genome.fa.s199.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000199.1 Hibiscus syriacus cultivar Beakdansim tig00000355_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66145

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1976--2011	19	1.9	18	88	5	54	47	8	8	36	1.64
5062--5148	45	1.9	45	90	0	138	29	11	22	35	1.90
7134--7174	18	2.3	18	95	0	73	41	12	26	19	1.87
10992--11035	21	2.1	21	100	0	88	34	27	9	29	1.87
14703--14879	7	23.7	7	72	19	101	75	1	18	5	1.04
14700--14876	15	11.7	16	81	14	166	75	1	18	5	1.06
14827--14885	21	2.9	19	78	14	55	83	0	11	5	0.81
16118--16226	37	2.9	37	90	5	159	39	20	18	22	1.92
16257--16398	55	2.6	54	79	4	158	30	19	23	25	1.98
18831--18875	22	2.0	22	86	4	63	31	31	28	8	1.88
22806--22849	21	2.1	21	86	0	61	29	27	27	15	1.96
22875--22919	22	2.0	22	86	4	63	31	33	26	8	1.87
24287--24509	100	2.2	102	92	4	380	26	13	22	37	1.91
24513--24623	46	2.4	46	96	0	204	23	26	24	26	2.00
24513--24631	23	5.3	23	80	2	134	23	24	23	28	2.00
37667--37775	47	2.3	48	84	4	141	34	21	15	28	1.94
37667--37777	24	4.7	24	85	2	134	35	20	15	28	1.93
42026--42124	24	4.2	24	78	2	83	38	19	17	25	1.93
42040--42133	24	4.0	23	81	5	107	36	18	20	25	1.95
46184--46238	2	27.5	2	100	0	110	50	49	0	0	1.00
46436--46553	24	5.0	24	89	2	157	36	20	19	23	1.95
48655--48711	25	2.4	23	88	5	87	7	19	49	24	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59098--59189	43	2.1	43	91	2	148	46	4	14	34	1.64
60095--60133	16	2.4	16	91	0	69	41	17	23	17	1.91

Tables:   1

The End!