genome.fa.s1986.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001986.1 Hibiscus syriacus cultivar Beakdansim tig00004047_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  69274

Tables:   1   

This is table  1  of  1  ( 67 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3905--3958	20	2.7	19	75	8	63	33	31	18	16	1.93
4069--4218	20	7.4	20	82	4	149	35	24	18	21	1.96
5071--5124	24	2.2	24	86	0	72	24	18	16	40	1.90
8009--8088	42	1.9	42	84	0	106	22	17	38	21	1.93
8364--8723	94	3.8	94	94	1	605	46	18	13	22	1.83
9081--9155	21	3.8	20	67	20	50	16	14	38	30	1.88
9522--9564	21	2.0	22	82	13	54	48	2	4	44	1.36
10414--10456	20	2.2	20	87	8	61	39	23	23	13	1.90
10401--10499	19	5.1	19	84	4	108	44	19	22	14	1.86
10401--10499	38	2.5	40	81	3	121	44	19	22	14	1.86
10519--10562	21	2.1	21	86	0	61	13	22	13	50	1.77
10527--10597	20	3.5	20	78	5	81	14	16	18	50	1.78
11134--11326	20	9.6	20	76	6	192	19	18	24	37	1.94
11136--11326	40	4.7	40	89	1	292	19	18	24	38	1.93
11136--11367	81	2.9	81	82	6	231	19	18	24	37	1.93
11136--11367	121	1.9	121	87	5	344	19	18	24	37	1.93
11416--11470	20	2.8	20	77	5	67	18	16	30	34	1.93
14835--14980	54	2.6	54	84	6	161	30	18	20	30	1.96
20791--20837	22	2.1	23	88	4	69	44	2	0	53	1.12
20786--20861	30	2.4	33	79	16	90	47	2	0	50	1.15
20827--20877	23	2.3	23	83	9	63	54	1	1	41	1.22
20944--20999	10	5.9	9	73	19	51	48	1	1	48	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21245--21274	15	2.0	15	93	0	51	43	10	6	40	1.64
23968--24006	16	2.4	16	100	0	78	53	25	0	20	1.45
29370--29427	2	30.0	2	78	13	59	44	1	1	51	1.21
29414--29697	36	7.3	38	75	17	126	45	3	5	45	1.44
29452--29547	47	2.1	46	82	5	113	45	3	6	44	1.44
29452--29547	45	2.1	44	82	5	111	45	3	6	44	1.44
29411--29755	77	4.4	76	78	17	309	44	2	5	46	1.42
29491--29755	112	2.3	115	84	10	364	44	3	5	47	1.41
29758--29803	13	3.5	13	82	11	58	26	4	0	69	1.07
31057--31105	24	2.0	24	88	7	73	12	4	6	77	1.09
31073--31110	20	1.9	20	84	10	51	15	2	5	76	1.08
31057--31135	24	3.0	25	78	17	72	16	7	3	72	1.23
31798--31859	6	10.0	6	77	6	61	74	4	1	19	1.09
31906--31932	7	3.9	7	100	0	54	74	0	11	14	1.08
33706--33736	15	2.1	15	93	0	53	48	19	9	22	1.78
33722--33920	102	2.0	102	83	6	251	42	11	17	28	1.84
33890--34137	36	7.0	36	72	10	179	41	11	18	27	1.85
33803--34136	139	2.4	139	87	2	467	41	12	18	27	1.86
34044--34106	21	3.3	21	62	25	57	44	6	20	28	1.76
34039--34151	36	3.1	34	87	11	154	38	9	19	31	1.84
39672--39747	6	12.0	6	79	8	62	72	6	1	19	1.14
39773--39829	20	2.9	20	86	2	71	75	3	7	14	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39790--39822	13	2.4	14	90	5	50	81	0	3	15	0.80
39790--39822	7	4.9	7	85	7	50	81	0	3	15	0.80
43714--43976	95	2.7	95	85	4	341	33	15	17	33	1.91
44761--45768	85	12.0	83	83	3	1067	34	23	18	23	1.96
44761--45768	169	6.0	169	84	2	1266	34	23	18	23	1.96
44852--45768	329	2.7	333	85	3	1234	34	23	18	23	1.96
45732--45808	40	1.9	40	97	0	145	36	15	22	25	1.93
46418--46709	38	7.6	38	75	10	155	45	4	6	43	1.50
46434--46752	40	8.1	41	78	11	212	45	4	5	44	1.46
46481--46754	38	7.0	37	81	10	248	45	3	5	45	1.44
46755--46788	14	2.5	14	90	4	52	17	2	0	79	0.86
48039--48077	2	19.5	2	100	0	78	48	0	0	51	1.00
48077--48146	21	3.4	20	81	13	72	15	4	2	77	1.05
48077--48187	5	21.4	5	73	21	79	17	6	1	74	1.11
48316--48355	20	2.0	20	85	9	55	37	0	7	55	1.29
49123--49282	43	3.7	43	76	13	132	23	13	6	56	1.60
53587--53623	18	2.0	18	89	5	56	54	10	0	35	1.36
54174--54273	43	2.3	45	89	6	152	33	4	1	62	1.21
57683--57919	113	2.1	113	88	1	341	40	10	13	35	1.78
61147--61179	16	2.1	16	94	0	57	33	21	12	33	1.90
62918--62977	22	2.7	22	77	7	59	55	0	1	43	1.10
63797--63862	12	5.1	12	72	16	51	31	0	3	65	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65405--65448	13	3.4	13	80	0	52	15	2	13	68	1.31

Tables:   1

The End!