97694--97729	16	2.2	16	100	0	72	75	0	19	5	1.00
98756--98788	17	1.9	17	88	11	50	39	3	27	30	1.72
98946--99356	51	7.9	51	87	3	498	29	15	25	29	1.96
99006--99406	51	7.6	56	84	6	233	29	16	24	29	1.96
99210--99408	55	3.6	54	83	8	215	29	16	23	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
99250--99436	55	3.4	54	78	9	157	28	15	21	33	1.94
115455--115492	2	19.5	2	94	5	69	52	0	0	47	1.00
115549--115591	19	2.3	19	80	4	52	27	27	18	25	1.98
130657--130720	3	22.0	3	78	12	71	28	3	1	67	1.15
130655--130718	32	2.0	32	90	6	103	26	4	3	65	1.27
130839--130962	25	5.0	25	94	2	207	36	19	15	29	1.92
145541--145737	46	4.5	41	72	15	121	27	28	19	24	1.98
145530--145739	88	2.4	90	86	4	293	27	29	18	24	1.98
145943--146001	3	19.7	3	76	13	59	27	3	1	67	1.16
145951--146003	17	3.2	17	79	10	65	28	3	1	66	1.20
146119--146242	25	5.0	25	96	2	216	36	20	15	28	1.93

Tables:   1

The End!