Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001988.1 Hibiscus syriacus cultivar Beakdansim tig00004059_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  81214

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6140--6185
16
2.9
16
87
6
58
32
0
0
67
0.91
10140--10262
51
2.4
50
83
1
138
17
32
28
21
1.96
10375--10413
20
2.0
19
90
5
60
33
23
0
43
1.54
12153--12191
18
2.2
18
100
0
78
25
30
23
20
1.98
12692--12758
24
2.6
25
73
17
66
26
2
4
65
1.26
16289--16412
50
2.5
50
82
4
160
29
19
23
27
1.98
16425--16550
50
2.5
50
83
5
146
19
29
31
19
1.96
23125--23160
2
18.0
2
100
0
72
50
0
0
50
1.00
28829--28935
24
3.7
29
72
26
82
42
1
4
50
1.34
28880--28935
24
2.3
24
100
0
112
46
0
3
50
1.19
29785--29818
5
6.8
5
93
0
59
58
38
2
0
1.13
30621--30658
2
19.0
2
100
0
76
50
0
0
50
1.00
31527--31562
16
2.2
17
90
5
56
72
8
2
16
1.21
31638--31693
19
2.9
19
73
7
60
69
3
3
23
1.20
31890--31955
25
2.7
24
84
9
80
68
1
6
24
1.21
32630--32668
20
2.0
20
89
0
60
12
38
35
12
1.82
33878--34336
211
2.2
211
93
1
787
22
18
24
33
1.97
33878--34336
105
4.4
105
94
1
785
22
18
24
33
1.97
35079--35175
51
1.9
51
86
0
140
13
23
15
47
1.81
45528--45561
15
2.2
16
89
5
52
70
8
2
17
1.25
45534--45567
17
2.0
17
88
0
50
67
5
5
20
1.33
45898--45970
26
2.8
25
80
15
69
68
1
5
24
1.19
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46648--46686
20
2.0
20
89
0
60
12
38
35
12
1.82
48617--48643
13
2.1
13
100
0
54
44
7
25
22
1.79
48925--48951
13
2.1
13
100
0
54
44
7
25
22
1.79
48464--49081
308
2.0
308
99
0
1218
39
9
19
30
1.85
49174--49200
13
2.1
13
100
0
54
44
7
25
22
1.79
48898--49639
249
3.0
249
95
2
1330
38
10
21
29
1.87
50136--50179
22
2.0
22
86
0
61
52
11
0
36
1.38
54295--54339
4
11.2
4
87
0
63
42
31
2
24
1.67
55173--55201
12
2.4
12
100
0
58
65
0
34
0
0.93
62287--62597
155
2.0
155
98
0
595
35
17
22
25
1.95
66238--66397
83
1.9
83
97
0
302
48
3
6
42
1.44
67569--67614
19
2.3
20
78
10
51
34
43
0
21
1.53
67884--67910
2
13.5
2
100
0
54
48
0
0
51
1.00
68998--69062
33
2.0
33
96
0
121
35
18
15
30
1.92
69763--69838
36
2.1
36
97
0
143
43
14
10
31
1.79
74281--74310
15
2.0
15
100
0
60
13
46
26
13
1.80
74731--74804
35
2.1
36
92
5
125
43
14
10
31
1.80
80494--80521
2
14.0
2
100
0
56
50
0
0
50
1.00
80569--80657
32
2.7
32
79
11
99
59
3
0
37
1.14

Tables:   1

The End!