Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001987.1 Hibiscus syriacus cultivar Beakdansim tig00004056_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51713

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
712--750
17
2.3
17
91
8
62
58
0
0
41
0.98
715--757
17
2.7
16
79
10
52
55
0
0
44
0.99
1707--1753
20
2.3
20
92
0
76
21
19
27
31
1.97
1740--1873
20
6.7
20
84
1
169
21
19
18
40
1.92
1870--1955
21
4.2
21
92
4
140
33
18
29
18
1.95
1863--1955
41
2.3
41
90
0
150
32
19
27
20
1.97
6264--6293
15
2.0
15
93
0
51
53
6
3
36
1.44
7467--7545
27
3.3
23
73
23
65
54
0
0
45
0.99
7488--7559
3
24.0
3
78
5
65
56
0
0
43
0.99
7483--7559
18
4.1
18
83
12
93
55
0
0
44
0.99
7488--7559
17
4.4
16
78
11
65
56
0
0
43
0.99
7704--8415
76
9.4
76
96
0
1284
34
23
19
23
1.96
11615--11677
31
2.0
31
96
0
117
33
15
17
33
1.92
11857--12069
114
1.9
114
92
2
356
30
21
15
32
1.94
16109--16189
36
2.3
35
75
10
83
55
8
17
18
1.66
19546--19575
15
2.0
15
93
0
51
53
6
3
36
1.44
20782--20853
3
24.0
3
78
5
74
58
0
0
41
0.98
28789--28835
20
2.3
20
92
0
76
21
17
44
17
1.86
29740--29866
43
3.0
42
79
9
123
77
1
7
12
1.04
29733--29884
52
2.9
52
79
14
145
75
2
7
13
1.13
29839--29940
8
12.5
8
78
12
84
76
1
1
19
0.98
29834--29978
48
3.0
46
77
16
127
75
2
3
19
1.05
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
29799--29978
12
14.7
12
68
20
81
75
2
4
17
1.07
29840--29977
17
7.7
17
68
26
74
74
2
2
20
1.05
30808--30847
3
14.0
3
84
10
57
62
2
0
35
1.09
30808--30861
12
4.2
13
80
17
60
61
3
0
35
1.14
30889--31226
36
9.3
39
73
15
137
44
5
4
46
1.45
31058--31237
36
4.9
35
78
15
179
42
6
3
47
1.46
30991--31237
106
2.3
108
82
12
285
42
5
4
47
1.46
30885--31206
178
1.8
175
83
11
429
44
4
4
46
1.46
31256--31314
2
29.5
2
100
0
118
50
0
0
49
1.00
31888--31959
35
2.1
35
97
0
135
40
11
18
30
1.85
32330--32369
18
2.3
18
83
8
57
25
5
2
67
1.23
32620--32652
2
16.5
2
100
0
66
48
0
0
51
1.00
32862--32941
40
2.0
40
86
9
112
31
5
7
56
1.49
32930--32970
2
20.5
2
100
0
82
48
0
0
51
1.00
33026--33058
13
2.4
14
90
5
50
18
6
0
75
1.00
41329--42202
106
8.3
106
87
4
1166
33
23
19
23
1.97
41455--42202
305
2.4
306
88
2
1084
33
23
19
23
1.97
42687--42758
35
2.1
35
100
0
144
40
11
20
27
1.87
43132--43171
18
2.3
18
83
8
57
25
5
2
67
1.23
43417--43441
2
12.5
2
100
0
50
48
0
0
52
1.00
43723--43753
2
15.5
2
100
0
62
48
0
0
51
1.00
43794--43851
18
3.2
18
78
11
66
17
8
0
74
1.06
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43794--43866
36
2.0
37
84
12
98
16
10
0
72
1.11
47249--47295
16
3.1
15
84
12
60
27
0
0
72
0.85
47251--47301
19
2.7
18
85
14
75
27
0
0
72
0.85
47252--47298
14
3.3
15
82
14
64
27
0
0
72
0.85
47253--47298
23
2.0
22
91
4
74
28
0
0
71
0.86
47251--47306
20
3.2
17
79
20
62
25
0
0
75
0.81

Tables:   1

The End!