Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01001991.1 Hibiscus syriacus cultivar Beakdansim tig00004072_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2373627
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 11 of 13
Found at i:1963046 original size:65 final size:64
Alignment explanation
Indices: 1962958--1963096 Score: 174
Period size: 65 Copynumber: 2.2 Consensus size: 64
1962948 TCTTTAACAT
** *
1962958 GTGCATCGATGCACTACCCATGCATCGATACACTAATCACCTTCGATGTTTTCA-TTTTAAGGGG
1 GTGCATCGATGCACTACCCATGCATCGATACACTAATCACAGTCGATGTTTCCATTTTTAA--GG
1963022 G
64 G
* * * *
1963023 GTGCATCGATGCACT-CCTTATGCATCGATGCACTAATTACAGTCGATGTTTCCATTTTTAATGG
1 GTGCATCGATGCACTACC-CATGCATCGATACACTAATCACAGTCGATGTTTCCATTTTTAAGGG
1963087 GTGCATCGAT
1 GTGCATCGAT
1963097 ACACATTGAA
Statistics
Matches: 65, Mismatches: 7, Indels: 5
0.84 0.09 0.06
Matches are distributed among these distances:
64 14 0.22
65 45 0.69
66 6 0.09
ACGTcount: A:0.24, C:0.23, G:0.20, T:0.33
Consensus pattern (64 bp):
GTGCATCGATGCACTACCCATGCATCGATACACTAATCACAGTCGATGTTTCCATTTTTAAGGG
Found at i:1964802 original size:21 final size:21
Alignment explanation
Indices: 1964776--1964818 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
1964766 CCATACCCCT
*
1964776 AACTTTAAACCCTAAATTATA
1 AACTTTAAACCCCAAATTATA
1964797 AACTTTAAACCCCAAATTATA
1 AACTTTAAACCCCAAATTATA
1964818 A
1 A
1964819 CTCCATAATA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.49, C:0.21, G:0.00, T:0.30
Consensus pattern (21 bp):
AACTTTAAACCCCAAATTATA
Found at i:1965063 original size:21 final size:21
Alignment explanation
Indices: 1965037--1965077 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
1965027 CCATGGATAG
* *
1965037 TGCTACCGTGTACCGATGCAT
1 TGCTACAGTGTAACGATGCAT
1965058 TGCTACAGTGTAACGATGCA
1 TGCTACAGTGTAACGATGCA
1965078 CAAAAATATC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.24, C:0.24, G:0.24, T:0.27
Consensus pattern (21 bp):
TGCTACAGTGTAACGATGCAT
Found at i:1965820 original size:32 final size:32
Alignment explanation
Indices: 1965753--1965871 Score: 163
Period size: 32 Copynumber: 3.8 Consensus size: 32
1965743 TAATCTATCT
1965753 ATATGTCCCGAAGAACATAGGTAA-ACTGTCC
1 ATATGTCCCGAAGAACATAGGTAATACTGTCC
* *
1965784 ATATGTCCCGAAGAACATAAGTAATATTGTCC
1 ATATGTCCCGAAGAACATAGGTAATACTGTCC
* *
1965816 ATATGTCCCGAA-AGACATAGGTAATCCTATCC
1 ATATGTCCCGAAGA-ACATAGGTAATACTGTCC
1965848 ATATGTCCCGAA-AGACATAGGTAA
1 ATATGTCCCGAAGA-ACATAGGTAA
1965872 CCCTCGACTT
Statistics
Matches: 80, Mismatches: 6, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
31 24 0.30
32 56 0.70
ACGTcount: A:0.37, C:0.21, G:0.18, T:0.24
Consensus pattern (32 bp):
ATATGTCCCGAAGAACATAGGTAATACTGTCC
Found at i:1969732 original size:15 final size:15
Alignment explanation
Indices: 1969709--1969738 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
1969699 TTTCGCACTT
1969709 CTGAATGATTCAGTA
1 CTGAATGATTCAGTA
*
1969724 CTGACTGATTCAGTA
1 CTGAATGATTCAGTA
1969739 AAATAATGTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.33
Consensus pattern (15 bp):
CTGAATGATTCAGTA
Found at i:1969876 original size:15 final size:16
Alignment explanation
Indices: 1969838--1969878 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
1969828 ACAGAGCCTC
*
1969838 TGAATCATTCAGCATT
1 TGAATCATTCAGCACT
*
1969854 TGAATCATTCAGCGCT
1 TGAATCATTCAGCACT
1969870 T-AATCATTC
1 TGAATCATTC
1969879 TGAAGTAAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 8 0.35
16 15 0.65
ACGTcount: A:0.29, C:0.22, G:0.12, T:0.37
Consensus pattern (16 bp):
TGAATCATTCAGCACT
Found at i:1970412 original size:31 final size:31
Alignment explanation
Indices: 1970331--1970395 Score: 87
Period size: 31 Copynumber: 2.1 Consensus size: 31
1970321 TTTTGAGTAG
* * *
1970331 AATACTAATTCAAC-CTTAAACTTTAGATAA
1 AATAATAATTTAACTCTTAAACTTTAGACAA
*
1970361 AATAATAGTTTAACTCTTAAACTTTAGACAA
1 AATAATAATTTAACTCTTAAACTTTAGACAA
1970392 AATA
1 AATA
1970396 TCAATTTGAC
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
30 11 0.37
31 19 0.63
ACGTcount: A:0.48, C:0.14, G:0.05, T:0.34
Consensus pattern (31 bp):
AATAATAATTTAACTCTTAAACTTTAGACAA
Found at i:1971073 original size:26 final size:24
Alignment explanation
Indices: 1971030--1971078 Score: 62
Period size: 26 Copynumber: 2.0 Consensus size: 24
1971020 AATTATAAGA
*
1971030 TAGAATTTTAAATTAATTTTAAAT
1 TAGAATTTTAAATTAATTCTAAAT
*
1971054 TAGAATATTTCAATTGAATTCTAAA
1 TAGAAT-TTTAAATT-AATTCTAAA
1971079 GTACCATTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 6 0.29
25 7 0.33
26 8 0.38
ACGTcount: A:0.45, C:0.04, G:0.06, T:0.45
Consensus pattern (24 bp):
TAGAATTTTAAATTAATTCTAAAT
Found at i:1972077 original size:17 final size:18
Alignment explanation
Indices: 1972055--1972102 Score: 53
Period size: 17 Copynumber: 2.7 Consensus size: 18
1972045 TTTGATATTT
1972055 TTTAATTTTTTATTA-TA
1 TTTAATTTTTTATTAGTA
* *
1972072 TTTAATGTATTATTAGTA
1 TTTAATTTTTTATTAGTA
*
1972090 TATAAATTTTTTA
1 T-TTAATTTTTTA
1972103 GATGGTTACT
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
17 13 0.54
18 3 0.12
19 8 0.33
ACGTcount: A:0.33, C:0.00, G:0.04, T:0.62
Consensus pattern (18 bp):
TTTAATTTTTTATTAGTA
Found at i:1972724 original size:2 final size:2
Alignment explanation
Indices: 1972717--1972782 Score: 132
Period size: 2 Copynumber: 33.0 Consensus size: 2
1972707 TTGAATCGTG
1972717 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1972759 TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA
1972783 GAAATAGGGG
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 64 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:1984346 original size:49 final size:46
Alignment explanation
Indices: 1984275--1984367 Score: 150
Period size: 49 Copynumber: 2.0 Consensus size: 46
1984265 AATCGGTTAT
1984275 ACCACCCTACGATCCAAGATCAATTGATGTAAAAACCTAAACAGTA
1 ACCACCCTACGATCCAAGATCAATTGATGTAAAAACCTAAACAGTA
*
1984321 ACCACCCTACGGTACTCCAAGATCAATTGATGTGAAAACCTAAACAG
1 ACCACCCTAC-G-A-TCCAAGATCAATTGATGTAAAAACCTAAACAG
1984368 GTGTTCAAAT
Statistics
Matches: 43, Mismatches: 1, Indels: 3
0.91 0.02 0.06
Matches are distributed among these distances:
46 10 0.23
47 1 0.02
48 1 0.02
49 31 0.72
ACGTcount: A:0.41, C:0.27, G:0.13, T:0.19
Consensus pattern (46 bp):
ACCACCCTACGATCCAAGATCAATTGATGTAAAAACCTAAACAGTA
Found at i:1986359 original size:19 final size:18
Alignment explanation
Indices: 1986334--1986381 Score: 55
Period size: 16 Copynumber: 2.7 Consensus size: 18
1986324 GAGAACTACA
1986334 AAATAATTATAATATAAAT
1 AAATAA-TATAATATAAAT
*
1986353 TAAT-A-ATAATATAAAT
1 AAATAATATAATATAAAT
1986369 AAATAAATATAAT
1 AAAT-AATATAAT
1986382 GTTTTAGTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 6
0.75 0.06 0.19
Matches are distributed among these distances:
16 14 0.58
18 2 0.08
19 8 0.33
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (18 bp):
AAATAATATAATATAAAT
Found at i:1986361 original size:16 final size:16
Alignment explanation
Indices: 1986337--1986374 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
1986327 AACTACAAAA
*
1986337 TAATTATAATATAAAT
1 TAATAATAATATAAAT
1986353 TAATAATAATATAAAT
1 TAATAATAATATAAAT
*
1986369 AAATAA
1 TAATAA
1986375 ATATAATGTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (16 bp):
TAATAATAATATAAAT
Found at i:1987049 original size:245 final size:246
Alignment explanation
Indices: 1986717--1987299 Score: 725
Period size: 245 Copynumber: 2.4 Consensus size: 246
1986707 AGCCCATTCT
* * * * * *
1986717 TTGAGTTGGATATCCTTCATCGTGAAGTTAAAATCCAATCTAGAGTTGA-GCTTTGCTTATGGGC
1 TTGAATTGGATATCCTTCATCGTGAAGTTGAAATCCAATCTAAAGATGATG--TTGCTGATGAGC
*
1986781 ACGATATCATTCGTCGTGAAGTTGAAATCGTGGATGGCCTC-TTCGTCGTGAAGTTGAACCTTGA
64 ACGATATCATTCGTCGTGAAGTTGAAACCGTGGATGGCC-CATTCGTCGTGAAGTTGAACCTTGA
** ** *
1986845 ATTGGATATCCTTCGTCATAAAGTTGAAATCCAATCTTGAGATGGTTGTT-T-GTGGGCACGATA
128 ATTGGATATCCTTCGTCATAAAGTTGAAATCCAATCTAAAGATGAATGTTATGGTGAGCACGAT-
* ** *
1986908 T-CCTTCTTCGTGAAGTTGAAATCGTGGATGGCCCATTCGTTGTGAAGTTGAGCC
192 TCCCTTCGTCAAGAAGTTGAAACCGTGGATGGCCCATTCGTTGTGAAGTTGAGCC
*
1986962 TTGAATTGGATATCCTTCATCGTGAAGTTGAAATCCAATCTAAAGATGCATGTTGCTGGTGAGCA
1 TTGAATTGGATATCCTTCATCGTGAAGTTGAAATCCAATCTAAAGATG-ATGTTGCTGATGAGCA
* * * *
1987027 CGAT-TCCCTTCGTCGTGAAGTTGAAACCGTTGATGGCCCATTCGTTGTGAAGTTGAGCCTTGAA
65 CGATAT-CATTCGTCGTGAAGTTGAAACCGTGGATGGCCCATTCGTCGTGAAGTTGAACCTTGAA
* * * *
1987091 TTTGATATCCTTCGTCGTGAAGTTGAAATCCAATCTAAAGATGAATGTTACTGGTGAGCATGATT
129 TTGGATATCCTTCGTCATAAAGTTGAAATCCAATCTAAAGATGAATGTTA-TGGTGAGCACGATT
*
1987156 CCCTTCGTCAAGAAGTTGAAACCGTTGATGGCCCATTCGTTGTGAAGTTGAGCC
193 CCCTTCGTCAAGAAGTTGAAACCGTGGATGGCCCATTCGTTGTGAAGTTGAGCC
* ** *
1987210 TTGGATTGGATATCCTTCGCCGTGAAGTTGAAATCCAATCTAAAGATGAATGTTG-T-TTCGAGT
1 TTGAATTGGATATCCTTCATCGTGAAGTTGAAATCCAATCTAAAGATG-ATGTTGCTGAT-GAG-
* *
1987273 C-CAATATCTTTCGTCGTGAAGTTGAAA
63 CACGATATCATTCGTCGTGAAGTTGAAA
1987300 TTGGCTCTGA
Statistics
Matches: 294, Mismatches: 33, Indels: 20
0.85 0.10 0.06
Matches are distributed among these distances:
244 2 0.01
245 151 0.51
246 2 0.01
247 29 0.10
248 110 0.37
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.33
Consensus pattern (246 bp):
TTGAATTGGATATCCTTCATCGTGAAGTTGAAATCCAATCTAAAGATGATGTTGCTGATGAGCAC
GATATCATTCGTCGTGAAGTTGAAACCGTGGATGGCCCATTCGTCGTGAAGTTGAACCTTGAATT
GGATATCCTTCGTCATAAAGTTGAAATCCAATCTAAAGATGAATGTTATGGTGAGCACGATTCCC
TTCGTCAAGAAGTTGAAACCGTGGATGGCCCATTCGTTGTGAAGTTGAGCC
Found at i:1987258 original size:124 final size:123
Alignment explanation
Indices: 1986717--1987263 Score: 701
Period size: 124 Copynumber: 4.4 Consensus size: 123
1986707 AGCCCATTCT
* * * * * * ** *
1986717 TTGAGTTGGATATCCTTCATCGTGAAGTTAAAATCCAATCTAGAGTTGAGCT-TTGCTTATGGGC
1 TTGAATTGGATATCCTTCGTCGTGAAGTTGAAATCCAATCTAAAGATGA-ATGTT-CTGGTGAGC
* * * *
1986781 ACGATAT-CATTCGTCGTGAAGTTGAAATCGTGGATGGCCTC-TTCGTCGTGAAGTTGAACC
64 ACGAT-TCCCTTCGTCGTGAAGTTGAAACCGTGGATGGCC-CATTCGTTGTGAAGTTGAGCC
* * ** ** *
1986841 TTGAATTGGATATCCTTCGTCATAAAGTTGAAATCCAATCTTGAGATGGTTGTT-T-GTGGGCAC
1 TTGAATTGGATATCCTTCGTCGTGAAGTTGAAATCCAATCTAAAGATGAATGTTCTGGTGAGCAC
* *
1986904 GATAT-CCTTCTTCGTGAAGTTGAAATCGTGGATGGCCCATTCGTTGTGAAGTTGAGCC
66 GAT-TCCCTTCGTCGTGAAGTTGAAACCGTGGATGGCCCATTCGTTGTGAAGTTGAGCC
* *
1986962 TTGAATTGGATATCCTTCATCGTGAAGTTGAAATCCAATCTAAAGATGCATGTTGCTGGTGAGCA
1 TTGAATTGGATATCCTTCGTCGTGAAGTTGAAATCCAATCTAAAGATGAATGTT-CTGGTGAGCA
*
1987027 CGATTCCCTTCGTCGTGAAGTTGAAACCGTTGATGGCCCATTCGTTGTGAAGTTGAGCC
65 CGATTCCCTTCGTCGTGAAGTTGAAACCGTGGATGGCCCATTCGTTGTGAAGTTGAGCC
*
1987086 TTGAATTTGATATCCTTCGTCGTGAAGTTGAAATCCAATCTAAAGATGAATGTTACTGGTGAGCA
1 TTGAATTGGATATCCTTCGTCGTGAAGTTGAAATCCAATCTAAAGATGAATGTT-CTGGTGAGCA
* ** *
1987151 TGATTCCCTTCGTCAAGAAGTTGAAACCGTTGATGGCCCATTCGTTGTGAAGTTGAGCC
65 CGATTCCCTTCGTCGTGAAGTTGAAACCGTGGATGGCCCATTCGTTGTGAAGTTGAGCC
* *
1987210 TTGGATTGGATATCCTTCGCCGTGAAGTTGAAATCCAATCTAAAGATGAATGTT
1 TTGAATTGGATATCCTTCGTCGTGAAGTTGAAATCCAATCTAAAGATGAATGTT
1987264 GTTTCGAGTC
Statistics
Matches: 382, Mismatches: 35, Indels: 12
0.89 0.08 0.03
Matches are distributed among these distances:
120 1 0.00
121 106 0.28
122 1 0.00
123 3 0.01
124 271 0.71
ACGTcount: A:0.25, C:0.18, G:0.24, T:0.33
Consensus pattern (123 bp):
TTGAATTGGATATCCTTCGTCGTGAAGTTGAAATCCAATCTAAAGATGAATGTTCTGGTGAGCAC
GATTCCCTTCGTCGTGAAGTTGAAACCGTGGATGGCCCATTCGTTGTGAAGTTGAGCC
Found at i:1990327 original size:17 final size:18
Alignment explanation
Indices: 1990295--1990330 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
1990285 TGCAGATGAT
1990295 GAAAATAAAATAAAAAGA
1 GAAAATAAAATAAAAAGA
*
1990313 GAAAA-AAAATGAAAAGA
1 GAAAATAAAATAAAAAGA
1990330 G
1 G
1990331 TTAGTGAGGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 12 0.71
18 5 0.29
ACGTcount: A:0.75, C:0.00, G:0.17, T:0.08
Consensus pattern (18 bp):
GAAAATAAAATAAAAAGA
Found at i:1991330 original size:11 final size:11
Alignment explanation
Indices: 1991314--1991339 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
1991304 GTTAAATAAG
1991314 AAATATTAAAT
1 AAATATTAAAT
1991325 AAATATTAAAT
1 AAATATTAAAT
1991336 AAAT
1 AAAT
1991340 TAAAGCAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (11 bp):
AAATATTAAAT
Found at i:1992397 original size:16 final size:17
Alignment explanation
Indices: 1992373--1992411 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
1992363 ACCTACAAAA
*
1992373 TAATTATAAT-ATAAAT
1 TAATAATAATAATAAAT
1992389 TAATAATAATAATAAAT
1 TAATAATAATAATAAAT
*
1992406 AAATAA
1 TAATAA
1992412 ATATAATGTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 9 0.45
17 11 0.55
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (17 bp):
TAATAATAATAATAAAT
Found at i:1994130 original size:29 final size:29
Alignment explanation
Indices: 1994088--1994146 Score: 109
Period size: 29 Copynumber: 2.0 Consensus size: 29
1994078 ATTTTCACCT
1994088 AACTAAATTGATGTAAGCAATGACATCAA
1 AACTAAATTGATGTAAGCAATGACATCAA
*
1994117 AACTGAATTGATGTAAGCAATGACATCAA
1 AACTAAATTGATGTAAGCAATGACATCAA
1994146 A
1 A
1994147 TTAATTTAGG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.47, C:0.14, G:0.15, T:0.24
Consensus pattern (29 bp):
AACTAAATTGATGTAAGCAATGACATCAA
Found at i:1998808 original size:29 final size:29
Alignment explanation
Indices: 1998766--1998824 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
1998756 ATTTTCACCT
1998766 AACTAAATTGATGTAAGCAATGACATCAA
1 AACTAAATTGATGTAAGCAATGACATCAA
1998795 AACTAAATTGATGTAAGCAATGACATCAA
1 AACTAAATTGATGTAAGCAATGACATCAA
1998824 A
1 A
1998825 TTAATTTAGG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.49, C:0.14, G:0.14, T:0.24
Consensus pattern (29 bp):
AACTAAATTGATGTAAGCAATGACATCAA
Found at i:2007598 original size:2 final size:2
Alignment explanation
Indices: 2007591--2007643 Score: 106
Period size: 2 Copynumber: 26.5 Consensus size: 2
2007581 GGTGAATCGA
2007591 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
2007633 AT AT AT AT AT A
1 AT AT AT AT AT A
2007644 ATAAAGGGAA
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 51 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:2008121 original size:37 final size:37
Alignment explanation
Indices: 2008071--2008143 Score: 119
Period size: 37 Copynumber: 2.0 Consensus size: 37
2008061 CACTAAACAC
2008071 TCTTTTTCCTCCAACTAAGTGTAGAGAAATTTTTTAT
1 TCTTTTTCCTCCAACTAAGTGTAGAGAAATTTTTTAT
* **
2008108 TCTTTTTTCTCCAACTAAGTGTAGAGAGTTTTTTTA
1 TCTTTTTCCTCCAACTAAGTGTAGAGAAATTTTTTA
2008144 ACGAGGTTCT
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.25, C:0.15, G:0.12, T:0.48
Consensus pattern (37 bp):
TCTTTTTCCTCCAACTAAGTGTAGAGAAATTTTTTAT
Found at i:2015764 original size:23 final size:22
Alignment explanation
Indices: 2015738--2015810 Score: 66
Period size: 23 Copynumber: 3.5 Consensus size: 22
2015728 GATATAGACG
2015738 AACACTAACAAGCTGCATTACTT
1 AACAC-AACAAGCTGCATTACTT
* *
2015761 AACA-AACAA-C--CATGAATT
1 AACACAACAAGCTGCATTACTT
*
2015779 AACACAAACAAGCTGCATTCCTT
1 AACAC-AACAAGCTGCATTACTT
2015802 AACA-AACAA
1 AACACAACAA
2015811 ACACAAACAA
Statistics
Matches: 40, Mismatches: 5, Indels: 12
0.70 0.09 0.21
Matches are distributed among these distances:
18 10 0.25
20 6 0.15
21 11 0.28
23 13 0.32
ACGTcount: A:0.48, C:0.26, G:0.07, T:0.19
Consensus pattern (22 bp):
AACACAACAAGCTGCATTACTT
Found at i:2015768 original size:21 final size:21
Alignment explanation
Indices: 2015744--2015810 Score: 68
Period size: 21 Copynumber: 3.2 Consensus size: 21
2015734 GACGAACACT
2015744 AACAAGCTGCATTACTTAACA
1 AACAAGCTGCATTACTTAACA
* *
2015765 AACAA-C--CATGAATTAACACA
1 AACAAGCTGCATTACTT-A-ACA
*
2015785 AACAAGCTGCATTCCTTAACA
1 AACAAGCTGCATTACTTAACA
2015806 AACAA
1 AACAA
2015811 ACACAAACAA
Statistics
Matches: 36, Mismatches: 5, Indels: 10
0.71 0.10 0.20
Matches are distributed among these distances:
18 6 0.17
19 1 0.03
20 9 0.25
21 14 0.39
22 1 0.03
23 5 0.14
ACGTcount: A:0.48, C:0.25, G:0.07, T:0.19
Consensus pattern (21 bp):
AACAAGCTGCATTACTTAACA
Found at i:2016195 original size:31 final size:29
Alignment explanation
Indices: 2016135--2016195 Score: 68
Period size: 31 Copynumber: 2.0 Consensus size: 29
2016125 GGAATTGTTA
* * *
2016135 ATCAAAATGAAAATTTGTAAAGTTTAGTG
1 ATCAAAATAAAAATTTGTAAAGGTCAGTG
*
2016164 ATCAAAATAAAAAACTTTTTAAAGGTCAGTG
1 ATCAAAAT-AAAAA-TTTGTAAAGGTCAGTG
2016195 A
1 A
2016196 CCACTGGTAG
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
29 8 0.31
30 4 0.15
31 14 0.54
ACGTcount: A:0.48, C:0.07, G:0.15, T:0.31
Consensus pattern (29 bp):
ATCAAAATAAAAATTTGTAAAGGTCAGTG
Found at i:2024714 original size:21 final size:21
Alignment explanation
Indices: 2024690--2024751 Score: 74
Period size: 21 Copynumber: 3.0 Consensus size: 21
2024680 GGCATGTGAA
2024690 ATCTATGTCCCGAAGGACTTC
1 ATCTATGTCCCGAAGGACTTC
*
2024711 ATCTATGTCCCGAATGACCTGTC
1 ATCTATGTCCCGAAGGA-CT-TC
*
2024734 A--TACGTCCCGAAGGACTT
1 ATCTATGTCCCGAAGGACTT
2024752 ATGTAACCCT
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
19 1 0.03
20 2 0.06
21 28 0.78
22 2 0.06
23 3 0.08
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.27
Consensus pattern (21 bp):
ATCTATGTCCCGAAGGACTTC
Found at i:2025503 original size:18 final size:18
Alignment explanation
Indices: 2025480--2025526 Score: 85
Period size: 18 Copynumber: 2.6 Consensus size: 18
2025470 CCTAGCTGTA
2025480 GTATCGATACTAATCCGG
1 GTATCGATACTAATCCGG
2025498 GTATCGATACTAATCCGG
1 GTATCGATACTAATCCGG
*
2025516 TTATCGATACT
1 GTATCGATACT
2025527 CATTTTGCAT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (18 bp):
GTATCGATACTAATCCGG
Found at i:2025607 original size:35 final size:35
Alignment explanation
Indices: 2025558--2025645 Score: 142
Period size: 35 Copynumber: 2.5 Consensus size: 35
2025548 GTTTCAAAAA
* *
2025558 TGGTACCGATACTATCCTTATGGTATCGGTACCCT
1 TGGTATCGATACTATCCTTATGGTATCGGGACCCT
*
2025593 TGGTATCGACACTATCCTTATGGTATCGGGACCCT
1 TGGTATCGATACTATCCTTATGGTATCGGGACCCT
2025628 TGGTATCGATACTA-CCTT
1 TGGTATCGATACTATCCTT
2025646 CCCAGTATCG
Statistics
Matches: 49, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
34 4 0.08
35 45 0.92
ACGTcount: A:0.20, C:0.25, G:0.20, T:0.34
Consensus pattern (35 bp):
TGGTATCGATACTATCCTTATGGTATCGGGACCCT
Found at i:2025618 original size:20 final size:19
Alignment explanation
Indices: 2025557--2025620 Score: 55
Period size: 20 Copynumber: 3.5 Consensus size: 19
2025547 TGTTTCAAAA
*
2025557 ATGGTACCGATACTATCCTT
1 ATGGTATCGA-ACTATCCTT
* *
2025577 ATGGTATCG--GTA-CCCT
1 ATGGTATCGAACTATCCTT
2025593 -TGGTATCGACACTATCCTT
1 ATGGTATCGA-ACTATCCTT
2025612 ATGGTATCG
1 ATGGTATCG
2025621 GGACCCTTGG
Statistics
Matches: 34, Mismatches: 5, Indels: 10
0.69 0.10 0.20
Matches are distributed among these distances:
15 8 0.24
16 3 0.09
17 2 0.06
18 2 0.06
19 3 0.09
20 16 0.47
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.34
Consensus pattern (19 bp):
ATGGTATCGAACTATCCTT
Found at i:2025654 original size:35 final size:35
Alignment explanation
Indices: 2025558--2025655 Score: 99
Period size: 35 Copynumber: 2.8 Consensus size: 35
2025548 GTTTCAAAAA
* * ** *
2025558 TGGTACCGATACTATCCTTATGGTATCGGTACCCT
1 TGGTATCGACACTATCCTTACAGTATCGGGACCCT
**
2025593 TGGTATCGACACTATCCTTATGGTATCGGGACCCT
1 TGGTATCGACACTATCCTTACAGTATCGGGACCCT
* *
2025628 TGGTATCGATACTA-CCTTCCCAGTATCG
1 TGGTATCGACACTATCCTT-ACAGTATCG
2025656 ATACTACCAT
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
34 4 0.07
35 51 0.93
ACGTcount: A:0.20, C:0.27, G:0.20, T:0.33
Consensus pattern (35 bp):
TGGTATCGACACTATCCTTACAGTATCGGGACCCT
Found at i:2028468 original size:24 final size:24
Alignment explanation
Indices: 2028437--2028484 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
2028427 CTGGAGCTTT
2028437 TTTCAAAATTCTCTTTAACGTTTC
1 TTTCAAAATTCTCTTTAACGTTTC
2028461 TTTCAAAATTCTCTTTAACGTTTC
1 TTTCAAAATTCTCTTTAACGTTTC
2028485 AAAACTTTCT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.04, T:0.50
Consensus pattern (24 bp):
TTTCAAAATTCTCTTTAACGTTTC
Found at i:2028711 original size:2 final size:2
Alignment explanation
Indices: 2028706--2028757 Score: 104
Period size: 2 Copynumber: 26.0 Consensus size: 2
2028696 TTTTTTTTGG
2028706 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
2028748 AT AT AT AT AT
1 AT AT AT AT AT
2028758 TAGGTGGGGG
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 50 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:2032157 original size:39 final size:38
Alignment explanation
Indices: 2032112--2032213 Score: 102
Period size: 38 Copynumber: 2.6 Consensus size: 38
2032102 TGTTTTCAAA
2032112 ATTATATAGTTTTAAAAAATGTTTTTTTTAAAACTATAT
1 ATTATATAGTTTT-AAAAATGTTTTTTTTAAAACTATAT
* * *
2032151 ATTATATAAGTTTTTAAAATG---ATTTTAAACCTATAT
1 ATTATAT-AGTTTTAAAAATGTTTTTTTTAAAACTATAT
*
2032187 AATATATATGTGTTTTAAAAATGTTTT
1 -AT-TATAT-AGTTTTAAAAATGTTTT
2032214 AAAAATTATA
Statistics
Matches: 50, Mismatches: 7, Indels: 10
0.75 0.10 0.15
Matches are distributed among these distances:
36 13 0.26
37 2 0.04
38 16 0.32
39 13 0.26
40 6 0.12
ACGTcount: A:0.40, C:0.03, G:0.07, T:0.50
Consensus pattern (38 bp):
ATTATATAGTTTTAAAAATGTTTTTTTTAAAACTATAT
Found at i:2032208 original size:38 final size:35
Alignment explanation
Indices: 2032137--2032327 Score: 138
Period size: 29 Copynumber: 5.6 Consensus size: 35
2032127 AAAATGTTTT
*
2032137 TTTTAAAACTATATATTATATAAGTTTTTAAAATG
1 TTTTAAAACTATATAATATATAAGTTTTTAAAATG
* *
2032172 ATTTTAAACCTATATAATATATATGTGTTTTAAAAATG
1 -TTTTAAAACTATATAATATATAAGT-TTTT-AAAATG
* *
2032210 TTTTAAAA--AT-T-ATATAT-A-TTTTCAAAATA
1 TTTTAAAACTATATAATATATAAGTTTTTAAAATG
* *
2032239 TTTTAAAA--A-CT-ATATAT-A-TTTTCAAAATG
1 TTTTAAAACTATATAATATATAAGTTTTTAAAATG
* *
2032268 TTTTAAAAACTATATAATATATATA-TTTTCAAAAATAT
1 TTTT-AAAACTATATAATATATA-AGTTTT-TAAAAT-G
*
2032306 TTTTAAAACTATATATTATATA
1 TTTTAAAACTATATAATATATA
2032328 TATACTATAT
Statistics
Matches: 131, Mismatches: 12, Indels: 23
0.79 0.07 0.14
Matches are distributed among these distances:
29 36 0.27
30 7 0.05
31 1 0.01
32 1 0.01
33 7 0.05
34 7 0.05
35 2 0.02
36 27 0.21
37 33 0.25
38 10 0.08
ACGTcount: A:0.46, C:0.05, G:0.03, T:0.47
Consensus pattern (35 bp):
TTTTAAAACTATATAATATATAAGTTTTTAAAATG
Found at i:2032236 original size:29 final size:29
Alignment explanation
Indices: 2032199--2032283 Score: 143
Period size: 29 Copynumber: 2.9 Consensus size: 29
2032189 TATATATGTG
* *
2032199 TTTTAAAAATGTTTTAAAAATTATATATA
1 TTTTCAAAATGTTTTAAAAACTATATATA
*
2032228 TTTTCAAAATATTTTAAAAACTATATATA
1 TTTTCAAAATGTTTTAAAAACTATATATA
2032257 TTTTCAAAATGTTTTAAAAACTATATA
1 TTTTCAAAATGTTTTAAAAACTATATA
2032284 ATATATATAT
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 52 1.00
ACGTcount: A:0.47, C:0.05, G:0.02, T:0.46
Consensus pattern (29 bp):
TTTTCAAAATGTTTTAAAAACTATATATA
Found at i:2032255 original size:105 final size:103
Alignment explanation
Indices: 2032020--2032320 Score: 252
Period size: 106 Copynumber: 3.0 Consensus size: 103
2032010 AATATATATA
* * * * *
2032020 TAAAAAAATATTTTCCAAAAATCTATATAATAAAT-A-TTTTCAAAA-GTATTTTAAAATTATAT
1 TAAAAAATTATTTT--AAAAA-CTATATATTATATAAGTTTTTAAAATG-ATTTTAAAACTATAT
* * *
2032082 ATTATATATTTTTTTAAAAATGTTTTCAAAATTATATAGTTT
62 AATATATATTGTTTTAAAAATGTTTTAAAAATTATATAGTTT
* * *
2032124 TAAAAAATGTTTTTTTTAAAACTATATATTATATAAGTTTTTAAAATGATTTTAAACCTATATAA
1 TAAAAAA--TTATTTTAAAAACTATATATTATATAAGTTTTTAAAATGATTTTAAAACTATATAA
2032189 TATATATGTGTTTTAAAAATGTTTTAAAAATTATATA-TATT
64 TATATAT-TGTTTTAAAAATGTTTTAAAAATTATATAGT-TT
** *
2032230 TTCAAAA-TATTTTAAAAAC----TA-TATAT-A-TTTTCAAAATG-TTTTAAAAACTATATAAT
1 TAAAAAATTATTTTAAAAACTATATATTATATAAGTTTTTAAAATGATTTT-AAAACTATATAAT
* * * *
2032286 ATATATAT-TTTCAAAAATATTTTTAAAACTATATA
65 ATATAT-TGTTTTAAAAATGTTTTAAAAATTATATA
2032321 TTATATATAT
Statistics
Matches: 167, Mismatches: 22, Indels: 25
0.78 0.10 0.12
Matches are distributed among these distances:
95 27 0.16
96 29 0.17
97 1 0.01
98 5 0.03
99 2 0.01
103 21 0.13
104 12 0.07
105 30 0.18
106 40 0.24
ACGTcount: A:0.46, C:0.05, G:0.03, T:0.46
Consensus pattern (103 bp):
TAAAAAATTATTTTAAAAACTATATATTATATAAGTTTTTAAAATGATTTTAAAACTATATAATA
TATATTGTTTTAAAAATGTTTTAAAAATTATATAGTTT
Found at i:2032314 original size:37 final size:36
Alignment explanation
Indices: 2032249--2032330 Score: 128
Period size: 37 Copynumber: 2.2 Consensus size: 36
2032239 TTTTAAAAAC
*
2032249 TATATATATTTTCAAAATGTTTTAAAAACTATATAA
1 TATATATATTTTCAAAATATTTTAAAAACTATATAA
* *
2032285 TATATATATTTTCAAAAATATTTTTAAAACTATATAT
1 TATATATATTTTC-AAAATATTTTAAAAACTATATAA
2032322 TATATATAT
1 TATATATAT
2032331 ACTATATATA
Statistics
Matches: 42, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
36 13 0.31
37 29 0.69
ACGTcount: A:0.46, C:0.05, G:0.01, T:0.48
Consensus pattern (36 bp):
TATATATATTTTCAAAATATTTTAAAAACTATATAA
Found at i:2032366 original size:47 final size:48
Alignment explanation
Indices: 2032278--2032374 Score: 126
Period size: 47 Copynumber: 2.0 Consensus size: 48
2032268 TTTTAAAAAC
* * *
2032278 TATATAATATATATATTTTCAAAAATATTTTTAAAACTATATATTATA
1 TATATAATATATATACTTTCAAAAATAGTTTTAAAACTATATAATATA
* *
2032326 TATATACTATATATACTTT-AAAAAGT-GTTTTCAAACTATATAATATA
1 TATATAATATATATACTTTCAAAAA-TAGTTTTAAAACTATATAATATA
2032373 TA
1 TA
2032375 AAAAAAAGAC
Statistics
Matches: 43, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
47 25 0.58
48 18 0.42
ACGTcount: A:0.46, C:0.06, G:0.02, T:0.45
Consensus pattern (48 bp):
TATATAATATATATACTTTCAAAAATAGTTTTAAAACTATATAATATA
Found at i:2034087 original size:10 final size:9
Alignment explanation
Indices: 2034066--2034100 Score: 54
Period size: 9 Copynumber: 3.9 Consensus size: 9
2034056 AAAAGTTAGT
2034066 AAAA-AAAG
1 AAAATAAAG
2034074 AAAATAAAG
1 AAAATAAAG
2034083 AAAAATAAAG
1 -AAAATAAAG
2034093 AAAATAAA
1 AAAATAAA
2034101 ATGAATAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
8 4 0.16
9 12 0.48
10 9 0.36
ACGTcount: A:0.83, C:0.00, G:0.09, T:0.09
Consensus pattern (9 bp):
AAAATAAAG
Found at i:2034141 original size:5 final size:5
Alignment explanation
Indices: 2034131--2034174 Score: 52
Period size: 5 Copynumber: 8.2 Consensus size: 5
2034121 GGTTAATTAA
*
2034131 AAAAT AAAAT AAAAAT AAGAAT AAACTT AAAAT AAAAT AAAAT A
1 AAAAT AAAAT -AAAAT AA-AAT AAA-AT AAAAT AAAAT AAAAT A
2034175 TTTAAACTTA
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
5 20 0.59
6 14 0.41
ACGTcount: A:0.75, C:0.02, G:0.02, T:0.20
Consensus pattern (5 bp):
AAAAT
Found at i:2035312 original size:25 final size:27
Alignment explanation
Indices: 2035265--2035333 Score: 88
Period size: 26 Copynumber: 2.6 Consensus size: 27
2035255 ATAATATATA
2035265 TATATATATATATATTTTCTAAAAGT-T
1 TATATA-ATATATATTTTCTAAAAGTAT
2035292 TATATAATATATATTTT-TAAAAGTAT
1 TATATAATATATATTTTCTAAAAGTAT
* *
2035318 TTTAAAATTATATATT
1 TATATAA-TATATATT
2035334 ATATATTTTT
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
25 7 0.18
26 17 0.45
27 14 0.37
ACGTcount: A:0.43, C:0.01, G:0.03, T:0.52
Consensus pattern (27 bp):
TATATAATATATATTTTCTAAAAGTAT
Found at i:2035329 original size:34 final size:36
Alignment explanation
Indices: 2035276--2035367 Score: 125
Period size: 34 Copynumber: 2.5 Consensus size: 36
2035266 ATATATATAT
2035276 ATATTTTCTAAAAGTTTATATAATATATATTTTT-AAAA
1 ATATTTTC-AAAA--TTATATAATATATATTTTTAAAAA
* *
2035314 GTATTTT-AAAATTATATATTATATATTTTTAAAAA
1 ATATTTTCAAAATTATATAATATATATTTTTAAAAA
2035349 ATATTTTCAAAATTATATA
1 ATATTTTCAAAATTATATA
2035368 GTGTTGAGTT
Statistics
Matches: 49, Mismatches: 3, Indels: 6
0.84 0.05 0.10
Matches are distributed among these distances:
34 18 0.37
35 10 0.20
36 15 0.31
38 6 0.12
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.50
Consensus pattern (36 bp):
ATATTTTCAAAATTATATAATATATATTTTTAAAAA
Found at i:2036715 original size:17 final size:16
Alignment explanation
Indices: 2036677--2036724 Score: 53
Period size: 17 Copynumber: 3.0 Consensus size: 16
2036667 TTCAAACATC
* *
2036677 CAAACAAATCCAAAGT
1 CAAACAATTCCAAAAT
*
2036693 CTAACAATTCACAAAAT
1 CAAACAATTC-CAAAAT
2036710 CAAACAA-TCCAAAAT
1 CAAACAATTCCAAAAT
2036725 ATTCAAAATG
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
15 6 0.22
16 10 0.37
17 11 0.41
ACGTcount: A:0.56, C:0.25, G:0.02, T:0.17
Consensus pattern (16 bp):
CAAACAATTCCAAAAT
Found at i:2040163 original size:12 final size:12
Alignment explanation
Indices: 2040129--2040163 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
2040119 TATCATGTTC
**
2040129 TCATATCACAGG
1 TCATATCACATA
2040141 TCATATCACATA
1 TCATATCACATA
2040153 TCATATCACAT
1 TCATATCACAT
2040164 GAACATATAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.37, C:0.26, G:0.06, T:0.31
Consensus pattern (12 bp):
TCATATCACATA
Found at i:2040605 original size:64 final size:64
Alignment explanation
Indices: 2040536--2040673 Score: 183
Period size: 64 Copynumber: 2.2 Consensus size: 64
2040526 TATTGTTGGG
* *
2040536 ATGCATCGATGCACT-AATTGCATTCGATG-TTTCATTATT-AATGGGATGCATCGATGCACTAC
1 ATGCATCGATGCA-TGAATTGCATTCGATGCTTTCATT-TTAAAAGAG-TGCATCGATGCACTAC
*
2040598 TA
63 CA
* *
2040600 GTGCATCGATGCATGAATTGCATTCGATGCTTTTATTTTAAAAGAGTGCATCGATGCACTACCA
1 ATGCATCGATGCATGAATTGCATTCGATGCTTTCATTTTAAAAGAGTGCATCGATGCACTACCA
2040664 ATGCATCGAT
1 ATGCATCGAT
2040674 ACACCTTTAA
Statistics
Matches: 65, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
63 1 0.02
64 54 0.83
65 10 0.15
ACGTcount: A:0.28, C:0.19, G:0.20, T:0.33
Consensus pattern (64 bp):
ATGCATCGATGCATGAATTGCATTCGATGCTTTCATTTTAAAAGAGTGCATCGATGCACTACCA
Found at i:2051725 original size:21 final size:21
Alignment explanation
Indices: 2051700--2051739 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
2051690 AAACCATTCA
2051700 GGGGGAATCGATACCCTCTTG
1 GGGGGAATCGATACCCTCTTG
* *
2051721 GGGGGAATCGGTTCCCTCT
1 GGGGGAATCGATACCCTCT
2051740 GAGCAATCTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.15, C:0.25, G:0.35, T:0.25
Consensus pattern (21 bp):
GGGGGAATCGATACCCTCTTG
Found at i:2052068 original size:38 final size:38
Alignment explanation
Indices: 2051981--2052178 Score: 113
Period size: 38 Copynumber: 5.4 Consensus size: 38
2051971 AATGTTTTCA
* *
2051981 ACATAT-AGTTTTCAAAAAT-ATTTTTAAAACTATAT-A-
1 ACATATAAGTTTTC-AAAATGA-TTTAAAAATTATATAAT
* * *
2052017 CCATATAATTTTTCAAAATGATTTCAAAATTATATAAT
1 ACATATAAGTTTTCAAAATGATTTAAAAATTATATAAT
*
2052055 ACATATAAGTTTTCAAAATG-TTT-----TT-T-TAAA
1 ACATATAAGTTTTCAAAATGATTTAAAAATTATATAAT
* *
2052085 ACTATATATA-TTTTCAAAATGTTTTAAAAAATATAT-AT
1 AC-ATATA-AGTTTTCAAAATGATTTAAAAATTATATAAT
* * *
2052123 ATTATATTTA-TTTTCAAAATGTTTTAAAAATTATATAAT
1 A-CATA-TAAGTTTTCAAAATGATTTAAAAATTATATAAT
*
2052162 ATATA-AATGTTTTCAAA
1 ACATATAA-GTTTTCAAA
2052179 CATATTTTCA
Statistics
Matches: 130, Mismatches: 13, Indels: 36
0.73 0.07 0.20
Matches are distributed among these distances:
30 5 0.04
31 17 0.13
32 6 0.05
36 23 0.18
37 12 0.09
38 62 0.48
39 5 0.04
ACGTcount: A:0.45, C:0.07, G:0.04, T:0.45
Consensus pattern (38 bp):
ACATATAAGTTTTCAAAATGATTTAAAAATTATATAAT
Found at i:2052114 original size:29 final size:30
Alignment explanation
Indices: 2052064--2052125 Score: 90
Period size: 29 Copynumber: 2.1 Consensus size: 30
2052054 TACATATAAG
* *
2052064 TTTTCAAAATGTTTTTTTAAAACTATATATA
1 TTTTCAAAATG-TTTTTAAAAAATATATATA
2052095 TTTTCAAAATG-TTTTAAAAAATATATATA
1 TTTTCAAAATGTTTTTAAAAAATATATATA
2052124 TT
1 TT
2052126 ATATTTATTT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
29 18 0.62
31 11 0.38
ACGTcount: A:0.42, C:0.05, G:0.03, T:0.50
Consensus pattern (30 bp):
TTTTCAAAATGTTTTTAAAAAATATATATA
Found at i:2052158 original size:36 final size:38
Alignment explanation
Indices: 2052087--2052211 Score: 146
Period size: 38 Copynumber: 3.2 Consensus size: 38
2052077 TTTTTAAAAC
*
2052087 TATATATATTTTCAAAATGTTTTAAAAAATATATATAT
1 TATATATATTTTCAAAATGTTTTAAAAAATATATATAA
*
2052125 TATATTTATTTTCAAAATGTTTT-AAAAAT-TATATAA
1 TATATATATTTTCAAAATGTTTTAAAAAATATATATAA
* * * *
2052161 TATATAAATGTTTTCAAACATATTTTCAAATATATATATATA
1 TATAT--ATATTTTCAAA-ATGTTTTAAAAAATATATATA-A
2052203 TATATATAT
1 TATATATAT
2052212 ATATATATAT
Statistics
Matches: 74, Mismatches: 7, Indels: 10
0.81 0.08 0.11
Matches are distributed among these distances:
36 11 0.15
37 6 0.08
38 31 0.42
39 6 0.08
40 8 0.11
41 6 0.08
42 6 0.08
ACGTcount: A:0.46, C:0.04, G:0.02, T:0.48
Consensus pattern (38 bp):
TATATATATTTTCAAAATGTTTTAAAAAATATATATAA
Found at i:2052197 original size:2 final size:2
Alignment explanation
Indices: 2052190--2052223 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
2052180 ATATTTTCAA
2052190 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
2052224 TTTTAAATGT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:2053836 original size:33 final size:32
Alignment explanation
Indices: 2053794--2053861 Score: 75
Period size: 32 Copynumber: 2.1 Consensus size: 32
2053784 AAATTGTCCT
* * * *
2053794 TATTATATATTTGTTTTTTTAACAATTTGGAAAA
1 TATTATATATAT-TTTCTTTAAAAAATT-GAAAA
2053828 TATT-TATATATTTTCTTTAAAAAATTGAAAA
1 TATTATATATATTTTCTTTAAAAAATTGAAAA
2053859 TAT
1 TAT
2053862 AAAAAGGTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
31 8 0.27
32 12 0.40
33 6 0.20
34 4 0.13
ACGTcount: A:0.40, C:0.03, G:0.06, T:0.51
Consensus pattern (32 bp):
TATTATATATATTTTCTTTAAAAAATTGAAAA
Found at i:2054521 original size:25 final size:24
Alignment explanation
Indices: 2054474--2054521 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
2054464 ATTTATATAC
* *
2054474 TTTTTAATAAAATTTATATATAAT
1 TTTTTAATAAAATTTAAAGATAAT
*
2054498 TTTTTTATAAAATTTAAAAGATAA
1 TTTTTAATAAAATTT-AAAGATAA
2054522 ATGGGTAGAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 14 0.70
25 6 0.30
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (24 bp):
TTTTTAATAAAATTTAAAGATAAT
Found at i:2058776 original size:2 final size:2
Alignment explanation
Indices: 2058769--2058804 Score: 54
Period size: 2 Copynumber: 18.0 Consensus size: 2
2058759 ATTTTATTAT
* *
2058769 TA TA TA TA TA TA TA TA TA TA TG TA TG TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
2058805 GTAATACAGT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.44, C:0.00, G:0.06, T:0.50
Consensus pattern (2 bp):
TA
Found at i:2059001 original size:36 final size:36
Alignment explanation
Indices: 2058857--2059279 Score: 337
Period size: 36 Copynumber: 11.8 Consensus size: 36
2058847 AATTTTCGGA
* *
2058857 AAAACGATTTTCGAAAATAAGTATATATTATATATTTTTT
1 AAAAC-ATTTT-GAAAAT-A-TATATAATATATAGTTTTT
* * * * * *
2058897 GAAAACGTTTTTAAAATCTATATAGTATATGGTTTTG
1 -AAAACATTTTGAAAATATATATAATATATAGTTTTT
* * *
2058934 AAAATTATTTTGAAAACATTTATATATTATATAGTTTTT
1 AAAA-CATTTTG-AAA-ATATATATAATATATAGTTTTT
2058973 AAAACATTTTGAAAATATATATAATATATAGTTTTT
1 AAAACATTTTGAAAATATATATAATATATAGTTTTT
2059009 AAAACATTTTGAAAATATATATAATATATAGTTTTT
1 AAAACATTTTGAAAATATATATAATATATAGTTTTT
*
2059045 AAAACATTTT-AAAA-ACATAT-AT-TATA-----T
1 AAAACATTTTGAAAATATATATAATATATAGTTTTT
* *
2059072 AAAACATTTTTGAAAACATTTATATATTATATAGTTTTT
1 AAAACA-TTTTG-AAA-ATATATATAATATATAGTTTTT
*
2059111 AAAACATTTTGAAAGTATATATAATATATAGTTTTT
1 AAAACATTTTGAAAATATATATAATATATAGTTTTT
*
2059147 AAAACATTTT-AAAA-ACATAT-AT-TATA-----T
1 AAAACATTTTGAAAATATATATAATATATAGTTTTT
*
2059174 AAAACATTTTTTGAAAACTTATATATAATATATAATTTTTT
1 AAAACA--TTTTGAAAA--TATATATAATATAT-AGTTTTT
* *
2059215 AAAAACATTTTTGAAAA-GTATATAATATATA-ATTTT
1 -AAAACA-TTTTGAAAATATATATAATATATAGTTTTT
* * *
2059251 AAAATATTTTTGAAATTATATATTATATA
1 AAAACA-TTTTGAAAATATATATAATATA
2059280 GGTTTTGGAA
Statistics
Matches: 318, Mismatches: 33, Indels: 67
0.76 0.08 0.16
Matches are distributed among these distances:
27 14 0.04
28 4 0.01
29 4 0.01
30 7 0.02
31 1 0.00
32 12 0.04
33 10 0.03
34 16 0.05
35 24 0.08
36 114 0.36
37 26 0.08
38 26 0.08
39 34 0.11
40 4 0.01
41 16 0.05
42 6 0.02
ACGTcount: A:0.45, C:0.04, G:0.06, T:0.45
Consensus pattern (36 bp):
AAAACATTTTGAAAATATATATAATATATAGTTTTT
Found at i:2059074 original size:27 final size:27
Alignment explanation
Indices: 2059044--2059098 Score: 76
Period size: 28 Copynumber: 2.0 Consensus size: 27
2059034 ATATAGTTTT
2059044 TAAAACA-TTTTAAAAACATATATTATA
1 TAAAACATTTTTAAAAACATATA-TATA
* *
2059071 TAAAACATTTTTGAAAACATTTATATA
1 TAAAACATTTTTAAAAACATATATATA
2059098 T
1 T
2059099 TATATAGTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 12 0.48
28 13 0.52
ACGTcount: A:0.51, C:0.07, G:0.02, T:0.40
Consensus pattern (27 bp):
TAAAACATTTTTAAAAACATATATATA
Found at i:2059109 original size:66 final size:63
Alignment explanation
Indices: 2059008--2059138 Score: 181
Period size: 66 Copynumber: 2.0 Consensus size: 63
2058998 ATATAGTTTT
*
2059008 TAAAACATTTTGAAAATATATATAATATATAGTTTTTAAAACATTTTAAAAACATATATTATA
1 TAAAACATTTTGAAAATATATATAATATATAGTTTTTAAAACATTTTAAAAACATATATAATA
* * * **
2059071 TAAAACATTTTTGAAAACATTTATATATTATATAGTTTTTAAAACATTTTGAAAGTATATATAAT
1 TAAAACA-TTTTG-AAA-ATATATATAATATATAGTTTTTAAAACATTTTAAAAACATATATAAT
2059136 A
63 A
2059137 TA
1 TA
2059139 TAGTTTTTAA
Statistics
Matches: 59, Mismatches: 6, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
63 7 0.12
64 5 0.08
65 3 0.05
66 44 0.75
ACGTcount: A:0.48, C:0.05, G:0.05, T:0.43
Consensus pattern (63 bp):
TAAAACATTTTGAAAATATATATAATATATAGTTTTTAAAACATTTTAAAAACATATATAATA
Found at i:2059112 original size:102 final size:102
Alignment explanation
Indices: 2058972--2059279 Score: 430
Period size: 102 Copynumber: 3.0 Consensus size: 102
2058962 ATATAGTTTT
*
2058972 TAAAACA-TTTTG-AAA-ATATATATAATATATAGTTTTTAAAACATTTTGAAAATATATATAAT
1 TAAAACATTTTTGAAAACATTTATATAATATATAGTTTTTAAAACATTTTGAAAATATATATAAT
2059034 ATATAGTTTTTAAAACATTTTAAAAACATATATTATA
66 ATATAGTTTTTAAAACATTTTAAAAACATATATTATA
* *
2059071 TAAAACATTTTTGAAAACATTTATATATTATATAGTTTTTAAAACATTTTGAAAGTATATATAAT
1 TAAAACATTTTTGAAAACATTTATATAATATATAGTTTTTAAAACATTTTGAAAATATATATAAT
2059136 ATATAGTTTTTAAAACATTTTAAAAACATATATTATA
66 ATATAGTTTTTAAAACATTTTAAAAACATATATTATA
* *
2059173 TAAAACATTTTTTGAAAAC-TTATATATAATATATAATTTTTTAAAAACATTTTTGAAAA-GTAT
1 TAAAACA-TTTTTGAAAACATT-TATATAATATAT-AGTTTTT-AAAACA-TTTTGAAAATATAT
* * * **
2059236 ATAATATATA-ATTTTAAAATATTTTTGAAATTATATATTATA
61 ATAATATATAGTTTTTAAAACA-TTTTAAAAACATATATTATA
2059278 TA
1 TA
2059280 GGTTTTGGAA
Statistics
Matches: 188, Mismatches: 12, Indels: 12
0.89 0.06 0.06
Matches are distributed among these distances:
99 7 0.04
100 5 0.03
101 3 0.02
102 90 0.48
103 22 0.12
104 15 0.08
105 38 0.20
106 8 0.04
ACGTcount: A:0.47, C:0.04, G:0.04, T:0.44
Consensus pattern (102 bp):
TAAAACATTTTTGAAAACATTTATATAATATATAGTTTTTAAAACATTTTGAAAATATATATAAT
ATATAGTTTTTAAAACATTTTAAAAACATATATTATA
Found at i:2059185 original size:29 final size:29
Alignment explanation
Indices: 2059146--2059222 Score: 81
Period size: 29 Copynumber: 2.7 Consensus size: 29
2059136 ATATAGTTTT
2059146 TAAAACA--TTTTAAAAACATATAT-TATA
1 TAAAACATTTTTTAAAAACATATATATA-A
* *
2059173 TAAAACATTTTTTGAAAACTTATATATAA
1 TAAAACATTTTTTAAAAACATATATATAA
*
2059202 TATATA-ATTTTTTAAAAACAT
1 TA-AAACATTTTTTAAAAACAT
2059223 TTTTGAAAAG
Statistics
Matches: 41, Mismatches: 5, Indels: 6
0.79 0.10 0.12
Matches are distributed among these distances:
27 7 0.17
29 30 0.73
30 4 0.10
ACGTcount: A:0.51, C:0.06, G:0.01, T:0.42
Consensus pattern (29 bp):
TAAAACATTTTTTAAAAACATATATATAA
Found at i:2059225 original size:42 final size:38
Alignment explanation
Indices: 2059174--2059279 Score: 112
Period size: 34 Copynumber: 2.8 Consensus size: 38
2059164 TATATTATAT
2059174 AAAACATTTTTTGAAAACTTATATATAATATATAATTTTTTA
1 AAAACA-TTTTTGAAAA---ATATATAATATATAATTTTTTA
*
2059216 AAAACATTTTTGAAAAGTATATAATATATAA--TTTT-
1 AAAACATTTTTGAAAAATATATAATATATAATTTTTTA
* * *
2059251 AAAATATTTTTG-AAATTATATATTATATA
1 AAAACATTTTTGAAAAATATATAATATATA
2059280 GGTTTTGGAA
Statistics
Matches: 60, Mismatches: 4, Indels: 8
0.83 0.06 0.11
Matches are distributed among these distances:
34 15 0.25
35 11 0.18
36 4 0.07
38 14 0.23
41 10 0.17
42 6 0.10
ACGTcount: A:0.47, C:0.03, G:0.04, T:0.46
Consensus pattern (38 bp):
AAAACATTTTTGAAAAATATATAATATATAATTTTTTA
Found at i:2060624 original size:16 final size:15
Alignment explanation
Indices: 2060599--2060657 Score: 73
Period size: 16 Copynumber: 3.7 Consensus size: 15
2060589 AATTTGATCC
2060599 TTTTTTATTTTTATT
1 TTTTTTATTTTTATT
2060614 TTTTTTCATTTTTCATT
1 TTTTTT-ATTTTT-ATT
*
2060631 TTTCATTATTTTTATT
1 TTT-TTTATTTTTATT
2060647 TTATTTTATTT
1 TT-TTTTATTT
2060658 CACATTATTT
Statistics
Matches: 38, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
15 6 0.16
16 17 0.45
17 13 0.34
18 2 0.05
ACGTcount: A:0.15, C:0.05, G:0.00, T:0.80
Consensus pattern (15 bp):
TTTTTTATTTTTATT
Found at i:2060657 original size:26 final size:27
Alignment explanation
Indices: 2060609--2060668 Score: 70
Period size: 26 Copynumber: 2.3 Consensus size: 27
2060599 TTTTTTATTT
**
2060609 TTATTTTTTTTCATTTTTCATTTTTCA
1 TTATTTTTTTTCATTTTTCATTTCACA
*
2060636 TTATTTTTATTTTA-TTTT-ATTTCACA
1 TTATTTTT-TTTCATTTTTCATTTCACA
2060662 TTATTTT
1 TTATTTT
2060669 ACTATTTTTA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
26 13 0.45
27 12 0.41
28 4 0.14
ACGTcount: A:0.18, C:0.08, G:0.00, T:0.73
Consensus pattern (27 bp):
TTATTTTTTTTCATTTTTCATTTCACA
Found at i:2064647 original size:17 final size:16
Alignment explanation
Indices: 2064625--2064672 Score: 69
Period size: 16 Copynumber: 2.9 Consensus size: 16
2064615 ATATTTTGTT
2064625 TTTAATTTATTTAAGTA
1 TTTAATTTATTTAA-TA
2064642 TTTAATTTATTTAATA
1 TTTAATTTATTTAATA
* *
2064658 TTTTATTTAATTAAT
1 TTTAATTTATTTAAT
2064673 TTTTTGTAGA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
16 15 0.52
17 14 0.48
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.62
Consensus pattern (16 bp):
TTTAATTTATTTAATA
Found at i:2074061 original size:13 final size:13
Alignment explanation
Indices: 2074043--2074067 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2074033 ATTACAAAAT
2074043 AATATTTTTATTA
1 AATATTTTTATTA
2074056 AATATTTTTATT
1 AATATTTTTATT
2074068 TGACAATTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (13 bp):
AATATTTTTATTA
Found at i:2090209 original size:18 final size:19
Alignment explanation
Indices: 2090174--2090210 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
2090164 CACGGAATGT
2090174 AAGATTACCAGTGGGAATAA
1 AAGATTACCAG-GGGAATAA
2090194 AAGATTACCA-GGGAATA
1 AAGATTACCAGGGGAATA
2090211 GGATTACTGG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 7 0.41
20 10 0.59
ACGTcount: A:0.46, C:0.11, G:0.24, T:0.19
Consensus pattern (19 bp):
AAGATTACCAGGGGAATAA
Found at i:2094222 original size:16 final size:16
Alignment explanation
Indices: 2094186--2094216 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
2094176 AATGCAGACC
2094186 ATTTTTCTTTAAAATG
1 ATTTTTCTTTAAAATG
2094202 ATTTTTCTTTAAAAT
1 ATTTTTCTTTAAAAT
2094217 TGTTTTAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.32, C:0.06, G:0.03, T:0.58
Consensus pattern (16 bp):
ATTTTTCTTTAAAATG
Found at i:2095311 original size:31 final size:32
Alignment explanation
Indices: 2095276--2095337 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
2095266 ATTTTACATG
2095276 TACTAACTTATTT-TTCTCTTTTGTTTGTGTA
1 TACTAACTTATTTCTTCTCTTTTGTTTGTGTA
2095307 TACTAACTTATTTCTTCTCTTTTGTTTGTGT
1 TACTAACTTATTTCTTCTCTTTTGTTTGTGT
2095338 CATTTTGTCA
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
31 13 0.43
32 17 0.57
ACGTcount: A:0.15, C:0.15, G:0.10, T:0.61
Consensus pattern (32 bp):
TACTAACTTATTTCTTCTCTTTTGTTTGTGTA
Found at i:2097798 original size:26 final size:25
Alignment explanation
Indices: 2097769--2097847 Score: 78
Period size: 26 Copynumber: 3.3 Consensus size: 25
2097759 AATTTTTGAC
2097769 ATTCTATTTCTTTGAGACCTTGAAAT
1 ATTCT-TTTCTTTGAGACCTTGAAAT
*
2097795 ATTCTTTTC-----GACCTTGAAAC
1 ATTCTTTTCTTTGAGACCTTGAAAT
* *
2097815 ATTCCCTCTCTTTGAGACCTTGAAAT
1 ATT-CTTTTCTTTGAGACCTTGAAAT
2097841 ATTCTTT
1 ATTCTTT
2097848 CTACCTTGAA
Statistics
Matches: 41, Mismatches: 6, Indels: 13
0.68 0.10 0.22
Matches are distributed among these distances:
20 13 0.32
21 4 0.10
25 6 0.15
26 18 0.44
ACGTcount: A:0.24, C:0.22, G:0.10, T:0.44
Consensus pattern (25 bp):
ATTCTTTTCTTTGAGACCTTGAAAT
Found at i:2097801 original size:20 final size:20
Alignment explanation
Indices: 2097776--2097847 Score: 63
Period size: 20 Copynumber: 3.3 Consensus size: 20
2097766 GACATTCTAT
2097776 TTCTTTGAGACCTTGAAATA
1 TTCTTTGAGACCTTGAAATA
** *
2097796 TTCTTTTCGACCTTGAAACATTCCC
1 TTCTTTGAGACCTTG-AA-A-T--A
2097821 TCTCTTTGAGACCTTGAAATA
1 T-TCTTTGAGACCTTGAAATA
2097842 TTCTTT
1 TTCTTT
2097848 CTACCTTGAA
Statistics
Matches: 40, Mismatches: 6, Indels: 12
0.69 0.10 0.21
Matches are distributed among these distances:
20 18 0.45
21 3 0.08
22 1 0.03
23 2 0.05
24 1 0.03
25 3 0.08
26 12 0.30
ACGTcount: A:0.24, C:0.22, G:0.11, T:0.43
Consensus pattern (20 bp):
TTCTTTGAGACCTTGAAATA
Found at i:2098475 original size:20 final size:20
Alignment explanation
Indices: 2098450--2098487 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
2098440 AAGATCAAAC
2098450 CAAAGAAAAAAAACAAAGAG
1 CAAAGAAAAAAAACAAAGAG
* *
2098470 CAAAGAGAAAAATCAAAG
1 CAAAGAAAAAAAACAAAG
2098488 CAAAAATCAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.71, C:0.11, G:0.16, T:0.03
Consensus pattern (20 bp):
CAAAGAAAAAAAACAAAGAG
Found at i:2098486 original size:13 final size:12
Alignment explanation
Indices: 2098470--2098517 Score: 53
Period size: 12 Copynumber: 3.9 Consensus size: 12
2098460 AAACAAAGAG
2098470 CAAAGAGAAAAAT
1 CAAAGA-AAAAAT
*
2098483 CAAAGCAAAAAT
1 CAAAGAAAAAAT
*
2098495 CAAAG-AAAAAG
1 CAAAGAAAAAAT
2098506 CAAAGAACAAAA
1 CAAAGAA-AAAA
2098518 GAGGACAAAG
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
11 10 0.32
12 12 0.39
13 9 0.29
ACGTcount: A:0.71, C:0.12, G:0.12, T:0.04
Consensus pattern (12 bp):
CAAAGAAAAAAT
Found at i:2098503 original size:11 final size:11
Alignment explanation
Indices: 2098475--2098512 Score: 58
Period size: 11 Copynumber: 3.4 Consensus size: 11
2098465 AAGAGCAAAG
2098475 AGAAAAATCAA
1 AGAAAAATCAA
2098486 AGCAAAAATCAA
1 AG-AAAAATCAA
*
2098498 AGAAAAAGCAA
1 AGAAAAATCAA
2098509 AGAA
1 AGAA
2098513 CAAAAGAGGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
11 14 0.56
12 11 0.44
ACGTcount: A:0.71, C:0.11, G:0.13, T:0.05
Consensus pattern (11 bp):
AGAAAAATCAA
Found at i:2100331 original size:36 final size:36
Alignment explanation
Indices: 2100279--2100396 Score: 159
Period size: 36 Copynumber: 3.3 Consensus size: 36
2100269 TGAGAATTTT
*
2100279 AAAACAAATTTTTGTCTCGCTTGAGACAATTTCTTTC
1 AAAACAAA-TTTTGTCTCGCTTGAGACAATTTCTTTA
* *
2100316 AAAGCAAATTTTGTCTCGCTTGAGACAGCTTTC--TA
1 AAAACAAATTTTGTCTCGCTTGAGACA-ATTTCTTTA
* *
2100351 AAAACAAATTTTGTCTCGTTTGAGACAATTTCTTGA
1 AAAACAAATTTTGTCTCGCTTGAGACAATTTCTTTA
2100387 AAAACAAATT
1 AAAACAAATT
2100397 CCGTCTCACT
Statistics
Matches: 71, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
34 4 0.06
35 26 0.37
36 30 0.42
37 11 0.15
ACGTcount: A:0.34, C:0.17, G:0.13, T:0.36
Consensus pattern (36 bp):
AAAACAAATTTTGTCTCGCTTGAGACAATTTCTTTA
Found at i:2100403 original size:71 final size:72
Alignment explanation
Indices: 2100279--2100413 Score: 191
Period size: 71 Copynumber: 1.9 Consensus size: 72
2100269 TGAGAATTTT
** * ** * *
2100279 AAAACAAATTTTTGTCTCGCTTGAGACAATTTCTTTCAAAGCAAATTTTGTCTCGCTTGAGACAG
1 AAAACAAATTTTTGTCTCGCTTGAGACAATTTCTTGAAAAACAAATTCCGTCTCACTGGAGACAG
2100344 CTTTCTA
66 CTTTCTA
*
2100351 AAAACAAA-TTTTGTCTCGTTTGAGACAATTTCTTGAAAAACAAATTCCGTCTCACTGGAGACA
1 AAAACAAATTTTTGTCTCGCTTGAGACAATTTCTTGAAAAACAAATTCCGTCTCACTGGAGACA
2100414 TTTTTCCTTG
Statistics
Matches: 55, Mismatches: 8, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
71 47 0.85
72 8 0.15
ACGTcount: A:0.33, C:0.19, G:0.14, T:0.34
Consensus pattern (72 bp):
AAAACAAATTTTTGTCTCGCTTGAGACAATTTCTTGAAAAACAAATTCCGTCTCACTGGAGACAG
CTTTCTA
Found at i:2100580 original size:36 final size:36
Alignment explanation
Indices: 2100499--2100580 Score: 94
Period size: 36 Copynumber: 2.3 Consensus size: 36
2100489 ATTTTGTTTT
* * *
2100499 GCTTGAGACAATTTCTTTAAAAACAAAGTTTGTATC
1 GCTTGAGACAAATTCTTTAAAAACAAACTTCGTATC
* * *
2100535 ACTTAAGACAAATTCTCTT-AAAACAAACTTCGTCTC
1 GCTTGAGACAAATTCT-TTAAAAACAAACTTCGTATC
2100571 GCTTGAGACA
1 GCTTGAGACA
2100581 TTTTTCCTTT
Statistics
Matches: 37, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
36 35 0.95
37 2 0.05
ACGTcount: A:0.37, C:0.20, G:0.12, T:0.32
Consensus pattern (36 bp):
GCTTGAGACAAATTCTTTAAAAACAAACTTCGTATC
Found at i:2100638 original size:168 final size:165
Alignment explanation
Indices: 2100320--2100638 Score: 405
Period size: 167 Copynumber: 1.9 Consensus size: 165
2100310 TCTTTCAAAG
* * * ** *
2100320 CAAATTTTGTCTCGCTTGAGACAGCTTTCTAAAAACAAATTTTGTCTCGTTTGAGACAATTTCTT
1 CAAATTTTGTCTCGCTTGAGACAGATTTCTAAAAACAAAGTTTGTATCACTTAAGACAATTTCTT
*
2100385 GAAAAACAAATTCCGTCTCACTGGAGACATTTTTCCTTGAGATACAAATTTCGAATTTGATTCGC
66 -AAAAACAAATTCCGTCTCACTGGAGACATTTTTCCTTGAGATACAAATTTCGAATTTGATTCAC
*
2100450 ATTAAACAAAGTTGATCTCACTTGAGATCGTTTTCT
130 ATTAAACAAAGTTAATCTCACTTGAGATCGTTTTCT
* *
2100486 CAAATTTTGTTTTGCTTGAGACA-ATTTCTTTAAAAACAAAGTTTGTATCACTTAAGACAAATTC
1 CAAATTTTGTCTCGCTTGAGACAGATTTC--TAAAAACAAAGTTTGTATCACTTAAGAC-AATT-
* * *
2100550 TCTT-AAAACAAACTT-CGTCTCGCTTGAGACATTTTTCCTTTGAGATACAAATTTTGAATTTGA
62 TCTTAAAAACAAA-TTCCGTCTCACTGGAGACATTTTTCC-TTGAGATACAAATTTCGAATTTGA
2100613 TTCAC-TTAAA-ACAAGATTAATCTCAC
125 TTCACATTAAACA-AAG-TTAATCTCAC
2100639 CTTAGATTGT
Statistics
Matches: 132, Mismatches: 13, Indels: 14
0.83 0.08 0.09
Matches are distributed among these distances:
165 4 0.03
166 22 0.17
167 60 0.45
168 42 0.32
169 4 0.03
ACGTcount: A:0.32, C:0.18, G:0.13, T:0.37
Consensus pattern (165 bp):
CAAATTTTGTCTCGCTTGAGACAGATTTCTAAAAACAAAGTTTGTATCACTTAAGACAATTTCTT
AAAAACAAATTCCGTCTCACTGGAGACATTTTTCCTTGAGATACAAATTTCGAATTTGATTCACA
TTAAACAAAGTTAATCTCACTTGAGATCGTTTTCT
Found at i:2100678 original size:105 final size:102
Alignment explanation
Indices: 2100554--2100792 Score: 290
Period size: 105 Copynumber: 2.3 Consensus size: 102
2100544 AAATTCTCTT
* * *
2100554 AAAACAAACTTCGTCTCGCTTGAGACATTTTTCCTTTGAGATACAAATTTTGAATTTGATTCAC-
1 AAAACAAATTTCGTCTCGCTTGAGACATTTTCCCTTTGAGATACAAATTTCGAATTTGATTCACA
*
2100618 TTAAA-ACAAGATTAATCTCACCTT-AGATTGTTGTTTCTTTC-
66 TTAAACA-AAG-TTAATCTCA-CTTGAGATCG-T-TTTC--TCA
* * *
2100659 AAAACAAATTTCGTCTCGCTTGAGACCTTTTCCCTTTGAGATCCAAATTTCGAATTTGTTTCACA
1 AAAACAAATTTCGTCTCGCTTGAGACATTTTCCCTTTGAGATACAAATTTCGAATTTGATTCACA
*
2100724 TTAAACAAAGTTGATCTCACTTGAGATCGTTTTCTCA
66 TTAAACAAAGTTAATCTCACTTGAGATCGTTTTCTCA
*
2100761 AAAACAAACTTT-GTCTCGCTTGAGACAATTTC
1 AAAACAAA-TTTCGTCTCGCTTGAGACATTTTC
2100793 TCTAAAAACA
Statistics
Matches: 119, Mismatches: 10, Indels: 13
0.84 0.07 0.09
Matches are distributed among these distances:
101 2 0.02
102 26 0.22
103 7 0.06
104 4 0.03
105 71 0.60
106 8 0.07
107 1 0.01
ACGTcount: A:0.30, C:0.20, G:0.12, T:0.38
Consensus pattern (102 bp):
AAAACAAATTTCGTCTCGCTTGAGACATTTTCCCTTTGAGATACAAATTTCGAATTTGATTCACA
TTAAACAAAGTTAATCTCACTTGAGATCGTTTTCTCA
Found at i:2100730 original size:273 final size:267
Alignment explanation
Indices: 2100387--2101019 Score: 801
Period size: 273 Copynumber: 2.3 Consensus size: 267
2100377 AATTTCTTGA
* * * * *
2100387 AAAACAAATTCCGTCTCACTGGAGACATTTTTCC-TTGAGATACAAATTTCGAATTTGATTCGCA
1 AAAACAAATTTCGTCTCGCTTGAGACA-TTTTCCTTTGAGATACAAATTTCGAATTTGTTTCACA
* * *
2100451 TTAAACAAAGTTGATCTCACTTGAGATCGTTTTCT-CAAATTTTGTTTTGCTTGAGACAATTTCT
65 TTAAACAAAGTTGATCTCACTTGAGATCGTTTTCTACAAACTTTGTCTCGCTTGAGACAATTTCT
* *
2100515 TTAAAAACAAAGTTTGTATCACTTAAGACAAATTCTCTTAAAACAAACTTCGTCTCGCTTGAGAC
130 CTAAAAACAAAGTTTGTATCACTTAAGAC-AA-TATCTTAAAACAAACTTCGTCTCGCTTGAGAC
2100580 ATTTTTCCTTTGAGATACAAATTTTGAATTTGATTCACTTAAAACAAGATTAATCTCACCTT-AG
193 ATTTTTCCTTTGAGATACAAATTTTGAATTTGATTCACTTAAAAC-A-A--AATCTCA-CTTGAG
*
2100644 ATTGTTGTTTCTTTC
253 ATTGTTGTTTATTTC
* *
2100659 AAAACAAATTTCGTCTCGCTTGAGACCTTTTCCCTTTGAGATCCAAATTTCGAATTTGTTTCACA
1 AAAACAAATTTCGTCTCGCTTGAGACATTTT-CCTTTGAGATACAAATTTCGAATTTGTTTCACA
2100724 TTAAACAAAGTTGATCTCACTTGAGATCGTTTTCTCAAAAACAAACTTTGTCTCGCTTGAGACAA
65 TTAAACAAAGTTGATCTCACTTGAGATCGTTTTCT-----ACAAACTTTGTCTCGCTTGAGACAA
* * * * * * *
2100789 TTTCTCTAAAAACAAATTTTGTCTCATTTGAGACTATATCTTAAAGCAAATTTCGTCTCGCTTGA
125 TTTCTCTAAAAACAAAGTTTGTATCACTTAAGACAATATCTTAAAACAAACTTCGTCTCGCTTGA
* * *
2100854 GACATTTTTCCTTTGAGATACTAATTTTGAATTTGTTTCACTTAAAACAAAATCTCACTTGATAT
190 GACATTTTTCCTTTGAGATACAAATTTTGAATTTGATTCACTTAAAACAAAATCTCACTTGAGAT
2100919 TGTTGTTTATTTC
255 TGTTGTTTATTTC
* * * * *
2100932 GAAACAAATTTCGTTTCGCTTGAGACATTTTTCTCTGAGATACAAATTT-AAATTTGTTGT-AC-
1 AAAACAAATTTCGTCTCGCTTGAGACATTTTCCTTTGAGATACAAATTTCGAATTTGTT-TCACA
* * *
2100994 TTGAAACAAAATTAATATCACTTGAG
65 TT-AAACAAAGTTGATCTCACTTGAG
2101020 TTTTTCAAAA
Statistics
Matches: 317, Mismatches: 33, Indels: 23
0.85 0.09 0.06
Matches are distributed among these distances:
270 2 0.01
271 34 0.11
272 44 0.14
273 112 0.35
275 1 0.00
276 1 0.00
277 72 0.23
278 1 0.00
279 50 0.16
ACGTcount: A:0.31, C:0.18, G:0.12, T:0.39
Consensus pattern (267 bp):
AAAACAAATTTCGTCTCGCTTGAGACATTTTCCTTTGAGATACAAATTTCGAATTTGTTTCACAT
TAAACAAAGTTGATCTCACTTGAGATCGTTTTCTACAAACTTTGTCTCGCTTGAGACAATTTCTC
TAAAAACAAAGTTTGTATCACTTAAGACAATATCTTAAAACAAACTTCGTCTCGCTTGAGACATT
TTTCCTTTGAGATACAAATTTTGAATTTGATTCACTTAAAACAAAATCTCACTTGAGATTGTTGT
TTATTTC
Found at i:2100783 original size:36 final size:36
Alignment explanation
Indices: 2100738--2100857 Score: 113
Period size: 36 Copynumber: 3.4 Consensus size: 36
2100728 ACAAAGTTGA
**
2100738 TCTCACTTGAGATCGTTTTCTC-AAAAACAAACTTTG
1 TCTCACTTGAGA-CAATTTCTCTAAAAACAAACTTTG
* *
2100774 TCTCGCTTGAGACAATTTCTCTAAAAACAAATTTTG
1 TCTCACTTGAGACAATTTCTCTAAAAACAAACTTTG
* * * *
2100810 TCTCATTTGAGACTATATCT-T-AAAGCAAA-TTTCG
1 TCTCACTTGAGACAATTTCTCTAAAAACAAACTTT-G
*
2100844 TCTCGCTTGAGACA
1 TCTCACTTGAGACA
2100858 TTTTTCCTTT
Statistics
Matches: 70, Mismatches: 12, Indels: 6
0.80 0.14 0.07
Matches are distributed among these distances:
33 3 0.04
34 19 0.27
35 8 0.11
36 40 0.57
ACGTcount: A:0.31, C:0.21, G:0.12, T:0.36
Consensus pattern (36 bp):
TCTCACTTGAGACAATTTCTCTAAAAACAAACTTTG
Found at i:2101205 original size:29 final size:29
Alignment explanation
Indices: 2101171--2101269 Score: 148
Period size: 29 Copynumber: 3.5 Consensus size: 29
2101161 CTCTTGAGAT
2101171 AAATCTTTGAGTCTGTTCCTTTTGAATAA
1 AAATCTTTGAGTCTGTTCCTTTTGAATAA
* *
2101200 AAATCTTGGAGTTTGTTCCTTTTGAATAA
1 AAATCTTTGAGTCTGTTCCTTTTGAATAA
* *
2101229 ATATCTTTGAGT-TGTTTCTTTTGAA-AA
1 AAATCTTTGAGTCTGTTCCTTTTGAATAA
2101256 AAATCTTTGAGTCT
1 AAATCTTTGAGTCT
2101270 ATTTATTTTG
Statistics
Matches: 63, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
27 13 0.21
28 13 0.21
29 37 0.59
ACGTcount: A:0.27, C:0.11, G:0.15, T:0.46
Consensus pattern (29 bp):
AAATCTTTGAGTCTGTTCCTTTTGAATAA
Found at i:2101252 original size:28 final size:29
Alignment explanation
Indices: 2101171--2101281 Score: 145
Period size: 29 Copynumber: 3.9 Consensus size: 29
2101161 CTCTTGAGAT
*
2101171 AAATCTTTGAGTCTGTTCCTTTTGAATAA
1 AAATCTTTGAGTCTGTTTCTTTTGAATAA
* * *
2101200 AAATCTTGGAGTTTGTTCCTTTTGAATAA
1 AAATCTTTGAGTCTGTTTCTTTTGAATAA
*
2101229 ATATCTTTGAGT-TGTTTCTTTTGAA-AA
1 AAATCTTTGAGTCTGTTTCTTTTGAATAA
* *
2101256 AAATCTTTGAGTCTATTTATTTTGAA
1 AAATCTTTGAGTCTGTTTCTTTTGAA
2101282 ACAAAGTTTT
Statistics
Matches: 73, Mismatches: 8, Indels: 3
0.87 0.10 0.04
Matches are distributed among these distances:
27 13 0.18
28 23 0.32
29 37 0.51
ACGTcount: A:0.28, C:0.10, G:0.14, T:0.48
Consensus pattern (29 bp):
AAATCTTTGAGTCTGTTTCTTTTGAATAA
Found at i:2101356 original size:52 final size:53
Alignment explanation
Indices: 2101278--2101380 Score: 172
Period size: 52 Copynumber: 2.0 Consensus size: 53
2101268 CTATTTATTT
*
2101278 TGAAACAAAGTTTTGTCTCTCTTGAGACAATTTCATG-AAAAATCTTTGAGTC
1 TGAAACAAAGTGTTGTCTCTCTTGAGACAATTTCATGAAAAAATCTTTGAGTC
**
2101330 TGAAACAAAGTGTTGTCTCTCTTGAGACAATTTTGTGAAAAAATCTTTGAG
1 TGAAACAAAGTGTTGTCTCTCTTGAGACAATTTCATGAAAAAATCTTTGAG
2101381 AGTGTTTCTT
Statistics
Matches: 47, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
52 34 0.72
53 13 0.28
ACGTcount: A:0.33, C:0.14, G:0.17, T:0.36
Consensus pattern (53 bp):
TGAAACAAAGTGTTGTCTCTCTTGAGACAATTTCATGAAAAAATCTTTGAGTC
Found at i:2101405 original size:31 final size:31
Alignment explanation
Indices: 2101367--2101432 Score: 105
Period size: 31 Copynumber: 2.1 Consensus size: 31
2101357 CAATTTTGTG
*
2101367 AAAAAATCTTTGAGAGTGTTTCTTTTGAAAC
1 AAAAAATCTTTGAGAGTGTTTCTTTGGAAAC
**
2101398 AAAAAATCTTTGAGTTTGTTTCTTTGGAAAC
1 AAAAAATCTTTGAGAGTGTTTCTTTGGAAAC
2101429 AAAA
1 AAAA
2101433 TTTTGTCTCT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.38, C:0.09, G:0.15, T:0.38
Consensus pattern (31 bp):
AAAAAATCTTTGAGAGTGTTTCTTTGGAAAC
Found at i:2101529 original size:66 final size:67
Alignment explanation
Indices: 2101384--2101529 Score: 163
Period size: 66 Copynumber: 2.2 Consensus size: 67
2101374 CTTTGAGAGT
* * *
2101384 GTTTCTTTTGAAACAAAAAATCTTTGAGTTTGTTTCTTTGGAAACAAAATTTTGTCTCTCTTAAG
1 GTTTCTTTTGAAACAAAAAATCTTTGAATCTGTTTCTTT-GAAACAAAATTTTGTATCTCTTAAG
*
2101449 ATA
65 ACA
* * *
2101452 ATTTCTTTTGAAAC-AAAAATCTTTGAATCTGTTTCTCTT-AAA-ATGAATTTTGTATCTCTTGA
1 GTTTCTTTTGAAACAAAAAATCTTTGAATCTGTTTCT-TTGAAACA-AAATTTTGTATCTCTTAA
*
2101514 GACC
64 GACA
*
2101518 GTTTCTCTTGAA
1 GTTTCTTTTGAA
2101530 GTAAATCTTT
Statistics
Matches: 66, Mismatches: 10, Indels: 6
0.80 0.12 0.07
Matches are distributed among these distances:
65 1 0.02
66 30 0.45
67 20 0.30
68 15 0.23
ACGTcount: A:0.29, C:0.14, G:0.12, T:0.45
Consensus pattern (67 bp):
GTTTCTTTTGAAACAAAAAATCTTTGAATCTGTTTCTTTGAAACAAAATTTTGTATCTCTTAAGA
CA
Found at i:2102336 original size:28 final size:28
Alignment explanation
Indices: 2102258--2102346 Score: 99
Period size: 28 Copynumber: 3.1 Consensus size: 28
2102248 GAAACAAAAC
* * *
2102258 AAACAAAGTCTTTGAGTATGTTTTTCTTG
1 AAACAAA-TCTTTGAATTTGTTTCTCTTG
** *
2102287 AAACAAATCTTTGGGTTTGTTTCTTTTG
1 AAACAAATCTTTGAATTTGTTTCTCTTG
2102315 AAACAAATCTTT-AATTTGGTTTCTCTTG
1 AAACAAATCTTTGAATTT-GTTTCTCTTG
2102343 AAAC
1 AAAC
2102347 CATAACTCCT
Statistics
Matches: 52, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
27 3 0.06
28 42 0.81
29 7 0.13
ACGTcount: A:0.28, C:0.12, G:0.15, T:0.45
Consensus pattern (28 bp):
AAACAAATCTTTGAATTTGTTTCTCTTG
Found at i:2102426 original size:46 final size:45
Alignment explanation
Indices: 2102375--2102742 Score: 247
Period size: 40 Copynumber: 8.5 Consensus size: 45
2102365 CCAGCCATCC
* * *
2102375 TCATCACGTAGGAACCGTGTTATCACCTTTAGATGGCCATAACTCT
1 TCATCACGTAGGAGCCGTGTCATCACC-TTAGATGGCCAGAACTCT
* * *
2102421 TCATCACGTATGAGCCGTGTCATTC-CC-CAGA---CCAGATCTCT
1 TCATCACGTAGGAGCCGTGTCA-TCACCTTAGATGGCCAGAACTCT
* * ** * *
2102462 TCATCACGTATGAGCCGTGTCA--ACCATAGATAACCAG-CCGTCC
1 TCATCACGTAGGAGCCGTGTCATCACCTTAGATGGCCAGAAC-TCT
* *
2102505 TCATCACGTAGGAACCGTGTTATCACCTTTAGATGGCCAGAACTCT
1 TCATCACGTAGGAGCCGTGTCATCACC-TTAGATGGCCAGAACTCT
* * * *
2102551 TCATCACGTATGAGCCGTGTCAT-TCC-TCGA---CCAGACCTCT
1 TCATCACGTAGGAGCCGTGTCATCACCTTAGATGGCCAGAACTCT
** * *
2102591 TCATCACGTAGGAGCCGTGTCA-C-CCTTAGATAACCAG-CCGTCC
1 TCATCACGTAGGAGCCGTGTCATCACCTTAGATGGCCAGAAC-TCT
* *
2102634 TCATCACGTAGGAACCGTGTTATCACCTTTAGATGGCCAAGAACTCT
1 TCATCACGTAGGAGCCGTGTCATCACC-TTAGATGGCC-AGAACTCT
* * *** *
2102681 TCATCATGTATGAGTAATGTCATC-CCCT-GA---CCAGAACTCT
1 TCATCACGTAGGAGCCGTGTCATCACCTTAGATGGCCAGAACTCT
*
2102721 TCATCACGTATGAGCCGTGTCA
1 TCATCACGTAGGAGCCGTGTCA
2102743 ACCTCAGATA
Statistics
Matches: 256, Mismatches: 44, Indels: 50
0.73 0.13 0.14
Matches are distributed among these distances:
39 4 0.02
40 62 0.24
41 32 0.12
42 3 0.01
43 54 0.21
44 6 0.02
45 8 0.03
46 62 0.24
47 24 0.09
48 1 0.00
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (45 bp):
TCATCACGTAGGAGCCGTGTCATCACCTTAGATGGCCAGAACTCT
Found at i:2102702 original size:130 final size:130
Alignment explanation
Indices: 2102365--2102837 Score: 655
Period size: 130 Copynumber: 3.6 Consensus size: 130
2102355 CTAAAGATGG
* *
2102365 CCAGCCATCCTCATCACGTAGGAACCGTGTTATCACCTTTAGATGGCCATAACTCTTCATCACGT
1 CCAGCCGTCCTCATCACGTAGGAACCGTGTTATCACCTTTAGATGGCCAGAACTCTTCATCACGT
* *
2102430 ATGAGCCGTGTCATTCCCCAGACCAGATCTCTTCATCACGTATGAGCCGTGTCAACCATAGATAA
66 ATGAGCCGTGTCATTCCCCAGACCAGAACTCTTCATCACGTATGAGCCGTGTCAACCTTAGATAA
2102495 CCAGCCGTCCTCATCACGTAGGAACCGTGTTATCACCTTTAGATGGCCAGAACTCTTCATCACGT
1 CCAGCCGTCCTCATCACGTAGGAACCGTGTTATCACCTTTAGATGGCCAGAACTCTTCATCACGT
* * * *
2102560 ATGAGCCGTGTCATTCCTC-GACCAGACCTCTTCATCACGTAGGAGCCGTGTCACCCTTAGATAA
66 ATGAGCCGTGTCATTCCCCAGACCAGAACTCTTCATCACGTATGAGCCGTGTCAACCTTAGATAA
*
2102624 CCAGCCGTCCTCATCACGTAGGAACCGTGTTATCACCTTTAGATGGCCAAGAACTCTTCATCATG
1 CCAGCCGTCCTCATCACGTAGGAACCGTGTTATCACCTTTAGATGGCC-AGAACTCTTCATCACG
*** * *
2102689 TATGAGTAATGTCA-TCCCCTGACCAGAACTCTTCATCACGTATGAGCCGTGTCAACCTCAGATA
65 TATGAGCCGTGTCATTCCCCAGACCAGAACTCTTCATCACGTATGAGCCGTGTCAACCTTAGATA
2102753 A
130 A
* * * **
2102754 CCAGCCGTCCGCAGCAGAGT-GGAACCGTGTTAGCATCATTCCTAAAGATGGCCAGAACTCTTCA
1 CCAGCCGTCCTCATCA-CGTAGGAACCGTGTT---ATCA--CCTTTAGATGGCCAGAACTCTTCA
* * **
2102818 TCGCGGATGAGAAGTGTCAT
60 TCACGTATGAGCCGTGTCAT
2102838 CCCTCGGCCA
Statistics
Matches: 308, Mismatches: 26, Indels: 13
0.89 0.07 0.04
Matches are distributed among these distances:
129 93 0.30
130 173 0.56
131 2 0.01
133 4 0.01
134 25 0.08
135 11 0.04
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.25
Consensus pattern (130 bp):
CCAGCCGTCCTCATCACGTAGGAACCGTGTTATCACCTTTAGATGGCCAGAACTCTTCATCACGT
ATGAGCCGTGTCATTCCCCAGACCAGAACTCTTCATCACGTATGAGCCGTGTCAACCTTAGATAA
Found at i:2102888 original size:91 final size:93
Alignment explanation
Indices: 2102760--2102929 Score: 272
Period size: 91 Copynumber: 1.8 Consensus size: 93
2102750 ATAACCAGCC
* *
2102760 GTCCGCAGCAGAGTGGAACCGTGTTAGCATCATTCCTAAAGATGGCC-AGA-ACTCTTCATCGCG
1 GTCCCCAGCAGAGTGGAACCATGTTAGCATCATTCCTAAAGATGGCCAAGATACTCTTCATCGCG
2102823 GATGAGAAGTGTCATCCCTCGGCCAGAT
66 GATGAGAAGTGTCATCCCTCGGCCAGAT
* * *
2102851 GTCCCCAGCAGAGTGGAACCATGTTATCATCTTTCCTAAAGATGGCCAAGATTCTCTTCATCGCG
1 GTCCCCAGCAGAGTGGAACCATGTTAGCATCATTCCTAAAGATGGCCAAGATACTCTTCATCGCG
*
2102916 GATGAGCAGTGTCA
66 GATGAGAAGTGTCA
2102930 ATTTTACGAG
Statistics
Matches: 71, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
91 43 0.61
92 3 0.04
93 25 0.35
ACGTcount: A:0.25, C:0.26, G:0.25, T:0.24
Consensus pattern (93 bp):
GTCCCCAGCAGAGTGGAACCATGTTAGCATCATTCCTAAAGATGGCCAAGATACTCTTCATCGCG
GATGAGAAGTGTCATCCCTCGGCCAGAT
Found at i:2109557 original size:16 final size:16
Alignment explanation
Indices: 2109521--2109551 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
2109511 AATGCAGACC
2109521 ATTTTTCTTTAAAATG
1 ATTTTTCTTTAAAATG
2109537 ATTTTTCTTTAAAAT
1 ATTTTTCTTTAAAAT
2109552 TGTTTTAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.32, C:0.06, G:0.03, T:0.58
Consensus pattern (16 bp):
ATTTTTCTTTAAAATG
Found at i:2114334 original size:40 final size:40
Alignment explanation
Indices: 2114276--2114495 Score: 178
Period size: 40 Copynumber: 5.5 Consensus size: 40
2114266 GTAAAGACTC
* *
2114276 GTACTATAGCGGCATTTTTATACAAACGCCGCTAAATAAT
1 GTACTTTAGCGGCGTTTTTATACAAACGCCGCTAAATAAT
* * * * *
2114316 TTACTTTAGCGGCGTTTTTATACAAACGCCACGAAAGACT
1 GTACTTTAGCGGCGTTTTTATACAAACGCCGCTAAATAAT
* * * *
2114356 GTAATTTA-CTGTCGTTTATAGAACAAACGCCGCT--ATAACT
1 GTACTTTAGC-GGCGTTTTTA-TACAAACGCCGCTAAATAA-T
* *
2114396 CGTGA-TTTAGTGGCGTTTTTATACAAACGCCGCTAAATACT
1 -GT-ACTTTAGCGGCGTTTTTATACAAACGCCGCTAAATAAT
* * * * * *
2114437 CGTACTATAGTGGCGTTTTTATATAAATGCCTCAAAATAAT
1 -GTACTTTAGCGGCGTTTTTATACAAACGCCGCTAAATAAT
*
2114478 GTACTTTAGTGGCGTTTT
1 GTACTTTAGCGGCGTTTT
2114496 AAGCACAAAC
Statistics
Matches: 143, Mismatches: 28, Indels: 18
0.76 0.15 0.10
Matches are distributed among these distances:
39 3 0.02
40 78 0.55
41 58 0.41
42 4 0.03
ACGTcount: A:0.30, C:0.19, G:0.17, T:0.34
Consensus pattern (40 bp):
GTACTTTAGCGGCGTTTTTATACAAACGCCGCTAAATAAT
Found at i:2114355 original size:81 final size:81
Alignment explanation
Indices: 2114256--2114527 Score: 241
Period size: 81 Copynumber: 3.3 Consensus size: 81
2114246 CATTTCTAGA
*
2114256 ACAAACGCCA-GTAAAGACTCGTACTATAGCGGCATTTTTATACAAACGCCGCTAAATAATTTAC
1 ACAAACGCCACG-AAAGACTCGTACTATAGCGGCGTTTTTATACAAACGCCGCTAAATAATTTAC
*
2114320 TTTAGCGGCGTTTTTAT
65 TTTAGTGGCGTTTTTAT
* * * * *
2114337 ACAAACGCCACGAAAGACT-GTAATTTA-CTGTCGTTTATAGAACAAACGCCGCT--ATAACTCG
1 ACAAACGCCACGAAAGACTCGTACTATAGC-GGCGTTTTTA-TACAAACGCCGCTAAATAA-T--
*
2114398 TGA-TTTAGTGGCGTTTTTAT
61 TTACTTTAGTGGCGTTTTTAT
* * * * * * * * *
2114418 ACAAACGCCGCTAAATACTCGTACTATAGTGGCGTTTTTATATAAATGCCTCAAAATAATGTACT
1 ACAAACGCCACGAAAGACTCGTACTATAGCGGCGTTTTTATACAAACGCCGCTAAATAATTTACT
* *
2114483 TTAGTGGCGTTTTAAGC
66 TTAGTGGCGTTTTTA-T
* * *
2114500 ACAAACACCACTAAATACTCGTACTATA
1 ACAAACGCCACGAAAGACTCGTACTATA
2114528 AAACAACATT
Statistics
Matches: 152, Mismatches: 27, Indels: 23
0.75 0.13 0.11
Matches are distributed among these distances:
79 5 0.03
80 15 0.10
81 84 0.55
82 44 0.29
83 4 0.03
ACGTcount: A:0.33, C:0.21, G:0.16, T:0.31
Consensus pattern (81 bp):
ACAAACGCCACGAAAGACTCGTACTATAGCGGCGTTTTTATACAAACGCCGCTAAATAATTTACT
TTAGTGGCGTTTTTAT
Found at i:2114448 original size:41 final size:41
Alignment explanation
Indices: 2114256--2114524 Score: 226
Period size: 41 Copynumber: 6.6 Consensus size: 41
2114246 CATTTCTAGA
* * * *
2114256 ACAAACGCCAG-TAAAGACTCGTACTATAGCGGCATTTTTAT
1 ACAAACGCC-GCTAAATACTCGTACTTTAGTGGCGTTTTTAT
* * *
2114297 ACAAACGCCGCTAAATAAT-TTACTTTAGCGGCGTTTTTAT
1 ACAAACGCCGCTAAATACTCGTACTTTAGTGGCGTTTTTAT
* * * * * * * *
2114337 ACAAACGCCACGAAAGACT-GTAATTTACTGTCGTTTATAGA
1 ACAAACGCCGCTAAATACTCGTACTTTAGTGGCGTTTTTA-T
*
2114378 ACAAACGCCGCTATA-ACTCGTGA-TTTAGTGGCGTTTTTAT
1 ACAAACGCCGCTAAATACTCGT-ACTTTAGTGGCGTTTTTAT
*
2114418 ACAAACGCCGCTAAATACTCGTACTATAGTGGCGTTTTTAT
1 ACAAACGCCGCTAAATACTCGTACTTTAGTGGCGTTTTTAT
* * * * * * *
2114459 ATAAATGCCTCAAAATAAT-GTACTTTAGTGGCGTTTTAAGC
1 ACAAACGCCGCTAAATACTCGTACTTTAGTGGCGTTTTTA-T
* *
2114500 ACAAACACCACTAAATACTCGTACT
1 ACAAACGCCGCTAAATACTCGTACT
2114525 ATAAAACAAC
Statistics
Matches: 181, Mismatches: 39, Indels: 15
0.77 0.17 0.06
Matches are distributed among these distances:
40 84 0.46
41 91 0.50
42 6 0.03
ACGTcount: A:0.33, C:0.21, G:0.16, T:0.30
Consensus pattern (41 bp):
ACAAACGCCGCTAAATACTCGTACTTTAGTGGCGTTTTTAT
Found at i:2118653 original size:21 final size:21
Alignment explanation
Indices: 2118629--2118687 Score: 64
Period size: 21 Copynumber: 2.8 Consensus size: 21
2118619 TAATTTATTA
**
2118629 TTATGGATTTCATTTTTCTTG
1 TTATGGATTTCAAGTTTCTTG
* * *
2118650 TTATAGATTTTAAGTTTGTTG
1 TTATGGATTTCAAGTTTCTTG
*
2118671 TTATGGATGTCAAGTTT
1 TTATGGATTTCAAGTTT
2118688 ATTGGAAAAT
Statistics
Matches: 30, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.20, C:0.05, G:0.19, T:0.56
Consensus pattern (21 bp):
TTATGGATTTCAAGTTTCTTG
Found at i:2118922 original size:43 final size:43
Alignment explanation
Indices: 2118891--2119056 Score: 201
Period size: 43 Copynumber: 3.9 Consensus size: 43
2118881 TGTTTGTGAA
* *
2118891 AAAAACGCCGCTAAATCTCAAGACCTATTGCGGCGTTTG-TAGG
1 AAAAACGCCGCTAAATATCAACACCTATTGCGGCGTTTGCT-GG
2118934 -AAAACGCCGCTAAATATCAACACCTATTGCGGCGTTTGCTGG
1 AAAAACGCCGCTAAATATCAACACCTATTGCGGCGTTTGCTGG
* * * *
2118976 AAAAATGCCGCCAAATATCAACATCTATTGCGGCGTTTGTTGG
1 AAAAACGCCGCTAAATATCAACACCTATTGCGGCGTTTGCTGG
* * *** *
2119019 ACAAACGCCGCTATATATCGTTACCTATTGCGGTGTTT
1 AAAAACGCCGCTAAATATCAACACCTATTGCGGCGTTT
2119057 TTTGTTACCA
Statistics
Matches: 106, Mismatches: 15, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
42 38 0.36
43 68 0.64
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.27
Consensus pattern (43 bp):
AAAAACGCCGCTAAATATCAACACCTATTGCGGCGTTTGCTGG
Found at i:2118971 original size:85 final size:86
Alignment explanation
Indices: 2118875--2119056 Score: 233
Period size: 85 Copynumber: 2.1 Consensus size: 86
2118865 ACCAGATCTT
* * *
2118875 TTGCGGTGTTTG-TGAAAAAAACGCCGCTAAATCTCAAGACCTATTGCGGCGTTTGTAGGA-AAA
1 TTGCGGTGTTTGCTG-AAAAAACGCCGCCAAATATCAACACCTATTGCGGCGTTTGTAGGACAAA
2118938 CGCCGCTAAATATCAACACCTA
65 CGCCGCTAAATATCAACACCTA
* * * * *
2118960 TTGCGGCGTTTGCTGGAAAAATGCCGCCAAATATCAACATCTATTGCGGCGTTTGTTGGACAAAC
1 TTGCGGTGTTTGCTGAAAAAACGCCGCCAAATATCAACACCTATTGCGGCGTTTGTAGGACAAAC
* ***
2119025 GCCGCTATATATCGTTACCTA
66 GCCGCTAAATATCAACACCTA
2119046 TTGCGGTGTTT
1 TTGCGGTGTTT
2119057 TTTGTTACCA
Statistics
Matches: 82, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
85 49 0.60
86 33 0.40
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.29
Consensus pattern (86 bp):
TTGCGGTGTTTGCTGAAAAAACGCCGCCAAATATCAACACCTATTGCGGCGTTTGTAGGACAAAC
GCCGCTAAATATCAACACCTA
Found at i:2119694 original size:2 final size:2
Alignment explanation
Indices: 2119687--2119713 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
2119677 AAAGGAGAAT
2119687 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
2119714 CAGACTAAAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:2123746 original size:18 final size:17
Alignment explanation
Indices: 2123710--2123743 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
2123700 CTATTAAAAT
*
2123710 TTTAACATTTTAATTAA
1 TTTAAAATTTTAATTAA
*
2123727 TTTAAAATTTTGATTAA
1 TTTAAAATTTTAATTAA
2123744 ATTGTGATTA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.41, C:0.03, G:0.03, T:0.53
Consensus pattern (17 bp):
TTTAAAATTTTAATTAA
Found at i:2128211 original size:16 final size:17
Alignment explanation
Indices: 2128181--2128213 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
2128171 AGAGTAATTA
*
2128181 TAAAATAATATTTATTT
1 TAAAATAATAATTATTT
2128198 TAAAA-AATAATTATTT
1 TAAAATAATAATTATTT
2128214 GCATAAAAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (17 bp):
TAAAATAATAATTATTT
Found at i:2128540 original size:15 final size:15
Alignment explanation
Indices: 2128520--2128550 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
2128510 TAATTCATGT
2128520 TATATATTAAAAATA
1 TATATATTAAAAATA
*
2128535 TATATATTAAATATA
1 TATATATTAAAAATA
2128550 T
1 T
2128551 GATAAGAAGG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (15 bp):
TATATATTAAAAATA
Found at i:2129376 original size:24 final size:24
Alignment explanation
Indices: 2129349--2129405 Score: 105
Period size: 24 Copynumber: 2.4 Consensus size: 24
2129339 CCAGTCATTA
2129349 ACAGTTAATGGAAGTGATGACGTG
1 ACAGTTAATGGAAGTGATGACGTG
2129373 ACAGTTAATGGAAGTGATGACGTG
1 ACAGTTAATGGAAGTGATGACGTG
*
2129397 AAAGTTAAT
1 ACAGTTAAT
2129406 AAAATTAATA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.37, C:0.07, G:0.30, T:0.26
Consensus pattern (24 bp):
ACAGTTAATGGAAGTGATGACGTG
Found at i:2132563 original size:24 final size:24
Alignment explanation
Indices: 2132536--2132644 Score: 121
Period size: 24 Copynumber: 4.5 Consensus size: 24
2132526 AAACGGAGAT
*
2132536 ATCAGAAATCAAAACAGAATTCAG
1 ATCAGAAATCAGAACAGAATTCAG
* * *
2132560 ATCAGATATCAGAACAAAATCCAG
1 ATCAGAAATCAGAACAGAATTCAG
2132584 ATCAGAAATCAGAACAGAATTCAG
1 ATCAGAAATCAGAACAGAATTCAG
* * * *
2132608 GTAATG-TATCAGAACAGAATTCAA
1 ATCA-GAAATCAGAACAGAATTCAG
*
2132632 ATCGGAAATCAGA
1 ATCAGAAATCAGA
2132645 TAAAATATTT
Statistics
Matches: 68, Mismatches: 15, Indels: 4
0.78 0.17 0.05
Matches are distributed among these distances:
23 1 0.01
24 66 0.97
25 1 0.01
ACGTcount: A:0.50, C:0.17, G:0.16, T:0.18
Consensus pattern (24 bp):
ATCAGAAATCAGAACAGAATTCAG
Found at i:2132565 original size:12 final size:12
Alignment explanation
Indices: 2132538--2132607 Score: 61
Period size: 12 Copynumber: 5.8 Consensus size: 12
2132528 ACGGAGATAT
* *
2132538 CAGAAATCAAAA
1 CAGAATTCAGAA
*
2132550 CAGAATTCAGAT
1 CAGAATTCAGAA
2132562 CAG-ATATCAGAA
1 CAGAAT-TCAGAA
* * *
2132574 CAAAATCCAGAT
1 CAGAATTCAGAA
*
2132586 CAGAAATCAGAA
1 CAGAATTCAGAA
2132598 CAGAATTCAG
1 CAGAATTCAG
2132608 GTAATGTATC
Statistics
Matches: 44, Mismatches: 12, Indels: 4
0.73 0.20 0.07
Matches are distributed among these distances:
11 2 0.05
12 40 0.91
13 2 0.05
ACGTcount: A:0.51, C:0.19, G:0.14, T:0.16
Consensus pattern (12 bp):
CAGAATTCAGAA
Found at i:2132607 original size:48 final size:48
Alignment explanation
Indices: 2132536--2132644 Score: 139
Period size: 48 Copynumber: 2.3 Consensus size: 48
2132526 AAACGGAGAT
* * *
2132536 ATCAGAAATCAAAACAGAATTCAGATCA-GATATCAGAACAAAATCCAG
1 ATCAGAAATCAGAACAGAATTCAGATAATG-TATCAGAACAAAATCCAA
* * *
2132584 ATCAGAAATCAGAACAGAATTCAGGTAATGTATCAGAACAGAATTCAA
1 ATCAGAAATCAGAACAGAATTCAGATAATGTATCAGAACAAAATCCAA
*
2132632 ATCGGAAATCAGA
1 ATCAGAAATCAGA
2132645 TAAAATATTT
Statistics
Matches: 53, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
48 52 0.98
49 1 0.02
ACGTcount: A:0.50, C:0.17, G:0.16, T:0.18
Consensus pattern (48 bp):
ATCAGAAATCAGAACAGAATTCAGATAATGTATCAGAACAAAATCCAA
Found at i:2135058 original size:13 final size:13
Alignment explanation
Indices: 2135040--2135069 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
2135030 GCCGGTCAAC
2135040 GGTCAACGGGTCG
1 GGTCAACGGGTCG
*
2135053 GGTCAAGGGGTCG
1 GGTCAACGGGTCG
2135066 GGTC
1 GGTC
2135070 GGGTTGTGAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.13, C:0.20, G:0.50, T:0.17
Consensus pattern (13 bp):
GGTCAACGGGTCG
Found at i:2137917 original size:92 final size:94
Alignment explanation
Indices: 2137752--2137927 Score: 302
Period size: 92 Copynumber: 1.9 Consensus size: 94
2137742 ATTTTAAGGC
* * *
2137752 TAAGATCGATTTGATTTAATTATATTTTTTTAAAAATATTTTTAATAAATATATAATAACTTAAT
1 TAAGATCGATTTGATTTAATTATAATTTTTT-AAAATATTTTTAAAAAATATACAATAACTTAAT
2137817 TCGATTAATTTTATTATATATATTTGAGGT
65 TCGATTAATTTTATTATATATATTTGAGGT
2137847 TAAGATCGATTTGATTTAATTATAATTTTTT-AAATA-TTTTAAAAAATATACAATAACTTAATT
1 TAAGATCGATTTGATTTAATTATAATTTTTTAAAATATTTTTAAAAAATATACAATAACTTAATT
2137910 CGATTAATTTTATTATAT
66 CGATTAATTTTATTATAT
2137928 TTGTATTTAA
Statistics
Matches: 78, Mismatches: 3, Indels: 3
0.93 0.04 0.04
Matches are distributed among these distances:
92 43 0.55
93 5 0.06
95 30 0.38
ACGTcount: A:0.40, C:0.04, G:0.06, T:0.49
Consensus pattern (94 bp):
TAAGATCGATTTGATTTAATTATAATTTTTTAAAATATTTTTAAAAAATATACAATAACTTAATT
CGATTAATTTTATTATATATATTTGAGGT
Found at i:2139584 original size:60 final size:60
Alignment explanation
Indices: 2139472--2139584 Score: 136
Period size: 60 Copynumber: 1.9 Consensus size: 60
2139462 ATAATCAGGT
* * * *
2139472 GACCATTTTGTAACTTTTAATAGTTAAAGGAGTTAACAAAGTAACATTCTATAACTAGAG
1 GACCATTTTATAACTTTTAATAGTCAAAGGACTTAACAAAGTAACATCCTATAACTAGAG
* * * * **
2139532 GACCATTTTATAACTTTTCATAGTCGAGGGACTTAATAAAGTAGTATCCTATA
1 GACCATTTTATAACTTTTAATAGTCAAAGGACTTAACAAAGTAACATCCTATA
2139585 GTCAAGACTT
Statistics
Matches: 43, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
60 43 1.00
ACGTcount: A:0.37, C:0.13, G:0.15, T:0.35
Consensus pattern (60 bp):
GACCATTTTATAACTTTTAATAGTCAAAGGACTTAACAAAGTAACATCCTATAACTAGAG
Found at i:2143654 original size:167 final size:167
Alignment explanation
Indices: 2143378--2143712 Score: 661
Period size: 167 Copynumber: 2.0 Consensus size: 167
2143368 GTGTTTCTAT
*
2143378 AGTATCTTATTCAGTAATTATAAACGGCCAAGCTAGAAAAGCTTTTAAACCCCAAATAGACATTC
1 AGTATCTTATTCAGTAATTACAAACGGCCAAGCTAGAAAAGCTTTTAAACCCCAAATAGACATTC
2143443 GACAGAGAGATCCACCAAGTCCGTACCTGTTCCTAATAAGCAGTTAAGGGTTCTCATCCCTACTA
66 GACAGAGAGATCCACCAAGTCCGTACCTGTTCCTAATAAGCAGTTAAGGGTTCTCATCCCTACTA
2143508 AGACGAGCGGAGGCATTGAGCTCATTAAAGTGAGTAA
131 AGACGAGCGGAGGCATTGAGCTCATTAAAGTGAGTAA
2143545 AGTATCTTATTCAGTAATTACAAACGGCCAAGCTAGAAAAGCTTTTAAACCCCAAATAGACATTC
1 AGTATCTTATTCAGTAATTACAAACGGCCAAGCTAGAAAAGCTTTTAAACCCCAAATAGACATTC
2143610 GACAGAGAGATCCACCAAGTCCGTACCTGTTCCTAATAAGCAGTTAAGGGTTCTCATCCCTACTA
66 GACAGAGAGATCCACCAAGTCCGTACCTGTTCCTAATAAGCAGTTAAGGGTTCTCATCCCTACTA
2143675 AGACGAGCGGAGGCATTGAGCTCATTAAAGTGAGTAA
131 AGACGAGCGGAGGCATTGAGCTCATTAAAGTGAGTAA
2143712 A
1 A
2143713 AATAACAAGT
Statistics
Matches: 167, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
167 167 1.00
ACGTcount: A:0.35, C:0.22, G:0.19, T:0.24
Consensus pattern (167 bp):
AGTATCTTATTCAGTAATTACAAACGGCCAAGCTAGAAAAGCTTTTAAACCCCAAATAGACATTC
GACAGAGAGATCCACCAAGTCCGTACCTGTTCCTAATAAGCAGTTAAGGGTTCTCATCCCTACTA
AGACGAGCGGAGGCATTGAGCTCATTAAAGTGAGTAA
Found at i:2152014 original size:2 final size:2
Alignment explanation
Indices: 2152007--2152041 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
2151997 AAAACATTAA
2152007 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
2152042 ATTTATAAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:2153630 original size:3 final size:3
Alignment explanation
Indices: 2153622--2153668 Score: 67
Period size: 3 Copynumber: 15.0 Consensus size: 3
2153612 TTTATTTATT
*
2153622 TAA TAA TAA TAA TAA TATA TAA TTAA TAT TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TA-A TAA -TAA TAA TAA TAA TAA TAA TAA TAA
2153669 AACAAAATGA
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
3 34 0.85
4 6 0.15
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (3 bp):
TAA
Found at i:2154840 original size:31 final size:31
Alignment explanation
Indices: 2154802--2154957 Score: 260
Period size: 31 Copynumber: 5.0 Consensus size: 31
2154792 CCCGAAGGAC
* * *
2154802 CAGTCCATA-GATTCCGAAGAACCTAGGTAAT
1 CAGTCCATATG-TCCCGAAGAACATAGGTAAA
2154833 CAGTCCATATGTCCCGAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
*
2154864 CAGTCCATTTGTCCCGAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
2154895 CAGTCCATATGTCCCGAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
2154926 CAGTCCATATGTCCCGAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
2154957 C
1 C
2154958 CCTCGACCCT
Statistics
Matches: 119, Mismatches: 5, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
31 118 0.99
32 1 0.01
ACGTcount: A:0.37, C:0.23, G:0.19, T:0.21
Consensus pattern (31 bp):
CAGTCCATATGTCCCGAAGAACATAGGTAAA
Found at i:2155656 original size:263 final size:263
Alignment explanation
Indices: 2155189--2155721 Score: 1048
Period size: 263 Copynumber: 2.0 Consensus size: 263
2155179 ATATAGCTTC
2155189 ATTCATATCACATATTCATATAAGCTCATAGCTTCTTTCACATATACATGTAATCACTTAGTCTA
1 ATTCATATCACATATTCATATAAGCTCATAGCTTCTTTCACATATACATGTAATCACTTAGTCTA
*
2155254 TTTTCATGTAATTCTTTTCACTTCTCATATAATTTTATATTTATATCTCACATAGCTCATATCAC
66 TTTTCATGTAATTCTTTTCACTTCTCATATAATTTTATATTCATATCTCACATAGCTCATATCAC
2155319 CTTGCATTGTTTCATATAAACATAGATGTCATATCTTGTTCGCATATATTTTCCATATAACTCAT
131 CTTGCATTGTTTCATATAAACATAGATGTCATATCTTGTTCGCATATATTTTCCATATAACTCAT
2155384 ATATCTCATAGTTCTTTCACATAGCTCACTATCATATTTTCATATCATATATCTTATAATAGATT
196 ATATCTCATAGTTCTTTCACATAGCTCACTATCATATTTTCATATCATATATCTTATAATAGATT
2155449 CTT
261 CTT
2155452 ATTCATATCACATATTCATATAAGCTCATAGCTTCTTTCACATATACATGTAATCACTTAGTCTA
1 ATTCATATCACATATTCATATAAGCTCATAGCTTCTTTCACATATACATGTAATCACTTAGTCTA
2155517 TTTTCATGTAATTCTTTTCACTTCTCATATAATTTTATATTCATATCTCACATAGCTCATATCAC
66 TTTTCATGTAATTCTTTTCACTTCTCATATAATTTTATATTCATATCTCACATAGCTCATATCAC
2155582 CTTGCATTGTTTCATATAAACATAGATGTCATATCTTGTTCGCATATATTTTCCATATAACTCAT
131 CTTGCATTGTTTCATATAAACATAGATGTCATATCTTGTTCGCATATATTTTCCATATAACTCAT
2155647 ATATCTCATAGTTCTTTCACATAGCTCACTATCATATTTTCATATCATATATCTTATAATAGATT
196 ATATCTCATAGTTCTTTCACATAGCTCACTATCATATTTTCATATCATATATCTTATAATAGATT
2155712 CTT
261 CTT
2155715 ATATCAT
1 AT-TCAT
2155722 CATTTGTTTC
Statistics
Matches: 268, Mismatches: 1, Indels: 1
0.99 0.00 0.00
Matches are distributed among these distances:
263 264 0.99
264 4 0.01
ACGTcount: A:0.31, C:0.20, G:0.06, T:0.44
Consensus pattern (263 bp):
ATTCATATCACATATTCATATAAGCTCATAGCTTCTTTCACATATACATGTAATCACTTAGTCTA
TTTTCATGTAATTCTTTTCACTTCTCATATAATTTTATATTCATATCTCACATAGCTCATATCAC
CTTGCATTGTTTCATATAAACATAGATGTCATATCTTGTTCGCATATATTTTCCATATAACTCAT
ATATCTCATAGTTCTTTCACATAGCTCACTATCATATTTTCATATCATATATCTTATAATAGATT
CTT
Found at i:2156338 original size:13 final size:14
Alignment explanation
Indices: 2156303--2156348 Score: 51
Period size: 13 Copynumber: 3.4 Consensus size: 14
2156293 CATAATGAAA
*
2156303 ATAAAT-AAATAGT
1 ATAAATAAAATAAT
2156316 ATAAATAAAATAAT
1 ATAAATAAAATAAT
*
2156330 A-AAATAAAAAAATT
1 ATAAATAAAATAA-T
2156344 ATAAA
1 ATAAA
2156349 AATATAAAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
13 16 0.57
14 9 0.32
15 3 0.11
ACGTcount: A:0.72, C:0.00, G:0.02, T:0.26
Consensus pattern (14 bp):
ATAAATAAAATAAT
Found at i:2156350 original size:17 final size:16
Alignment explanation
Indices: 2156287--2156359 Score: 53
Period size: 17 Copynumber: 4.6 Consensus size: 16
2156277 ACAAAGAAAC
*
2156287 TAAAAACATAATGAAAA
1 TAAAAAAATAAT-AAAA
* *
2156304 TAAATAAATAGT---A
1 TAAAAAAATAATAAAA
2156317 TAAATAAAATAATAAAA
1 TAAA-AAAATAATAAAA
*
2156334 TAAAAAAATTATAAAAA
1 TAAAAAAATAAT-AAAA
*
2156351 TATAAAAAT
1 TAAAAAAAT
2156360 GTATGTATAA
Statistics
Matches: 44, Mismatches: 7, Indels: 10
0.72 0.11 0.16
Matches are distributed among these distances:
13 5 0.11
14 6 0.14
16 7 0.16
17 26 0.59
ACGTcount: A:0.71, C:0.01, G:0.03, T:0.25
Consensus pattern (16 bp):
TAAAAAAATAATAAAA
Found at i:2156528 original size:14 final size:14
Alignment explanation
Indices: 2156506--2156549 Score: 54
Period size: 13 Copynumber: 3.1 Consensus size: 14
2156496 TAATGTTAGG
*
2156506 AAAATATAGTAAAA
1 AAAACATAGTAAAA
2156520 AAAACATAGT-AAA
1 AAAACATAGTAAAA
*
2156533 TAAACATAGATAAAA
1 AAAACATAG-TAAAA
2156548 AA
1 AA
2156550 TAATATAATA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
13 11 0.44
14 10 0.40
15 4 0.16
ACGTcount: A:0.70, C:0.05, G:0.07, T:0.18
Consensus pattern (14 bp):
AAAACATAGTAAAA
Found at i:2156529 original size:80 final size:72
Alignment explanation
Indices: 2156440--2156586 Score: 168
Period size: 74 Copynumber: 1.9 Consensus size: 72
2156430 AATATTAACT
* **
2156440 AAAAAATAGTAATCATAAAAATATAAAATAAAATGAAGTAAGAATATATATATATATAATGTTAG
1 AAAAAATAGTAA--ATAAAAATAGAAAA-AAAAT-AA-T-AGAATATATATATATAT-ATAATAG
2156505 GAAAATATAGTAAA
59 GAAAATATAGTAAA
* * *
2156519 AAAAACATAGTAAATAAACATAGATAAAAAATAATATAATATATATATATATATAATAGGAAAAT
1 AAAAA-ATAGTAAATAAAAATAGAAAAAAAATAATAGAATATATATATATATATAATAGGAAAAT
2156584 ATA
65 ATA
2156587 ATATAACGCA
Statistics
Matches: 61, Mismatches: 6, Indels: 8
0.81 0.08 0.11
Matches are distributed among these distances:
73 14 0.23
74 16 0.26
75 1 0.02
76 2 0.03
77 5 0.08
78 11 0.18
79 5 0.08
80 7 0.11
ACGTcount: A:0.62, C:0.02, G:0.08, T:0.28
Consensus pattern (72 bp):
AAAAAATAGTAAATAAAAATAGAAAAAAAATAATAGAATATATATATATATATAATAGGAAAATA
TAGTAAA
Found at i:2156537 original size:13 final size:13
Alignment explanation
Indices: 2156506--2156549 Score: 52
Period size: 14 Copynumber: 3.2 Consensus size: 13
2156496 TAATGTTAGG
*
2156506 AAAATATAGTAAAA
1 AAAACATAGT-AAA
2156520 AAAACATAGTAAA
1 AAAACATAGTAAA
*
2156533 TAAACATAGATAAA
1 AAAACATAG-TAAA
2156547 AAA
1 AAA
2156550 TAATATAATA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
13 11 0.42
14 15 0.58
ACGTcount: A:0.70, C:0.05, G:0.07, T:0.18
Consensus pattern (13 bp):
AAAACATAGTAAA
Found at i:2156636 original size:22 final size:22
Alignment explanation
Indices: 2156611--2156655 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
2156601 AAAATGAAAA
2156611 AATTAAATAAATAAATAAATAT
1 AATTAAATAAATAAATAAATAT
* * *
2156633 AATTAAATATATATATATATAT
1 AATTAAATAAATAAATAAATAT
2156655 A
1 A
2156656 TATATATATA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (22 bp):
AATTAAATAAATAAATAAATAT
Found at i:2156646 original size:2 final size:2
Alignment explanation
Indices: 2156639--2156679 Score: 64
Period size: 2 Copynumber: 20.5 Consensus size: 2
2156629 ATATAATTAA
* *
2156639 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT TT AT AC AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
2156680 AATAATAAGG
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:2157126 original size:37 final size:37
Alignment explanation
Indices: 2157085--2157165 Score: 99
Period size: 37 Copynumber: 2.2 Consensus size: 37
2157075 GGATCTTATC
* *
2157085 TTTAGGAATTTAAATAATAGTAGAACTCTATCCTATT
1 TTTAGGAATTTAAATAATAGTAAAACTATATCCTATT
* * ** *
2157122 TTTAGGAGTTTGAATCCTAGTAAAATTATATCCTATT
1 TTTAGGAATTTAAATAATAGTAAAACTATATCCTATT
2157159 TTTAGGA
1 TTTAGGA
2157166 GTTTGAATCT
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.35, C:0.10, G:0.14, T:0.42
Consensus pattern (37 bp):
TTTAGGAATTTAAATAATAGTAAAACTATATCCTATT
Found at i:2158229 original size:106 final size:106
Alignment explanation
Indices: 2157911--2158650 Score: 973
Period size: 106 Copynumber: 7.0 Consensus size: 106
2157901 GCATTGTTCC
* **
2157911 GAGTCCAATATCC-TCTG-TCGTGAAGTTGAAATTGGCTCTGGAACCGGGAAATTGTTTGTTGAC
1 GAGTCCAATATCCTTC-GCT-GTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTGTTGAC
* * * * *
2157974 AACCAGCTGTTCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTC
64 AACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTT
*
2158017 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGACTCTG-AA-T--GAAA-T-TTTGTTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTGTTGACAA
* * * *
2158076 TCAGCCGCCCCTTCGTCGTGAAGTTGAGA-TTGTGTTGTCTT
66 CCAGCGGTCCCTTCGTCGTGAAGTTGA-ACTTGCGTTGTCTT
* * * * *
2158117 GGGTCCAAGATCCTTCGCTGAGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTGTTGACAA
*
2158182 CCAACGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTT
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTT
* * *
2158223 GAGTCCAATATCCTAT-GCTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAATTTTTTATTGACA
1 GAGTCCAATATCCT-TCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTGTTGACA
*
2158287 ACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTA
65 ACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTT
* * * * * * *
2158329 GAGTTCAATATCATTCGTTGTGAAGCTGAAATTGGCTCTAAAATTGAGAAGTTGTTTGTTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTGTTGACAA
* * *
2158394 CCAGCAGTCCCTTCGTCATGAAGTTGAACTTACGTTGTC-T
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTT
* *
2158434 GAATTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTATTGACA
1 G-AGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTGTTGACA
*
2158499 ACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTTTCTT
65 ACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTT
* *
2158541 GAGTCTAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAAATT-ATTGTTGACA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGG-AAATTGTTTGTTGACA
* * *
2158605 ACCAGCTGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTT
65 ACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTT
2158647 GAGT
1 GAGT
2158651 GGCACGATAT
Statistics
Matches: 559, Mismatches: 60, Indels: 30
0.86 0.09 0.05
Matches are distributed among these distances:
100 80 0.14
101 4 0.01
102 5 0.01
104 3 0.01
105 6 0.01
106 450 0.81
107 11 0.02
ACGTcount: A:0.24, C:0.18, G:0.24, T:0.35
Consensus pattern (106 bp):
GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTGTTGACAA
CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTT
Found at i:2160216 original size:171 final size:173
Alignment explanation
Indices: 2159903--2160247 Score: 563
Period size: 171 Copynumber: 2.0 Consensus size: 173
2159893 AAATATGCCA
* * *
2159903 AAACAAGTGTTTCAGGGTGTTGAACCAAGGATCAATTCATTCTAATGCCTTTAATCATGTCCTGC
1 AAACAAGTGTTTCAGGGTGTTGAACCAAGGATCAATTCATTATAATG-CTCT-ATCATATCCTGC
* *
2159968 TCAAAATGTCTCTCTCTTGATGCTCTATGATCTTCGAGTGAAGTGATTCAGTGATTCGGGAATGA
64 TCAAAATGTCTCTATCTTGATGCTCTATGATCTTCGAGTGAAGTGATTCAGTGATTCGAGAATGA
2160033 TTGTGCTTGATCAATCTCATAGTTTGAAGCTTGATGTGCCATTTC
129 TTGTGCTTGATCAATCTCATAGTTTGAAGCTTGATGTGCCATTTC
*
2160078 AAACAAGTGTTTCAGGGTGTTGAACCAAGGATCAATTCATTATGATG-TCT-TCA-ATCCTGCTC
1 AAACAAGTGTTTCAGGGTGTTGAACCAAGGATCAATTCATTATAATGCTCTATCATATCCTGCTC
*
2160140 AAAATGTTTCTCTATCTTGATGCTCTATGATCTT-TAGTGAAGTGATTCAGTGATTCGAGAATGA
66 AAAATG--TCTCTATCTTGATGCTCTATGATCTTCGAGTGAAGTGATTCAGTGATTCGAGAATGA
2160204 TTGTGCTTGATCAATCTCATAGTTTGAAGCTTGATGTGCCATTT
129 TTGTGCTTGATCAATCTCATAGTTTGAAGCTTGATGTGCCATTT
2160248 TTTTAGGGAA
Statistics
Matches: 161, Mismatches: 7, Indels: 8
0.91 0.04 0.05
Matches are distributed among these distances:
170 14 0.09
171 75 0.47
172 25 0.16
173 2 0.01
175 45 0.28
ACGTcount: A:0.26, C:0.17, G:0.20, T:0.37
Consensus pattern (173 bp):
AAACAAGTGTTTCAGGGTGTTGAACCAAGGATCAATTCATTATAATGCTCTATCATATCCTGCTC
AAAATGTCTCTATCTTGATGCTCTATGATCTTCGAGTGAAGTGATTCAGTGATTCGAGAATGATT
GTGCTTGATCAATCTCATAGTTTGAAGCTTGATGTGCCATTTC
Done.