Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01001991.1 Hibiscus syriacus cultivar Beakdansim tig00004072_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2373627
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 9 of 13
Found at i:1501393 original size:29 final size:32
Alignment explanation
Indices: 1501315--1501396 Score: 93
Period size: 31 Copynumber: 2.7 Consensus size: 32
1501305 ATAAATAATC
* *
1501315 AATATAAT-TTATAATAATTTTATTTTAATAA
1 AATATAATAATATAATATTTTTATTTTAATAA
1501346 AATATAATAATCATAATATTTTTA-TTT-ATAA
1 AATATAATAAT-ATAATATTTTTATTTTAATAA
1501377 AAT-T-ATAGATATAATATTTT
1 AATATAATA-ATATAATATTTT
1501397 AATAATAATA
Statistics
Matches: 46, Mismatches: 2, Indels: 8
0.82 0.04 0.14
Matches are distributed among these distances:
29 13 0.28
30 3 0.07
31 15 0.33
32 4 0.09
33 11 0.24
ACGTcount: A:0.48, C:0.01, G:0.01, T:0.50
Consensus pattern (32 bp):
AATATAATAATATAATATTTTTATTTTAATAA
Found at i:1501429 original size:14 final size:14
Alignment explanation
Indices: 1501387--1501441 Score: 60
Period size: 14 Copynumber: 3.9 Consensus size: 14
1501377 AATTATAGAT
1501387 ATAATATTTTAAT-A
1 ATAATA-TTTAATAA
1501401 ATAATATTTACATAA
1 ATAATATTTA-ATAA
*
1501416 ATAATATTGAATAA
1 ATAATATTTAATAA
*
1501430 ATTATA-TTAATA
1 ATAATATTTAATA
1501442 TTTTAAAAAT
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
13 9 0.25
14 17 0.47
15 10 0.28
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.44
Consensus pattern (14 bp):
ATAATATTTAATAA
Found at i:1505515 original size:26 final size:26
Alignment explanation
Indices: 1505486--1505548 Score: 117
Period size: 26 Copynumber: 2.4 Consensus size: 26
1505476 ACCTTTTTTC
1505486 CTTTCTTCTTCCTTTCCTTCACCTTT
1 CTTTCTTCTTCCTTTCCTTCACCTTT
*
1505512 CTTTCTGCTTCCTTTCCTTCACCTTT
1 CTTTCTTCTTCCTTTCCTTCACCTTT
1505538 CTTTCTTCTTC
1 CTTTCTTCTTC
1505549 TTACAACAGA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 35 1.00
ACGTcount: A:0.03, C:0.38, G:0.02, T:0.57
Consensus pattern (26 bp):
CTTTCTTCTTCCTTTCCTTCACCTTT
Found at i:1507965 original size:21 final size:21
Alignment explanation
Indices: 1507938--1508010 Score: 128
Period size: 21 Copynumber: 3.5 Consensus size: 21
1507928 ACCAAGGGTA
1507938 GAGTATCGATACTCTCATTAG
1 GAGTATCGATACTCTCATTAG
* *
1507959 AAGTATCAATACTCTCATTAG
1 GAGTATCGATACTCTCATTAG
1507980 GAGTATCGATACTCTCATTAG
1 GAGTATCGATACTCTCATTAG
1508001 GAGTATCGAT
1 GAGTATCGAT
1508011 GCTAGGAATT
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 48 1.00
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.33
Consensus pattern (21 bp):
GAGTATCGATACTCTCATTAG
Found at i:1508480 original size:22 final size:22
Alignment explanation
Indices: 1508452--1508536 Score: 75
Period size: 22 Copynumber: 3.9 Consensus size: 22
1508442 AAGTTTTCTC
1508452 CATCAGTGCTAAGGCACTTTAG
1 CATCAGTGCTAAGGCACTTTAG
* * *
1508474 CATCAGTG-TGTATGCACTTTTG
1 CATCAGTGCT-AAGGCACTTTAG
* *
1508496 TATCAGTGC-AGAGACACTTTAG
1 CATCAGTGCTA-AGGCACTTTAG
* *
1508518 TATTAGTGCTAAGGCACTT
1 CATCAGTGCTAAGGCACTT
1508537 CCGTGATGAA
Statistics
Matches: 49, Mismatches: 10, Indels: 8
0.73 0.15 0.12
Matches are distributed among these distances:
21 1 0.02
22 47 0.96
23 1 0.02
ACGTcount: A:0.26, C:0.19, G:0.22, T:0.33
Consensus pattern (22 bp):
CATCAGTGCTAAGGCACTTTAG
Found at i:1509187 original size:30 final size:30
Alignment explanation
Indices: 1509151--1509222 Score: 126
Period size: 30 Copynumber: 2.4 Consensus size: 30
1509141 ATAGTCATTA
1509151 ACAATAACAATAGCAAAATTAATGGCAATG
1 ACAATAACAATAGCAAAATTAATGGCAATG
*
1509181 ACAATAACAATAGCAATATTAATGGCAATG
1 ACAATAACAATAGCAAAATTAATGGCAATG
*
1509211 ACAATGACAATA
1 ACAATAACAATA
1509223 TCAATGCCTA
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 40 1.00
ACGTcount: A:0.53, C:0.14, G:0.12, T:0.21
Consensus pattern (30 bp):
ACAATAACAATAGCAAAATTAATGGCAATG
Found at i:1509204 original size:24 final size:25
Alignment explanation
Indices: 1509176--1509240 Score: 71
Period size: 24 Copynumber: 2.7 Consensus size: 25
1509166 AAATTAATGG
1509176 CAATGACAATAACAATAG-CAATAT
1 CAATGACAATAACAATAGACAATAT
* * *
1509200 TAATGGCAATGACAAT-GACAATAT
1 CAATGACAATAACAATAGACAATAT
* *
1509224 CAATGCCTATAACAATA
1 CAATGACAATAACAATA
1509241 AAGCCAATAT
Statistics
Matches: 32, Mismatches: 7, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
23 1 0.03
24 31 0.97
ACGTcount: A:0.49, C:0.17, G:0.11, T:0.23
Consensus pattern (25 bp):
CAATGACAATAACAATAGACAATAT
Found at i:1509993 original size:185 final size:188
Alignment explanation
Indices: 1509722--1510066 Score: 502
Period size: 186 Copynumber: 1.8 Consensus size: 188
1509712 AATTCATAGT
*
1509722 CCTTTTGACTATTGCAAATGAAAAGATAATTTTTAATTTAAATATTAGTAGAATAATTACTCTTT
1 CCTTTTGACCATTGCAAATGAAAAGATAATTTTTAATTTAAATATTAGT--AATAATTACTCTTT
* * *
1509787 TAATAAGTCAATTTAAAAAGGTATTTGGTA-CTTTTTAATTTTGATTATTAAAAATAATTATATA
64 GAATAAGTCAATTTAAAAAGGTATTTGGTATCTTTTTAACTTTGAATATTAAAAATAATTATATA
* *
1509851 CTTTTTT-TATATTTCAATTTAAAATAATATTTGTTTATTTTAAATAGTAAAATGAGTTTA
129 -TTTTTTGTATATTTCAAATTAAAAGAATATTTGTTTATTTTAAATAGTAAAATGAGTTTA
* * * *
1509911 CCTTTTGACCATTGCAAAT-TAAATAT-ATTGTTTAATTTGAATATTAGT-ATGATTACTCTTTG
1 CCTTTTGACCATTGCAAATGAAAAGATAATT-TTTAATTTAAATATTAGTAATAATTACTCTTTG
** *
1509973 AATATTTCAATTTAAAAAGGTATTTGTTATCTTTTTAACTTTGAATATTAAAAATAATTATATAT
65 AATAAGTCAATTTAAAAAGGTATTTGGTATCTTTTTAACTTTGAATATTAAAAATAATTATATAT
1510038 TTTTTGTATATTTCAAATTAAAAGAATAT
130 TTTTTGTATATTTCAAATTAAAAGAATAT
1510067 ATATTTAAGT
Statistics
Matches: 140, Mismatches: 13, Indels: 9
0.86 0.08 0.06
Matches are distributed among these distances:
185 44 0.31
186 53 0.38
187 3 0.02
188 22 0.16
189 18 0.13
ACGTcount: A:0.38, C:0.06, G:0.08, T:0.47
Consensus pattern (188 bp):
CCTTTTGACCATTGCAAATGAAAAGATAATTTTTAATTTAAATATTAGTAATAATTACTCTTTGA
ATAAGTCAATTTAAAAAGGTATTTGGTATCTTTTTAACTTTGAATATTAAAAATAATTATATATT
TTTTGTATATTTCAAATTAAAAGAATATTTGTTTATTTTAAATAGTAAAATGAGTTTA
Found at i:1510081 original size:64 final size:61
Alignment explanation
Indices: 1510006--1510123 Score: 155
Period size: 61 Copynumber: 1.9 Consensus size: 61
1509996 TTGTTATCTT
* * *
1510006 TTTAACTTTGAATATTAAAAATAATTATATATTTTTTGTATATTTCAAATTAAAAGAATATATA
1 TTTAACTTTGAATAGT-AAAAGAATT-T-TATTTTTTGAATATTTCAAATTAAAAGAATATATA
* * *
1510070 TTTAAGTTTGAATGGTAAAAGAGTTTTATTTTTTGAATATTTCAAATTAAAAGA
1 TTTAACTTTGAATAGTAAAAGAATTTTATTTTTTGAATATTTCAAATTAAAAGA
1510124 TATTGTTATC
Statistics
Matches: 48, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
61 27 0.56
62 1 0.02
63 7 0.15
64 13 0.27
ACGTcount: A:0.42, C:0.03, G:0.09, T:0.46
Consensus pattern (61 bp):
TTTAACTTTGAATAGTAAAAGAATTTTATTTTTTGAATATTTCAAATTAAAAGAATATATA
Found at i:1511455 original size:18 final size:18
Alignment explanation
Indices: 1511432--1511474 Score: 63
Period size: 18 Copynumber: 2.4 Consensus size: 18
1511422 TGATTGAAAC
1511432 AATAAATATG-AATAAATA
1 AATAAATATGAAAT-AATA
1511450 AATAAATATGAAATAATA
1 AATAAATATGAAATAATA
1511468 AA-AAATA
1 AATAAATA
1511475 AATAAAAATT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
17 5 0.21
18 16 0.67
19 3 0.12
ACGTcount: A:0.70, C:0.00, G:0.05, T:0.26
Consensus pattern (18 bp):
AATAAATATGAAATAATA
Found at i:1513144 original size:37 final size:37
Alignment explanation
Indices: 1513093--1513310 Score: 150
Period size: 37 Copynumber: 6.1 Consensus size: 37
1513083 ATTTTTTTTG
* *
1513093 TGTTTCAAGAGAAACTGTCTTAAGAGATACAAAACTT
1 TGTTTCAAGAGAAACTGTCTAAAGAGAGACAAAACTT
* *
1513130 TGTTTCAAGGGAAACTGTCTAAAGGGAGACAAAACTT
1 TGTTTCAAGAGAAACTGTCTAAAGAGAGACAAAACTT
* * * * * **
1513167 AGTTCCAAAAGAAACTGTCTCAAGGGAGACGTAA-TT
1 TGTTTCAAGAGAAACTGTCTAAAGAGAGACAAAACTT
* * * ** *
1513203 TTTTTCAA-AG-AA------AAACATATTCAAAGATTT
1 TGTTTCAAGAGAAACTGTCTAAAGAGAGACAAA-ACTT
* * *
1513233 TGTTTCAAGGGAAAATGTCTCAAGAGAGACAAAA-TT
1 TGTTTCAAGAGAAACTGTCTAAAGAGAGACAAAACTT
* * *
1513269 TGTTTCAAGAGAAATTGTCTCAAGAGAGACAAAATTT
1 TGTTTCAAGAGAAACTGTCTAAAGAGAGACAAAACTT
1513306 TGTTT
1 TGTTT
1513311 TAAGTTAATT
Statistics
Matches: 139, Mismatches: 31, Indels: 22
0.72 0.16 0.11
Matches are distributed among these distances:
28 5 0.04
29 1 0.01
30 9 0.06
31 1 0.01
32 2 0.01
34 2 0.01
35 2 0.01
36 41 0.29
37 68 0.49
38 8 0.06
ACGTcount: A:0.40, C:0.12, G:0.19, T:0.29
Consensus pattern (37 bp):
TGTTTCAAGAGAAACTGTCTAAAGAGAGACAAAACTT
Found at i:1513288 original size:36 final size:37
Alignment explanation
Indices: 1513224--1513310 Score: 140
Period size: 36 Copynumber: 2.4 Consensus size: 37
1513214 AAAACATATT
*
1513224 CAAAGATTTTGTTTCAAGGGAAAATGTCTCAAGAGAGA
1 CAAA-ATTTTGTTTCAAGAGAAAATGTCTCAAGAGAGA
*
1513262 CAAAA-TTTGTTTCAAGAGAAATTGTCTCAAGAGAGA
1 CAAAATTTTGTTTCAAGAGAAAATGTCTCAAGAGAGA
1513298 CAAAATTTTGTTT
1 CAAAATTTTGTTT
1513311 TAAGTTAATT
Statistics
Matches: 46, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
36 34 0.74
37 8 0.17
38 4 0.09
ACGTcount: A:0.39, C:0.10, G:0.20, T:0.31
Consensus pattern (37 bp):
CAAAATTTTGTTTCAAGAGAAAATGTCTCAAGAGAGA
Found at i:1514029 original size:31 final size:31
Alignment explanation
Indices: 1513991--1514051 Score: 113
Period size: 31 Copynumber: 2.0 Consensus size: 31
1513981 CCTCCGTCGT
1513991 GGAGTTGAAATCGTGGATGTGTGGGTACGAA
1 GGAGTTGAAATCGTGGATGTGTGGGTACGAA
*
1514022 GGAGTTGAAATCGTGGTTGTGTGGGTACGA
1 GGAGTTGAAATCGTGGATGTGTGGGTACGA
1514052 TATCCTCCGT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.23, C:0.07, G:0.43, T:0.28
Consensus pattern (31 bp):
GGAGTTGAAATCGTGGATGTGTGGGTACGAA
Found at i:1518064 original size:19 final size:19
Alignment explanation
Indices: 1518028--1518076 Score: 61
Period size: 18 Copynumber: 2.7 Consensus size: 19
1518018 TGATTGAAAC
1518028 AATAAAAT-TG-AATAAAT
1 AATAAAATATGAAATAAAT
1518045 AAATAAAATATGAAAT-AAT
1 -AATAAAATATGAAATAAAT
1518064 AATAAAA-ATGAAA
1 AATAAAATATGAAA
1518077 AAGTCCATTT
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
17 6 0.21
18 15 0.52
19 5 0.17
20 3 0.10
ACGTcount: A:0.69, C:0.00, G:0.06, T:0.24
Consensus pattern (19 bp):
AATAAAATATGAAATAAAT
Found at i:1519146 original size:4 final size:4
Alignment explanation
Indices: 1519133--1519183 Score: 95
Period size: 4 Copynumber: 13.0 Consensus size: 4
1519123 CAAATAATGA
1519133 AAAT -AAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT
1519180 AAAT
1 AAAT
1519184 TTTTTAAAAC
Statistics
Matches: 46, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
3 3 0.07
4 43 0.93
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (4 bp):
AAAT
Found at i:1520146 original size:16 final size:15
Alignment explanation
Indices: 1520125--1520198 Score: 77
Period size: 16 Copynumber: 5.1 Consensus size: 15
1520115 TCTCTAAATA
1520125 ATTTTAATATAATTTT
1 ATTTTAATAT-ATTTT
1520141 ATTTTAATATATTTT
1 ATTTTAATATATTTT
*
1520156 A---T-ATAT-TATT
1 ATTTTAATATATTTT
*
1520166 ATTTTAAAATAATTTT
1 ATTTTAATAT-ATTTT
1520182 ATTTTAATATATTTT
1 ATTTTAATATATTTT
1520197 AT
1 AT
1520199 ATATTATTAT
Statistics
Matches: 48, Mismatches: 4, Indels: 13
0.74 0.06 0.20
Matches are distributed among these distances:
10 4 0.08
11 4 0.08
12 1 0.02
13 1 0.02
14 3 0.06
15 13 0.27
16 22 0.46
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (15 bp):
ATTTTAATATATTTT
Found at i:1520159 original size:25 final size:25
Alignment explanation
Indices: 1520121--1520208 Score: 76
Period size: 25 Copynumber: 3.5 Consensus size: 25
1520111 GAATTCTCTA
1520121 AATA-ATTTTAATATAATTTTATTTT
1 AATATATTTT-ATATAATTTTATTTT
1520146 AATATATTTTATAT-ATTATTATTTT
1 AATATATTTTATATAATT-TTATTTT
* * *
1520171 AAAATAATTTTATTTTAA-TATATTTT
1 AATAT-ATTTTA-TATAATTTTATTTT
1520197 -ATATATTATTAT
1 AATATATT-TTAT
1520209 TTTAAAATAA
Statistics
Matches: 53, Mismatches: 4, Indels: 13
0.76 0.06 0.19
Matches are distributed among these distances:
24 7 0.13
25 25 0.47
26 17 0.32
27 3 0.06
28 1 0.02
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (25 bp):
AATATATTTTATATAATTTTATTTT
Found at i:1520178 original size:41 final size:41
Alignment explanation
Indices: 1520125--1520219 Score: 181
Period size: 41 Copynumber: 2.3 Consensus size: 41
1520115 TCTCTAAATA
*
1520125 ATTTTAATATAATTTTATTTTAATATATTTTATATATTATT
1 ATTTTAAAATAATTTTATTTTAATATATTTTATATATTATT
1520166 ATTTTAAAATAATTTTATTTTAATATATTTTATATATTATT
1 ATTTTAAAATAATTTTATTTTAATATATTTTATATATTATT
1520207 ATTTTAAAATAAT
1 ATTTTAAAATAAT
1520220 CTAAATAAAA
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 53 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (41 bp):
ATTTTAAAATAATTTTATTTTAATATATTTTATATATTATT
Found at i:1520209 original size:15 final size:15
Alignment explanation
Indices: 1520150--1520212 Score: 57
Period size: 15 Copynumber: 4.5 Consensus size: 15
1520140 TATTTTAATA
1520150 TATTTTATATATTAT
1 TATTTTATATATTAT
1520165 TATTTTA-A-A--AT
1 TATTTTATATATTAT
*
1520176 AATTTTAT-T-TTAAT
1 TATTTTATATATT-AT
1520190 ATATTTTATATATTAT
1 -TATTTTATATATTAT
1520206 TATTTTA
1 TATTTTA
1520213 AAATAATCTA
Statistics
Matches: 38, Mismatches: 2, Indels: 16
0.68 0.04 0.29
Matches are distributed among these distances:
11 8 0.21
13 1 0.03
14 3 0.08
15 21 0.55
16 3 0.08
17 2 0.05
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (15 bp):
TATTTTATATATTAT
Found at i:1520281 original size:2 final size:2
Alignment explanation
Indices: 1520274--1520306 Score: 52
Period size: 2 Copynumber: 17.5 Consensus size: 2
1520264 TAACTATAAT
1520274 TA TA TA TA -A T- TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1520307 GTATGAAATC
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
1 2 0.07
2 27 0.93
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:1520281 original size:10 final size:10
Alignment explanation
Indices: 1520268--1520303 Score: 54
Period size: 10 Copynumber: 3.4 Consensus size: 10
1520258 TTACATTAAC
1520268 TATAATTATA
1 TATAATTATA
1520278 TATAATTATA
1 TATAATTATA
1520288 TATATATATATA
1 TATA-AT-TATA
1520300 TATA
1 TATA
1520304 TATGTATGAA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 14 0.58
11 2 0.08
12 8 0.33
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (10 bp):
TATAATTATA
Found at i:1521754 original size:10 final size:10
Alignment explanation
Indices: 1521739--1521766 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
1521729 TATTATGTTC
1521739 GTTCGTTTGT
1 GTTCGTTTGT
1521749 GTTCGTTTGT
1 GTTCGTTTGT
1521759 GTTCGTTT
1 GTTCGTTT
1521767 ATCATTTAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.00, C:0.11, G:0.29, T:0.61
Consensus pattern (10 bp):
GTTCGTTTGT
Found at i:1525472 original size:2 final size:2
Alignment explanation
Indices: 1525465--1525490 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
1525455 GCAATTTATC
1525465 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
1525491 GAATTTAAGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1525980 original size:49 final size:49
Alignment explanation
Indices: 1525927--1526109 Score: 185
Period size: 49 Copynumber: 3.7 Consensus size: 49
1525917 AGGGTGTAAT
* * *
1525927 TTTGTTTACTCTTCAATTATTAAAAATTATAAAAT-AGTCAGGGTATTGC
1 TTTGTTGAGTCTTCAATTATTAAAAGTTATAAAATGA-TCAGGGTATTGC
* * * *
1525976 TTTGTTGAGTCATT-GATTATTAAAAGTTACT-AAATGATCAAGATATTAC
1 TTTGTTGAGTC-TTCAATTATTAAAAGTTA-TAAAATGATCAGGGTATTGC
* * *
1526025 TTTGTTGAGTCTTCGATTATTAAAAGTTATGAAATGATCAGTGTATTGC
1 TTTGTTGAGTCTTCAATTATTAAAAGTTATAAAATGATCAGGGTATTGC
* *
1526074 TTTGTTGAGTAC-CCATACTATTAAAAGTTATAAAAT
1 TTTGTTGAGT-CTTCA-ATTATTAAAAGTTATAAAAT
1526110 AGTCACTTGA
Statistics
Matches: 112, Mismatches: 15, Indels: 13
0.80 0.11 0.09
Matches are distributed among these distances:
48 3 0.03
49 86 0.77
50 23 0.21
ACGTcount: A:0.34, C:0.09, G:0.15, T:0.42
Consensus pattern (49 bp):
TTTGTTGAGTCTTCAATTATTAAAAGTTATAAAATGATCAGGGTATTGC
Found at i:1526924 original size:18 final size:18
Alignment explanation
Indices: 1526901--1526935 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
1526891 GTTATAAATT
*
1526901 TAATAAAAATATATATTA
1 TAATAAAAATAAATATTA
*
1526919 TAATAATAATAAATATT
1 TAATAAAAATAAATATT
1526936 TTAAGATATC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (18 bp):
TAATAAAAATAAATATTA
Found at i:1527465 original size:28 final size:29
Alignment explanation
Indices: 1527425--1527479 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 29
1527415 ATGTATCTAG
* * *
1527425 ACCTTTAA-TTTTTGTTTGTTTTGATTTT
1 ACCTTCAAGTTTTAGTTTATTTTGATTTT
1527453 ACCTTCAAGTTTTAGTTTATTTTGATT
1 ACCTTCAAGTTTTAGTTTATTTTGATT
1527480 ATGTCCCTCT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
28 7 0.30
29 16 0.70
ACGTcount: A:0.18, C:0.09, G:0.11, T:0.62
Consensus pattern (29 bp):
ACCTTCAAGTTTTAGTTTATTTTGATTTT
Found at i:1535856 original size:25 final size:25
Alignment explanation
Indices: 1535825--1535874 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
1535815 TGACATAAAT
1535825 TTTAATTAATAATATTTAATT-GAAA
1 TTTAATTAATAATA-TTAATTAGAAA
*
1535850 TTTAATTAATTATATTAATTAGAAA
1 TTTAATTAATAATATTAATTAGAAA
1535875 CATTGTAGAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 6 0.26
25 17 0.74
ACGTcount: A:0.48, C:0.00, G:0.04, T:0.48
Consensus pattern (25 bp):
TTTAATTAATAATATTAATTAGAAA
Found at i:1541573 original size:12 final size:12
Alignment explanation
Indices: 1541558--1541603 Score: 56
Period size: 12 Copynumber: 3.6 Consensus size: 12
1541548 CGGTTTTTTT
*
1541558 ACCGGATAAAAA
1 ACCGGTTAAAAA
1541570 ACCGGTTTGAAAAAA
1 ACCGG-TT--AAAAA
1541585 ACCGGTTAAAAA
1 ACCGGTTAAAAA
1541597 ACCGGTT
1 ACCGGTT
1541604 TTTATCCGGA
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
12 17 0.57
13 1 0.03
14 2 0.07
15 10 0.33
ACGTcount: A:0.46, C:0.17, G:0.20, T:0.17
Consensus pattern (12 bp):
ACCGGTTAAAAA
Found at i:1541585 original size:15 final size:13
Alignment explanation
Indices: 1541564--1541604 Score: 57
Period size: 12 Copynumber: 3.1 Consensus size: 13
1541554 TTTTACCGGA
1541564 TAAAAAACCGGTT
1 TAAAAAACCGGTT
1541577 TGAAAAAAACCGG-T
1 T--AAAAAACCGGTT
1541591 TAAAAAACCGGTT
1 TAAAAAACCGGTT
1541604 T
1 T
1541605 TTATCCGGAA
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
12 10 0.40
13 3 0.12
14 2 0.08
15 10 0.40
ACGTcount: A:0.46, C:0.15, G:0.17, T:0.22
Consensus pattern (13 bp):
TAAAAAACCGGTT
Found at i:1543921 original size:21 final size:21
Alignment explanation
Indices: 1543897--1543936 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
1543887 TTTATTTTAT
1543897 AACTTTATTTCAATTATCGTA
1 AACTTTATTTCAATTATCGTA
*
1543918 AACTTTGTTTCAATTATCG
1 AACTTTATTTCAATTATCG
1543937 AACTTGAAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.30, C:0.15, G:0.07, T:0.47
Consensus pattern (21 bp):
AACTTTATTTCAATTATCGTA
Found at i:1543988 original size:33 final size:33
Alignment explanation
Indices: 1543931--1544028 Score: 155
Period size: 33 Copynumber: 3.0 Consensus size: 33
1543921 TTTGTTTCAA
1543931 TTATCGAACTT-GAAG-TTTTAAGTATTTGAAT
1 TTATCGAACTTGGAAGTTTTTAAGTATTTGAAT
1543962 TTATCGAACTTGGAAGTTTTTAAGTATTTGAAT
1 TTATCGAACTTGGAAGTTTTTAAGTATTTGAAT
* * *
1543995 TTATCAAACTTGGAAGTATTTAAGTATTTCAAT
1 TTATCGAACTTGGAAGTTTTTAAGTATTTGAAT
1544028 T
1 T
1544029 ATGTTGAGTT
Statistics
Matches: 62, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
31 11 0.18
32 4 0.06
33 47 0.76
ACGTcount: A:0.33, C:0.07, G:0.15, T:0.45
Consensus pattern (33 bp):
TTATCGAACTTGGAAGTTTTTAAGTATTTGAAT
Found at i:1544057 original size:13 final size:13
Alignment explanation
Indices: 1544014--1544068 Score: 58
Period size: 13 Copynumber: 4.2 Consensus size: 13
1544004 TTGGAAGTAT
1544014 TTAAGTATTTCAA
1 TTAAGTATTTCAA
* *
1544027 TTATGTTGAGTT-AA
1 TTAAG-T-ATTTCAA
1544041 TTAAGTATTTCAA
1 TTAAGTATTTCAA
*
1544054 TTAAGTATTTGAA
1 TTAAGTATTTCAA
1544067 TT
1 TT
1544069 TATCGAACTT
Statistics
Matches: 34, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
12 3 0.09
13 21 0.62
14 7 0.21
15 3 0.09
ACGTcount: A:0.35, C:0.04, G:0.13, T:0.49
Consensus pattern (13 bp):
TTAAGTATTTCAA
Found at i:1544495 original size:15 final size:15
Alignment explanation
Indices: 1544465--1544521 Score: 60
Period size: 15 Copynumber: 3.7 Consensus size: 15
1544455 ATCTGGAATA
* *
1544465 TTAAAATCGGTTTTT
1 TTAAAACCGATTTTT
*
1544480 TTATAACCGATTTTT
1 TTAAAACCGATTTTT
*
1544495 TAAAAAAACCGATTTTT
1 T--TAAAACCGATTTTT
1544512 TTAAAACCGA
1 TTAAAACCGA
1544522 AACCGGTTAC
Statistics
Matches: 34, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
15 21 0.62
17 13 0.38
ACGTcount: A:0.37, C:0.12, G:0.09, T:0.42
Consensus pattern (15 bp):
TTAAAACCGATTTTT
Found at i:1544504 original size:17 final size:18
Alignment explanation
Indices: 1544484--1544517 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
1544474 GTTTTTTTAT
1544484 AACCGA-TTTTTTAAAAA
1 AACCGATTTTTTTAAAAA
1544501 AACCGATTTTTTTAAAA
1 AACCGATTTTTTTAAAA
1544518 CCGAAACCGG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.44, C:0.12, G:0.06, T:0.38
Consensus pattern (18 bp):
AACCGATTTTTTTAAAAA
Found at i:1544636 original size:15 final size:17
Alignment explanation
Indices: 1544610--1544641 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
1544600 TTCTATGGGA
1544610 AAAAACCGGAT-CGGAT
1 AAAAACCGGATCCGGAT
1544626 AAAAACC-GATCCGGAT
1 AAAAACCGGATCCGGAT
1544642 CGGATTGAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 3 0.20
16 12 0.80
ACGTcount: A:0.44, C:0.22, G:0.22, T:0.12
Consensus pattern (17 bp):
AAAAACCGGATCCGGAT
Found at i:1545295 original size:39 final size:39
Alignment explanation
Indices: 1545252--1545328 Score: 145
Period size: 39 Copynumber: 2.0 Consensus size: 39
1545242 GTAAGGAACC
*
1545252 CCCAAAATATATAGACATCAATGGGGGTATTATCAGTTT
1 CCCAAAATATATAGACATCAATGGGGGTATTACCAGTTT
1545291 CCCAAAATATATAGACATCAATGGGGGTATTACCAGTT
1 CCCAAAATATATAGACATCAATGGGGGTATTACCAGTT
1545329 GGAGGGTAAG
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.36, C:0.17, G:0.18, T:0.29
Consensus pattern (39 bp):
CCCAAAATATATAGACATCAATGGGGGTATTACCAGTTT
Found at i:1551921 original size:102 final size:100
Alignment explanation
Indices: 1551757--1551955 Score: 276
Period size: 102 Copynumber: 2.0 Consensus size: 100
1551747 GCTTCTAGAG
* *
1551757 CTTTCGTTATCTCTTAAAAGTTTAAGAGTTTTGTAGGTTGGCGTGTCCCACTCTAATTTTTTTTA
1 CTTTCGTTATCTCTTAAAAGTTTAAGAGTTTTGTAGGTGGGCATGTCCCACTCTAA-TTTTTTTA
1551822 TTTCTTTATATAATTTTTAAAATATAATTTTAAAGGAA
65 TTTC-TT-TATAATTTTTAAAATATAATTTTAAAGGAA
* * * *
1551860 CTTTC-TTATTTCTTAAAAGTTTAAAGAGTTTTGTGGGTGGGTCATGTCTCACTTTAA-TTTTTT
1 CTTTCGTTATCTCTTAAAAGTTT-AAGAGTTTTGTAGGTGGG-CATGTCCCACTCTAATTTTTTT
*
1551923 ATTTCTTTATAATTTTTTAAATATAATTTTAAA
64 ATTTCTTTATAATTTTTAAAATATAATTTTAAA
1551956 AAGAGAAAAT
Statistics
Matches: 87, Mismatches: 7, Indels: 7
0.86 0.07 0.07
Matches are distributed among these distances:
100 25 0.29
101 2 0.02
102 27 0.31
103 21 0.24
104 12 0.14
ACGTcount: A:0.28, C:0.10, G:0.12, T:0.51
Consensus pattern (100 bp):
CTTTCGTTATCTCTTAAAAGTTTAAGAGTTTTGTAGGTGGGCATGTCCCACTCTAATTTTTTTAT
TTCTTTATAATTTTTAAAATATAATTTTAAAGGAA
Found at i:1552469 original size:6 final size:6
Alignment explanation
Indices: 1552443--1552491 Score: 68
Period size: 6 Copynumber: 8.7 Consensus size: 6
1552433 TCTCGTCTCA
*
1552443 GGTCG- GGTCG- GGTCG- GGTCGT GGTCGT GGTCGT GGTCTT GGTCGT
1 GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT
1552488 GGTC
1 GGTC
1552492 ATACGTGTCT
Statistics
Matches: 41, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
5 15 0.37
6 26 0.63
ACGTcount: A:0.00, C:0.18, G:0.51, T:0.31
Consensus pattern (6 bp):
GGTCGT
Found at i:1553280 original size:13 final size:13
Alignment explanation
Indices: 1553247--1553280 Score: 50
Period size: 14 Copynumber: 2.5 Consensus size: 13
1553237 GAAAATACTT
*
1553247 TTTAAAAGTGTAT
1 TTTAAAAGTGTAA
1553260 TTTCAAAAGTGTAA
1 TTT-AAAAGTGTAA
1553274 TTTAAAA
1 TTTAAAA
1553281 CTTAACTCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
13 7 0.37
14 12 0.63
ACGTcount: A:0.44, C:0.03, G:0.12, T:0.41
Consensus pattern (13 bp):
TTTAAAAGTGTAA
Found at i:1556152 original size:2 final size:2
Alignment explanation
Indices: 1556145--1556174 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
1556135 CTAAAGCTAA
1556145 AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1556175 AATTTCGGTT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 26 0.96
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1556886 original size:10 final size:10
Alignment explanation
Indices: 1556858--1556896 Score: 51
Period size: 10 Copynumber: 3.9 Consensus size: 10
1556848 ATGTTCGTTC
*
1556858 ATTTATGTTC
1 ATTTATGTTT
* *
1556868 GTTTTTGTTT
1 ATTTATGTTT
1556878 ATTTATGTTT
1 ATTTATGTTT
1556888 ATTTATGTT
1 ATTTATGTT
1556897 CGCGTACTTT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
10 24 1.00
ACGTcount: A:0.15, C:0.03, G:0.13, T:0.69
Consensus pattern (10 bp):
ATTTATGTTT
Found at i:1556896 original size:20 final size:20
Alignment explanation
Indices: 1556854--1556897 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 20
1556844 TAATATGTTC
** *
1556854 GTTCATTTATGTTCGTTTTT
1 GTTCATTTATGTTTATTTAT
*
1556874 GTTTATTTATGTTTATTTAT
1 GTTCATTTATGTTTATTTAT
1556894 GTTC
1 GTTC
1556898 GCGTACTTTC
Statistics
Matches: 19, Mismatches: 5, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.14, C:0.07, G:0.14, T:0.66
Consensus pattern (20 bp):
GTTCATTTATGTTTATTTAT
Found at i:1556997 original size:22 final size:24
Alignment explanation
Indices: 1556962--1557009 Score: 64
Period size: 22 Copynumber: 2.1 Consensus size: 24
1556952 ACACATTTAA
1556962 AATATTAAGACCCAATAA-ATTTT
1 AATATTAAGACCCAATAATATTTT
* *
1556985 AATA-TAATACCCATTAATATTTT
1 AATATTAAGACCCAATAATATTTT
1557008 AA
1 AA
1557010 AATTCAATTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
22 11 0.50
23 11 0.50
ACGTcount: A:0.48, C:0.12, G:0.02, T:0.38
Consensus pattern (24 bp):
AATATTAAGACCCAATAATATTTT
Found at i:1557178 original size:23 final size:23
Alignment explanation
Indices: 1557144--1557189 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
1557134 GTTTGTTCGT
1557144 TTGTGTTCGTTTACGTCCGTTTA
1 TTGTGTTCGTTTACGTCCGTTTA
* * *
1557167 TTGTGTTTGTTTATGTTCGTTTA
1 TTGTGTTCGTTTACGTCCGTTTA
1557190 CATCCGTTCG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.09, C:0.11, G:0.22, T:0.59
Consensus pattern (23 bp):
TTGTGTTCGTTTACGTCCGTTTA
Found at i:1562517 original size:15 final size:15
Alignment explanation
Indices: 1562478--1562517 Score: 53
Period size: 15 Copynumber: 2.6 Consensus size: 15
1562468 TAGTATTTTA
1562478 TAATTTATATTATTAT
1 TAATTTAT-TTATTAT
*
1562494 TAATATATTTATTAT
1 TAATTTATTTATTAT
*
1562509 TATTTTATT
1 TAATTTATT
1562518 CTTATCATTC
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
15 14 0.67
16 7 0.33
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (15 bp):
TAATTTATTTATTAT
Found at i:1562655 original size:23 final size:23
Alignment explanation
Indices: 1562600--1562657 Score: 66
Period size: 23 Copynumber: 2.5 Consensus size: 23
1562590 TTAATTGATG
*
1562600 TTATAATTAATTTTAAGATTCGTTC
1 TTATAATTAA-TTTAAGATTC-TTA
1562625 TTAT-ATTAATTTAAGATT-TATA
1 TTATAATTAATTTAAGATTCT-TA
1562647 TTATAATTAAT
1 TTATAATTAAT
1562658 ATACTTTAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
21 1 0.03
22 5 0.17
23 15 0.50
24 5 0.17
25 4 0.13
ACGTcount: A:0.38, C:0.03, G:0.05, T:0.53
Consensus pattern (23 bp):
TTATAATTAATTTAAGATTCTTA
Found at i:1563253 original size:112 final size:112
Alignment explanation
Indices: 1563056--1563629 Score: 1008
Period size: 112 Copynumber: 5.1 Consensus size: 112
1563046 TTGTCGGTTT
* * * *
1563056 GTGTCGATACTTTATAAAAATATATTGATCCATAACAATATAACATGTAAAAAAATAACAAAACC
1 GTGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAACAGGTAAAAAAATGACAAAACC
*
1563121 GGTCTATAAATGACAAAACAGGTAAAGTGCTACCGGATATATTGAAA
66 GGTCTATAAATGACAAAACAGGTAAAGCGCTACCGGATATATTGAAA
* *
1563168 GTGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAATAGGTAAAAAAATAACAAAACC
1 GTGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAACAGGTAAAAAAATGACAAAACC
*
1563233 GGTATATAAATGACAAAACAGGTAAAGCGCTACCGGATATATTGAAA
66 GGTCTATAAATGACAAAACAGGTAAAGCGCTACCGGATATATTGAAA
*
1563280 GTGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAATAGGTAAAAAAATGACAAAACC
1 GTGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAACAGGTAAAAAAATGACAAAACC
*
1563345 GGTATATAAATGACAAAACAGGTAAAGCGCTACCGGATATATTGAAA
66 GGTCTATAAATGACAAAACAGGTAAAGCGCTACCGGATATATTGAAA
*
1563392 GTGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAACAGATAAAAAAATGACAAAACC
1 GTGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAACAGGTAAAAAAATGACAAAACC
1563457 GGTCTATAAATGACAAAACAGGTAAAGCGCTACCGGATATATTGAAA
66 GGTCTATAAATGACAAAACAGGTAAAGCGCTACCGGATATATTGAAA
1563504 GTGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAACAGGT-AAAAAATGACAAAACC
1 GTGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAACAGGTAAAAAAATGACAAAACC
* *
1563568 GGTCTATAAATGACAAAACAAGTAAAGCGCTACCGGATATGTTGATAA
66 GGTCTATAAATGACAAAACAGGTAAAGCGCTACCGGATATATTGA-AA
1563616 -TGTCGATACTTTAT
1 GTGTCGATACTTTAT
1563630 TATAAGTATC
Statistics
Matches: 448, Mismatches: 13, Indels: 3
0.97 0.03 0.01
Matches are distributed among these distances:
111 73 0.16
112 375 0.84
ACGTcount: A:0.46, C:0.14, G:0.15, T:0.25
Consensus pattern (112 bp):
GTGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAACAGGTAAAAAAATGACAAAACC
GGTCTATAAATGACAAAACAGGTAAAGCGCTACCGGATATATTGAAA
Found at i:1563859 original size:183 final size:182
Alignment explanation
Indices: 1563501--1563955 Score: 741
Period size: 183 Copynumber: 2.5 Consensus size: 182
1563491 GGATATATTG
1563501 AAAGTGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAACAGGTAAAAA-ATGACAAA
1 AAAGTGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAACAGGTAAAAATATGACAAA
** ** ** * *
1563565 ACCGGTCTATAAATGACAAAACAAGTAAAGCGCTACCGGATATGTTGATAATGTCGATACTTTAT
66 ACCGGTCTCGAAATGACAAAACCGGTAAAGAACTACCGAATATGTTGAAAATGTCGATACTTTAT
* * *
1563630 TATAAGTATCGACACTTTTTGAATTTAAAAGAGAAGAAGTTATAGCGCTAAT
131 TATAAGTATCGACACTTTTGGAATTTAAAAGAAAAGAAGTTATAGCGCCAAT
1563682 AAAGTGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAACAGGTAAAAATATGACAAA
1 AAAGTGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAACAGGTAAAAATATGACAAA
* *
1563747 ACCGATCTCGAAATGACAAAACCGGTAAAGAACTATCGAATATGTTGAAAAGTGTCGATACTTTA
66 ACCGGTCTCGAAATGACAAAACCGGTAAAGAACTACCGAATATGTTGAAAA-TGTCGATACTTTA
*
1563812 TTATAAGTATCGACACTTTTGGAATTTAAAAGAAAATAAGTTATAGCGCCAAT
130 TTATAAGTATCGACACTTTTGGAATTTAAAAGAAAAGAAGTTATAGCGCCAAT
*
1563865 AAAGTGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAACAAGTAAAAATATGACAAA
1 AAAGTGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAACAGGTAAAAATATGACAAA
* *
1563930 ATCGGTCTCGAAATGACAAAATCGGT
66 ACCGGTCTCGAAATGACAAAACCGGT
1563956 GGTAAAAAAG
Statistics
Matches: 254, Mismatches: 18, Indels: 2
0.93 0.07 0.01
Matches are distributed among these distances:
181 56 0.22
182 49 0.19
183 149 0.59
ACGTcount: A:0.44, C:0.14, G:0.15, T:0.27
Consensus pattern (182 bp):
AAAGTGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAACAGGTAAAAATATGACAAA
ACCGGTCTCGAAATGACAAAACCGGTAAAGAACTACCGAATATGTTGAAAATGTCGATACTTTAT
TATAAGTATCGACACTTTTGGAATTTAAAAGAAAAGAAGTTATAGCGCCAAT
Found at i:1564480 original size:23 final size:23
Alignment explanation
Indices: 1564397--1564468 Score: 126
Period size: 23 Copynumber: 3.1 Consensus size: 23
1564387 ATATAAACAT
*
1564397 TACCTATTACCTTATATAAGCGC
1 TACCTATTACATTATATAAGCGC
*
1564420 TACCTATTACATTATATAAGCGT
1 TACCTATTACATTATATAAGCGC
1564443 TACCTATTACATTATATAAGCGC
1 TACCTATTACATTATATAAGCGC
1564466 TAC
1 TAC
1564469 ATAATATATT
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 46 1.00
ACGTcount: A:0.33, C:0.22, G:0.08, T:0.36
Consensus pattern (23 bp):
TACCTATTACATTATATAAGCGC
Found at i:1564480 original size:46 final size:46
Alignment explanation
Indices: 1564387--1564480 Score: 134
Period size: 46 Copynumber: 2.0 Consensus size: 46
1564377 AAATAGGTTA
* * *
1564387 ATATAAACATTACCTATTACCTTATATAAGCGCTACCTATTACATT
1 ATATAAACATTACCTATTACATTATATAAGCGCTACATAATACATT
* * *
1564433 ATATAAGCGTTACCTATTACATTATATAAGCGCTACATAATATATT
1 ATATAAACATTACCTATTACATTATATAAGCGCTACATAATACATT
1564479 AT
1 AT
1564481 TGTACTTGAT
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
46 42 1.00
ACGTcount: A:0.38, C:0.18, G:0.06, T:0.37
Consensus pattern (46 bp):
ATATAAACATTACCTATTACATTATATAAGCGCTACATAATACATT
Found at i:1568298 original size:42 final size:42
Alignment explanation
Indices: 1568181--1568300 Score: 222
Period size: 42 Copynumber: 2.9 Consensus size: 42
1568171 TTTCCCCGAA
* *
1568181 TTCCCGTGTTTGTTTCACGTAATTCGTTTTCCGAAAAATGTT
1 TTCCCGTGTTTGTTTCACGTAATTCGTTTTCCGGAAAACGTT
1568223 TTCCCGTGTTTGTTTCACGTAATTCGTTTTCCGGAAAACGTT
1 TTCCCGTGTTTGTTTCACGTAATTCGTTTTCCGGAAAACGTT
1568265 TTCCCGTGTTTGTTTCACGTAATTCGTTTTCCGGAA
1 TTCCCGTGTTTGTTTCACGTAATTCGTTTTCCGGAA
1568301 TGTAATTCAT
Statistics
Matches: 76, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
42 76 1.00
ACGTcount: A:0.17, C:0.21, G:0.18, T:0.44
Consensus pattern (42 bp):
TTCCCGTGTTTGTTTCACGTAATTCGTTTTCCGGAAAACGTT
Found at i:1568510 original size:24 final size:23
Alignment explanation
Indices: 1568467--1568540 Score: 73
Period size: 22 Copynumber: 3.1 Consensus size: 23
1568457 TAATTTCATT
1568467 TTTATCAAAATATTAATTATTAAAATA
1 TTTAT-AAAATA-TAATTATT--AATA
*
1568494 TTTA-AAAATATATTTATTAATA
1 TTTATAAAATATAATTATTAATA
1568516 TTTATAATAATATAA-TATT-ATA
1 TTTATAA-AATATAATTATTAATA
1568538 TTT
1 TTT
1568541 TTAATATTAT
Statistics
Matches: 43, Mismatches: 2, Indels: 9
0.80 0.04 0.17
Matches are distributed among these distances:
22 14 0.33
23 6 0.14
24 13 0.30
25 6 0.14
27 4 0.09
ACGTcount: A:0.49, C:0.01, G:0.00, T:0.50
Consensus pattern (23 bp):
TTTATAAAATATAATTATTAATA
Found at i:1568538 original size:22 final size:23
Alignment explanation
Indices: 1568490--1568554 Score: 73
Period size: 22 Copynumber: 2.9 Consensus size: 23
1568480 TAATTATTAA
*
1568490 AATATTTA-AA-AATATATTTATT
1 AATATTTATAATAATATA-ATATT
1568512 AATATTTATAATAATATAATATT
1 AATATTTATAATAATATAATATT
* *
1568535 -ATATTTTTAATATTATAATA
1 AATATTTATAATAATATAATA
1568555 AAATAATCAA
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
22 26 0.68
23 6 0.16
24 6 0.16
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (23 bp):
AATATTTATAATAATATAATATT
Found at i:1568585 original size:61 final size:64
Alignment explanation
Indices: 1568518--1568672 Score: 155
Period size: 61 Copynumber: 2.5 Consensus size: 64
1568508 TATTAATATT
1568518 TATAATAATATAATATTATATTTTTAATATTA-TAATA-A-AATAATCAATTATAT-TATAATAA
1 TATAATAATATAATATTATATTTTTAATATTATTAATATATAATAAT-AATTATATATATAATAA
* * ** *
1568579 TATAAT-ATAAAGATATTATATTTTT-ATTTTAATTAATATATAATAATTTTTATATATTTAATA
1 TATAATAATATA-ATATTATATTTTTAATATT-ATTAATATATAATAATAATTATATATATAATA
1568642 A
64 A
* * *
1568643 T-GAATAATATTAT-TTATATATTTAATATTA
1 TATAATAATATAATATTATATTTTTAATATTA
1568673 ATATAATACT
Statistics
Matches: 76, Mismatches: 10, Indels: 15
0.75 0.10 0.15
Matches are distributed among these distances:
60 8 0.11
61 20 0.26
62 15 0.20
63 16 0.21
64 17 0.22
ACGTcount: A:0.48, C:0.01, G:0.01, T:0.50
Consensus pattern (64 bp):
TATAATAATATAATATTATATTTTTAATATTATTAATATATAATAATAATTATATATATAATAA
Found at i:1568628 original size:25 final size:25
Alignment explanation
Indices: 1568591--1568675 Score: 59
Period size: 25 Copynumber: 3.3 Consensus size: 25
1568581 TAATATAAAG
* *
1568591 ATATTATATTTTTATTTTAATTAAT
1 ATATAATAATTTTATTTTAATTAAT
* *
1568616 ATATAATAATTTT-TATATATTTAAT
1 ATATAATAATTTTAT-TTTAATTAAT
*
1568641 A-ATGAATAATATTATTTATATATTTAAT
1 ATAT-AATAATTTTATTT-TA-A-TTAAT
1568669 AT-TAATA
1 ATATAATA
1568676 TAATACTATT
Statistics
Matches: 46, Mismatches: 7, Indels: 12
0.71 0.11 0.18
Matches are distributed among these distances:
24 3 0.07
25 29 0.63
26 3 0.07
27 4 0.09
28 7 0.15
ACGTcount: A:0.44, C:0.00, G:0.01, T:0.55
Consensus pattern (25 bp):
ATATAATAATTTTATTTTAATTAAT
Found at i:1568658 original size:28 final size:27
Alignment explanation
Indices: 1568597--1568729 Score: 101
Period size: 28 Copynumber: 5.1 Consensus size: 27
1568587 AAAGATATTA
*
1568597 TATTTTTAT-TTTAATTAATATATAATAAT
1 TATTTATATATTTAA-TAATA-ATAAT-AT
1568626 T-TTTATATATTTAATAATGAATAATAT
1 TATTTATATATTTAATAAT-AATAATAT
1568653 TATTTATATATTTAAT-AT--TAATA-
1 TATTTATATATTTAATAATAATAATAT
1568676 TA---ATACTATTTAATAATAAATAA-AT
1 TATTTATA-TATTTAATAAT-AATAATAT
1568701 TATTT-TAATATTTTAA-AATAATAATAT
1 TATTTAT-ATA-TTTAATAATAATAATAT
1568728 TA
1 TA
1568730 AGTTTTATGA
Statistics
Matches: 88, Mismatches: 1, Indels: 32
0.73 0.01 0.26
Matches are distributed among these distances:
20 3 0.03
21 8 0.09
22 2 0.02
23 2 0.02
24 6 0.07
25 5 0.06
26 5 0.06
27 15 0.17
28 35 0.40
29 7 0.08
ACGTcount: A:0.47, C:0.01, G:0.01, T:0.52
Consensus pattern (27 bp):
TATTTATATATTTAATAATAATAATAT
Found at i:1568685 original size:21 final size:19
Alignment explanation
Indices: 1568661--1568712 Score: 59
Period size: 20 Copynumber: 2.6 Consensus size: 19
1568651 ATTATTTATA
1568661 TATTTAATATTAATATAATAC
1 TATTTAATATTAA-ATAA-AC
* *
1568682 TATTTAATAATAAATAAAT
1 TATTTAATATTAAATAAAC
1568701 TATTTTAATATT
1 TA-TTTAATATT
1568713 TTAAAATAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
19 3 0.11
20 12 0.44
21 12 0.44
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (19 bp):
TATTTAATATTAAATAAAC
Found at i:1568698 original size:49 final size:50
Alignment explanation
Indices: 1568633--1568769 Score: 151
Period size: 48 Copynumber: 2.8 Consensus size: 50
1568623 AATTTTTATA
*
1568633 TATTTAATAATGAATAATATTATTTATATATTTAATATTAAT-ATAATAC
1 TATTTAATAATAAATAATATTATTTATATATTTAATATTAATAATAATAC
* *
1568682 TATTTAATAATAAATAA-ATTATTT-TAATATTT--TA-AAATAATAATAT
1 TATTTAATAATAAATAATATTATTTAT-ATATTTAATATTAATAATAATAC
* *
1568728 TAAGTTTTATGATAAATAATATTATTTATTATATTTAATATT
1 T-A-TTTAATAATAAATAATATTATTTA-TATATTTAATATT
1568770 TGTAATAAAT
Statistics
Matches: 72, Mismatches: 6, Indels: 16
0.77 0.06 0.17
Matches are distributed among these distances:
45 3 0.04
46 9 0.12
47 2 0.03
48 26 0.36
49 23 0.32
50 6 0.08
51 1 0.01
52 2 0.03
ACGTcount: A:0.47, C:0.01, G:0.02, T:0.50
Consensus pattern (50 bp):
TATTTAATAATAAATAATATTATTTATATATTTAATATTAATAATAATAC
Found at i:1572296 original size:23 final size:23
Alignment explanation
Indices: 1572261--1572317 Score: 87
Period size: 23 Copynumber: 2.5 Consensus size: 23
1572251 ATTAAGTGTA
* *
1572261 ATAACATATTAGGTAGTGCTTAT
1 ATAATATAATAGGTAGTGCTTAT
1572284 ATAATATAATAGGTAGTGCTTAT
1 ATAATATAATAGGTAGTGCTTAT
*
1572307 ATAATAAAATA
1 ATAATATAATA
1572318 TGTATTTAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 31 1.00
ACGTcount: A:0.44, C:0.05, G:0.14, T:0.37
Consensus pattern (23 bp):
ATAATATAATAGGTAGTGCTTAT
Found at i:1572399 original size:23 final size:23
Alignment explanation
Indices: 1572352--1572404 Score: 70
Period size: 23 Copynumber: 2.3 Consensus size: 23
1572342 AATAACATAT
* **
1572352 TAAGTAGCGCTTATATAATGTAA
1 TAAGTATCGCTTATATAATAAAA
*
1572375 TAGGTATCGCTTATATAATAAAA
1 TAAGTATCGCTTATATAATAAAA
1572398 TAAGTAT
1 TAAGTAT
1572405 TTAACCGGAA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.42, C:0.08, G:0.15, T:0.36
Consensus pattern (23 bp):
TAAGTATCGCTTATATAATAAAA
Found at i:1572448 original size:87 final size:86
Alignment explanation
Indices: 1572229--1572477 Score: 339
Period size: 82 Copynumber: 2.9 Consensus size: 86
1572219 TGATTATGTT
* ** * *
1572229 ATAA-TATTTAATCGAAAATATTATTAAGTGTAATAACATATTAGGTAGTGCTTATATAATATAA
1 ATAAGTATTTAATCGGAAATATTA-TAAGTACAATAACATATTAGGTAGCGCTTATATAATGTAA
1572293 TAGGTAGT-GCTTATATAATAAA
65 TAGGTA-TCGCTTATATAATAAA
* *
1572315 ATATGTATTTAATCGGAAATA-T-T-A-TACAATAACATATTAAGTAGCGCTTATATAATGTAAT
1 ATAAGTATTTAATCGGAAATATTATAAGTACAATAACATATTAGGTAGCGCTTATATAATGTAAT
1572376 AGGTATCGCTTATATAATAAA
66 AGGTATCGCTTATATAATAAA
*
1572397 ATAAGTATTTAACCGGAAATATTATCAAGTACAATAACATATTAGGTAGCGCTTATATAATGTAA
1 ATAAGTATTTAATCGGAAATATTAT-AAGTACAATAACATATTAGGTAGCGCTTATATAATGTAA
* *
1572462 TAGGTAGCGTTTATAT
65 TAGGTATCGCTTATAT
1572478 TGACCTATTT
Statistics
Matches: 144, Mismatches: 12, Indels: 13
0.85 0.07 0.08
Matches are distributed among these distances:
81 1 0.01
82 70 0.49
83 2 0.01
84 2 0.01
86 5 0.03
87 64 0.44
ACGTcount: A:0.42, C:0.08, G:0.14, T:0.37
Consensus pattern (86 bp):
ATAAGTATTTAATCGGAAATATTATAAGTACAATAACATATTAGGTAGCGCTTATATAATGTAAT
AGGTATCGCTTATATAATAAA
Found at i:1573145 original size:14 final size:14
Alignment explanation
Indices: 1573126--1573160 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
1573116 ATTATAGATG
*
1573126 TAATATTTTAATTA
1 TAATATTTTAATAA
1573140 TAATATTTTAATAA
1 TAATATTTTAATAA
1573154 TAATATT
1 TAATATT
1573161 GACATAAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (14 bp):
TAATATTTTAATAA
Found at i:1573884 original size:42 final size:43
Alignment explanation
Indices: 1573816--1573899 Score: 100
Period size: 42 Copynumber: 2.0 Consensus size: 43
1573806 CTCTCATTAT
* * *
1573816 AATATAATTAATGATATATTATTTTTATTATAATA-AATAATA
1 AATATAATTAATAATATATTATTTTTAATAAAATATAATAATA
* *
1573858 AATATAATTTATAATA-ATTTTATTTTAATAAAATATAATAAT
1 AATATAATTAATAATATATTAT-TTTTAATAAAATATAATAAT
1573900 CATAATTTTT
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
41 4 0.11
42 25 0.71
43 6 0.17
ACGTcount: A:0.51, C:0.00, G:0.01, T:0.48
Consensus pattern (43 bp):
AATATAATTAATAATATATTATTTTTAATAAAATATAATAATA
Found at i:1573905 original size:30 final size:31
Alignment explanation
Indices: 1573853--1573934 Score: 80
Period size: 30 Copynumber: 2.6 Consensus size: 31
1573843 TTATAATAAA
*
1573853 TAAT-AAATATAATTTATAATAATTTTATT-T
1 TAATAAAATATAATTAATAATAATTTT-TTAT
*
1573883 TAATAAAATATAA-TAATCATAATTTTTTAT
1 TAATAAAATATAATTAATAATAATTTTTTAT
*
1573913 TTATAAAAGTATAGATATAATA
1 TAATAAAA-TATA-AT-TAATA
1573935 TTTTAATAAT
Statistics
Matches: 42, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
29 2 0.05
30 23 0.55
31 12 0.29
32 1 0.02
34 4 0.10
ACGTcount: A:0.50, C:0.01, G:0.02, T:0.46
Consensus pattern (31 bp):
TAATAAAATATAATTAATAATAATTTTTTAT
Found at i:1574418 original size:21 final size:21
Alignment explanation
Indices: 1574392--1574448 Score: 107
Period size: 20 Copynumber: 2.8 Consensus size: 21
1574382 AATGTCCAAC
1574392 AATAACAAAACCGGTAAAAAA
1 AATAACAAAACCGGTAAAAAA
1574413 AATAACAAAACCGGT-AAAAA
1 AATAACAAAACCGGTAAAAAA
1574433 AATAACAAAACCGGTA
1 AATAACAAAACCGGTA
1574449 GCGCTTTACC
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
20 20 0.57
21 15 0.43
ACGTcount: A:0.63, C:0.16, G:0.11, T:0.11
Consensus pattern (21 bp):
AATAACAAAACCGGTAAAAAA
Found at i:1574710 original size:31 final size:30
Alignment explanation
Indices: 1574683--1574754 Score: 78
Period size: 30 Copynumber: 2.4 Consensus size: 30
1574673 TTTATAATTT
1574683 ATAATAATTTTAT-TTTAATAAAATATAATA
1 ATAATAATTTTATATTTAA-AAAATATAATA
* *
1574713 ATCATAATTTTTTATTTAAAAAATTATAGAT-
1 ATAATAATTTTATATTTAAAAAA-TATA-ATA
1574744 ATAAT-ATTTTA
1 ATAATAATTTTA
1574755 ATAATAATAT
Statistics
Matches: 35, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
30 20 0.57
31 13 0.37
32 2 0.06
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.49
Consensus pattern (30 bp):
ATAATAATTTTATATTTAAAAAATATAATA
Found at i:1574753 original size:28 final size:31
Alignment explanation
Indices: 1574682--1574754 Score: 82
Period size: 28 Copynumber: 2.4 Consensus size: 31
1574672 ATTTATAATT
1574682 TATAATAATTTTATTTTAATAAAATATAATAA
1 TATAAT-ATTTTATTTTAATAAAATATAATAA
*
1574714 TCATAATTTTTTA-TTTAA-AAAAT-T-ATAGA
1 T-ATAATATTTTATTTTAATAAAATATAATA-A
1574743 TATAATATTTTA
1 TATAATATTTTA
1574755 ATAATAATAT
Statistics
Matches: 37, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
28 13 0.35
29 3 0.08
30 5 0.14
31 5 0.14
32 6 0.16
33 5 0.14
ACGTcount: A:0.48, C:0.01, G:0.01, T:0.49
Consensus pattern (31 bp):
TATAATATTTTATTTTAATAAAATATAATAA
Found at i:1574804 original size:22 final size:23
Alignment explanation
Indices: 1574772--1574814 Score: 63
Period size: 22 Copynumber: 1.9 Consensus size: 23
1574762 TATTGACATA
1574772 AATATTATTAAATAA-ATTATTCT
1 AATATTATTAAA-AATATTATTCT
1574795 AATATT-TTAAAAATATTATT
1 AATATTATTAAAAATATTATT
1574815 ATTATTTTGT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 2 0.11
22 11 0.58
23 6 0.32
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (23 bp):
AATATTATTAAAAATATTATTCT
Found at i:1575205 original size:786 final size:787
Alignment explanation
Indices: 1572894--1576043 Score: 4524
Period size: 786 Copynumber: 4.0 Consensus size: 787
1572884 CCGATATATT
* * * *
1572894 TATACCGGTTTATATTGTAAATTTATTTATTATATTATAATTATCGGTTTCGATGTAAAATATGT
1 TATACCGG-TTACATTGTAAATTTATCTATTACATTATAATTATCGGTTTCGATGTAACATATGT
1572959 GTCGATACTTTTAGAAAATGTATCGACACATATGTTTAATTATTCTCTCATTATAATATAATTAA
65 GTCGATACTTTTAGAAAATGTATCGACACATATGTTTAATTATTCTCTCATTATAATATAATTAA
* *
1573024 TGATTTATTATTCTTATTATAATAAATAATAAATATAATTTATAATAATTTTATTTAAATAAAAT
130 TGATATATTATTCTTATTATAATAAATAATAAATATAATTTATAATAATTTTATTTTAATAAAAT
*
1573089 ATAATAATCATAA-TTTTTATTTATAAAATTATAGATGTAATATTTTAATTATAATATTTTAATA
195 ATAATAATCATAATTTTTTA-TT-T-AAA--A-A-AT-T-ATA----GA-TATAATATTTTAATA
* * *
1573153 ATAATATTGACATAAATAATATTAAATAATTTATTCTAATATTTAACAAAATAATAATATTATTT
246 ATAATATTGACATAAATAATATTAAATAAATTATTCTAATATTTTA-AAAATAATATTATTATTT
* * *
1573218 TGTTAATAAATAATA-T-TTTTATTGTATTTGATTTTTATAATTATATTGTAATTATGATTATTT
310 TGTTAATAAATAATATTATTTTATTATATTTGATGTTTATAGTTATATTGTAATTATGATTATTT
* * * *
1573281 TTCATCACTTCATTATGATTATTTTTTAAAATTATATTGTAATTATATATAATTTTTTTATTTTT
375 TTCATCACTTCATTATGATTATTTTTTAAAATTATATTATTATT-T-TATTATTTTTTTATTTTA
* * *
1573346 TTATTAGAAAGCTAATATCGAAATAGAAATACCGTGTCCTTTTTTTCATTAGTTATATTGTGGTA
438 TTATTAGAAAGCTAATATCGAAATAGAAATACCATGTACTTTTTTTCATTAGTTATATTGTGGCA
1573411 ACTTACAAACTAAAAAATTAAAATTAATTTGTATAATTTGTGTTTACTAATTTTATCATTAAAAA
503 ACTTACAAACTAAAAAATTAAAATTAATTTGTATAATTTGTGTTTACTAATTTTATCATTAAAAA
* * *
1573476 ATATATTTTTACTGATTTTGTTATTGTTGGGCATAACAAAACCGATAAAAATTACCTAAAACATT
568 ATCTATTTTTACCGGTTTTGTTATTGTTGGGCATAACAAAACCGATAAAAATTACCTAAAACATT
*
1573541 ATTATTTCTACCTAAAACATCAATGTTTTTTAACATTTCCGGTAAAATTCCCAACAATAACAAAA
633 ATTATTTCTACCTAAAACATCAATGTTTTTTAACATTTCCGGTAAAATACCCAACAATAACAAAA
* * * *
1573606 CCGGTAAAAAAATAACAAAACCGGTAGTGCTTTACCGATTTTGTTAAAATAATAATGTTTTCAGT
698 CCGGTAAAAAAATAACAAAACCGGTAGCGCTTTACCGGTTTTGTTAAAATAATGATGTTTTCGGT
* *
1573671 AATTTTTATCGATTTTGTTATTGTTTG
763 AATTTTTACCG-GTTTGTTATTG-TTG
* *
1573698 TATACCGATTACATTGTAAATTTA-CTTATTACATTATAATTATCGGTTTCGATGTAACATATAT
1 TATACCGGTTACATTGTAAATTTATC-TATTACATTATAATTATCGGTTTCGATGTAACATATGT
*
1573762 GTCGATACTTTTAGAAAATGTATCGACACATATGTTTAACTATTCTCTCATTATAATATAATTAA
65 GTCGATACTTTTAGAAAATGTATCGACACATATGTTTAATTATTCTCTCATTATAATATAATTAA
*
1573827 TGATATATTATTTTTATTATAATAAATAATAAATATAATTTATAATAATTTTATTTTAATAAAAT
130 TGATATATTATTCTTATTATAATAAATAATAAATATAATTTATAATAATTTTATTTTAATAAAAT
* *
1573892 ATAATAATCATAATTTTTTATTTATAAAAGTATAGATATAATATTTTAATAATAATATTGACATA
195 ATAATAATCATAATTTTTTATTTAAAAAATTATAGATATAATATTTTAATAATAATATTGACATA
* *
1573957 AATAATATTAAATAAATTATTCTAATATTTTAAAAATAATATTGTTATTTTGTTAAAAAATAATA
260 AATAATATTAAATAAATTATTCTAATATTTTAAAAATAATATTATTATTTTGTTAATAAATAATA
* *
1574022 TTATTTTATTGTATTTGATGTTTATAGATATATTGTAATTATGATTATTTTTCATCACTTCATTA
325 TTATTTTATTATATTTGATGTTTATAGTTATATTGTAATTATGATTATTTTTCATCACTTCATTA
* *
1574087 TGATT-TTTTTTAAATTATATTGAAATTATATATAATTTTTTATTTTTTTATTTTATTATTAGAA
390 TGATTATTTTTT-AA--A-ATT-ATATTAT-TAT--TTTATTATTTTTTTATTTTATTATTAGAA
* * *
1574151 AGCTAATATCGAAATAGAAATACCGTGTATTTTTTTTTCATTAATTATATTGTGGCAACTTACAA
447 AGCTAATATCGAAATAGAAATACCATGTA-CTTTTTTTCATTAGTTATATTGTGGCAACTTACAA
1574216 ACTAAAAAATTAAAATTAATTTGTATAATTTGTGTTTACTAATTTTATCATTAAAAAATCTATTT
511 ACTAAAAAATTAAAATTAATTTGTATAATTTGTGTTTACTAATTTTATCATTAAAAAATCTATTT
* * * *
1574281 TTACCGGTTTTGTTTTTGTTGGGCATAACAAAACCGGTAAAAATTACCAAAAATATTATTATTTC
576 TTACCGGTTTTGTTATTGTTGGGCATAACAAAACCGATAAAAATTACCTAAAACATTATTATTTC
1574346 TACCTAAAACATCAATGTTTTTTAACATTTCCGGTAAATGTCCAACAATAACAAAACCGGTAAAA
641 TACCTAAAACATCAATGTTTTTTAACATTTCC-G-----GT--AA-AAT-AC----CC------A
*
1574411 AAAATAACAAAACCGGTAAAAAAATAACAAAACCGGTAGCGCTTTACCGGTTTTGTTAAAATAAT
686 ACAATAACAAAACCGGTAAAAAAATAACAAAACCGGTAGCGCTTTACCGGTTTTGTTAAAATAAT
1574476 GATGTTTTCGGTAATTTTTACCGGTTTGTTATTGTTG
751 GATGTTTTCGGTAATTTTTACCGGTTTGTTATTGTTG
1574513 TATACCGGTTACATTGTAAATTTATCTATTACATTATAATTATCGGTTTCGATGTAACATATGTG
1 TATACCGGTTACATTGTAAATTTATCTATTACATTATAATTATCGGTTTCGATGTAACATATGTG
* * *
1574578 TCGATACTTTTAGAAAATTTATCGACGCATATGTTTAAATATTCTCTCATTATAATATAATTAAT
66 TCGATACTTTTAGAAAATGTATCGACACATATGTTTAATTATTCTCTCATTATAATATAATTAAT
*
1574643 GATATATTATTCTTATTATAATAAAT-ATAATTTATAATTTATAATAATTTTATTTTAATAAAAT
131 GATATATTATTCTTATTATAATAAATAATAA-ATATAATTTATAATAATTTTATTTTAATAAAAT
1574707 ATAATAATCATAATTTTTTATTTAAAAAATTATAGATATAATATTTTAATAATAATATTGACATA
195 ATAATAATCATAATTTTTTATTTAAAAAATTATAGATATAATATTTTAATAATAATATTGACATA
* *
1574772 AATATTATTAAATAAATTATTCTAATATTTTAAAAATATTATTATTATTTTGTTAATAAATAATA
260 AATAATATTAAATAAATTATTCTAATATTTTAAAAATAATATTATTATTTTGTTAATAAATAATA
* * *
1574837 TTATTTTATTATATTTAATATTTATAGTTATATTGTAATTATGATTATTTTTCATCACTTCATTG
325 TTATTTTATTATATTTGATGTTTATAGTTATATTGTAATTATGATTATTTTTCATCACTTCATTA
* * * *
1574902 TGATTCTTTTTTAAAATTATATT-TTATTTTTTTATTTTTTTGTTTTATTATTAGAAAGTTAATA
390 TGATTATTTTTTAAAATTATATTATTATTTTATTATTTTTTTATTTTATTATTAGAAAGCTAATA
* *
1574966 T-GAAAATAGAAATATCATGTACTTTTTTTCCATTAGTTATATTGTAGCAACTTACAAACTAAAA
455 TCG-AAATAGAAATACCATGTACTTTTTTT-CATTAGTTATATTGTGGCAACTTACAAACTAAAA
* *
1575030 AATTAAAATTAATTTGTATAATTTGTGTTTACTAATTTTATCATTAAAAAATTTATTTTTATCGG
518 AATTAAAATTAATTTGTATAATTTGTGTTTACTAATTTTATCATTAAAAAATCTATTTTTACCGG
* *
1575095 TTTTGTTATTGTTGGGCATAACAAATCCGATAAAAATTACCTAAAACATTATTATTTCTACATAA
583 TTTTGTTATTGTTGGGCATAACAAAACCGATAAAAATTACCTAAAACATTATTATTTCTACCTAA
* * *
1575160 AACATTAATG-TCTTTAACATTTTCGGTAAAATACCCAACAATAACAAAACCGGTAAAAAAATAA
648 AACATCAATGTTTTTTAACATTTCCGGTAAAATACCCAACAATAACAAAACCGGTAAAAAAATAA
* * * *
1575224 CGAAACCGGTAGCGCTTTACCGGTTTTATTAAAATAATGATATTTTCGGTAATTTTTACTGGTTT
713 CAAAACCGGTAGCGCTTTACCGGTTTTGTTAAAATAATGATGTTTTCGGTAATTTTTACCGGTTT
1575289 GTTATTGTTG
778 GTTATTGTTG
* * *
1575299 TATACCAGTTACATTCTAAATTTACCTATTACATTATAATTATCGGTTTCGATGTAACATATGTG
1 TATACCGGTTACATTGTAAATTTATCTATTACATTATAATTATCGGTTTCGATGTAACATATGTG
*
1575364 TCGATACTTTTAGAAAATGTATCGACGCATATGTTTAATTATTCTCTCATTATAATATAATTAAT
66 TCGATACTTTTAGAAAATGTATCGACACATATGTTTAATTATTCTCTCATTATAATATAATTAAT
* *
1575429 GATATATTATTCTTATTATAATAAATAATAAATATAATTTATAATATTTTTGTTTTAATAAAATA
131 GATATATTATTCTTATTATAATAAATAATAAATATAATTTATAATAATTTTATTTTAATAAAATA
* *
1575494 TAATAATCATAATTTTTTATTTATAAAATTATAGAAATAATATTTTAATAATAATATTGACATAA
196 TAATAATCATAATTTTTTATTTAAAAAATTATAGATATAATATTTTAATAATAATATTGACATAA
* *
1575559 ATAATATTAAATAAATTATTCTAATATTTTTAAAATATTATTATTATTTTGTTAATAAATAATAT
261 ATAATATTAAATAAATTATTCTAATATTTTAAAAATAATATTATTATTTTGTTAATAAATAATAT
1575624 TATTTTATTATATTTGATGTTTATAGTTATATTGTAATTATGATTATTTTTCATCACTTCATTAT
326 TATTTTATTATATTTGATGTTTATAGTTATATTGTAATTATGATTATTTTTCATCACTTCATTAT
* * * *
1575689 GATTATTTTTTAAAATTATATT-GTA----ATTA-TATATAATTTT-TTATTAGAAAGCTAATAT
391 GATTATTTTTTAAAATTATATTATTATTTTATTATTTTTTTATTTTATTATTAGAAAGCTAATAT
** * * *
1575747 CGAAATAGAAATATTATAT-CATTTTTTCATTAGTTATATTGTGACAACTTACAAACTAAAAAAT
456 CGAAATAGAAATACCATGTACTTTTTTTCATTAGTTATATTGTGGCAACTTACAAACTAAAAAAT
* * *
1575811 TAAAATTACTTTGTATAA-TT-TGTTTACTAATTTTATCATTAAAAAGTCTATTTTTACCAGTTT
521 TAAAATTAATTTGTATAATTTGTGTTTACTAATTTTATCATTAAAAAATCTATTTTTACCGGTTT
*
1575874 TGTTA----T--G-----------C-----------CC-AAAACATTATTATTTTTACCTAAAAC
586 TGTTATTGTTGGGCATAACAAAACCGATAAAAATTACCTAAAACATTATTATTTCTACCTAAAAC
* *
1575910 ATCAATGTTTTTTAACATTTCCGGTAAAATGCCCAACAATAATAAAACCGGTAAAAAAAATAACA
651 ATCAATGTTTTTTAACATTTCCGGTAAAATACCCAACAATAACAAAACCGGT-AAAAAAATAACA
* * **
1575975 AAACTGATAGCGCTTTACCGGTTTTGTTAAAATAATGATGTTTTCAATAATTTTTACCGGTTTTG
715 AAACCGGTAGCGCTTTACCGGTTTTGTTAAAATAATGATGTTTTCGGTAATTTTTACCGG-TTTG
1576040 TTAT
779 TTAT
1576044 GCACAACAAT
Statistics
Matches: 2167, Mismatches: 136, Indels: 140
0.89 0.06 0.06
Matches are distributed among these distances:
747 30 0.01
748 42 0.02
749 64 0.03
750 8 0.00
759 1 0.00
770 1 0.00
772 1 0.00
776 44 0.02
777 2 0.00
778 52 0.02
779 7 0.00
780 32 0.01
781 8 0.00
782 3 0.00
786 491 0.23
787 4 0.00
789 30 0.01
790 66 0.03
791 67 0.03
792 2 0.00
793 1 0.00
794 3 0.00
795 8 0.00
796 57 0.03
797 192 0.09
798 5 0.00
799 1 0.00
800 2 0.00
801 2 0.00
802 1 0.00
803 193 0.09
804 13 0.01
805 3 0.00
806 23 0.01
807 216 0.10
809 3 0.00
810 1 0.00
811 6 0.00
812 3 0.00
813 1 0.00
814 4 0.00
815 374 0.17
816 17 0.01
817 83 0.04
ACGTcount: A:0.39, C:0.08, G:0.08, T:0.45
Consensus pattern (787 bp):
TATACCGGTTACATTGTAAATTTATCTATTACATTATAATTATCGGTTTCGATGTAACATATGTG
TCGATACTTTTAGAAAATGTATCGACACATATGTTTAATTATTCTCTCATTATAATATAATTAAT
GATATATTATTCTTATTATAATAAATAATAAATATAATTTATAATAATTTTATTTTAATAAAATA
TAATAATCATAATTTTTTATTTAAAAAATTATAGATATAATATTTTAATAATAATATTGACATAA
ATAATATTAAATAAATTATTCTAATATTTTAAAAATAATATTATTATTTTGTTAATAAATAATAT
TATTTTATTATATTTGATGTTTATAGTTATATTGTAATTATGATTATTTTTCATCACTTCATTAT
GATTATTTTTTAAAATTATATTATTATTTTATTATTTTTTTATTTTATTATTAGAAAGCTAATAT
CGAAATAGAAATACCATGTACTTTTTTTCATTAGTTATATTGTGGCAACTTACAAACTAAAAAAT
TAAAATTAATTTGTATAATTTGTGTTTACTAATTTTATCATTAAAAAATCTATTTTTACCGGTTT
TGTTATTGTTGGGCATAACAAAACCGATAAAAATTACCTAAAACATTATTATTTCTACCTAAAAC
ATCAATGTTTTTTAACATTTCCGGTAAAATACCCAACAATAACAAAACCGGTAAAAAAATAACAA
AACCGGTAGCGCTTTACCGGTTTTGTTAAAATAATGATGTTTTCGGTAATTTTTACCGGTTTGTT
ATTGTTG
Found at i:1575539 original size:30 final size:30
Alignment explanation
Indices: 1575454--1575539 Score: 81
Period size: 31 Copynumber: 2.8 Consensus size: 30
1575444 TTATAATAAA
*
1575454 TAAT-AAATATAATTTATAATATTTTTGTTT
1 TAATAAAATATAA-TAATAATATTTTTGTTT
*
1575484 TAATAAAATATAATAATCATAATTTTT-TATT
1 TAATAAAATATAATAATAAT-ATTTTTGT-TT
1575515 T-ATAAAATTATAGA-AATAATATTTT
1 TAATAAAA-TATA-ATAATAATATTTT
1575540 AATAATAATA
Statistics
Matches: 48, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
30 21 0.44
31 26 0.54
32 1 0.02
ACGTcount: A:0.47, C:0.01, G:0.02, T:0.50
Consensus pattern (30 bp):
TAATAAAATATAATAATAATATTTTTGTTT
Found at i:1575547 original size:28 final size:29
Alignment explanation
Indices: 1575502--1575566 Score: 69
Period size: 28 Copynumber: 2.3 Consensus size: 29
1575492 TATAATAATC
* * * *
1575502 ATAATTTTTTATTTATAAAATT-ATAGAA
1 ATAATATTTTAATAATAAAATTGACAGAA
* *
1575530 ATAATATTTTAATAATAATATTGACATAA
1 ATAATATTTTAATAATAAAATTGACAGAA
1575559 ATAATATT
1 ATAATATT
1575567 AAATAAATTA
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
28 18 0.60
29 12 0.40
ACGTcount: A:0.49, C:0.02, G:0.03, T:0.46
Consensus pattern (29 bp):
ATAATATTTTAATAATAAAATTGACAGAA
Found at i:1575572 original size:14 final size:14
Alignment explanation
Indices: 1575528--1575574 Score: 51
Period size: 14 Copynumber: 3.3 Consensus size: 14
1575518 AAAATTATAG
*
1575528 AAATAATATTTTAAT
1 AAATAATA-TTAAAT
*
1575543 -AATAATATTGACAT
1 AAATAATATT-AAAT
1575557 AAATAATATTAAAT
1 AAATAATATTAAAT
1575571 AAAT
1 AAAT
1575575 TATTCTAATA
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
13 2 0.07
14 16 0.59
15 9 0.33
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.38
Consensus pattern (14 bp):
AAATAATATTAAAT
Found at i:1576213 original size:31 final size:32
Alignment explanation
Indices: 1576154--1576217 Score: 96
Period size: 32 Copynumber: 2.0 Consensus size: 32
1576144 TTATGCACAA
1576154 CAATAACAAAACCAATACCGTCTTTTTTTAGC
1 CAATAACAAAACCAATACCGTCTTTTTTTAGC
*
1576186 CAATAACAAAATCAATA-C-TACTTTTTTTAGC
1 CAATAACAAAACCAATACCGT-CTTTTTTTAGC
1576217 C
1 C
1576218 GTATATTAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
30 1 0.03
31 13 0.43
32 16 0.53
ACGTcount: A:0.39, C:0.23, G:0.05, T:0.33
Consensus pattern (32 bp):
CAATAACAAAACCAATACCGTCTTTTTTTAGC
Found at i:1576538 original size:13 final size:13
Alignment explanation
Indices: 1576520--1576555 Score: 63
Period size: 13 Copynumber: 2.8 Consensus size: 13
1576510 CTCAGTAGAG
1576520 ATTTGAGACTCAA
1 ATTTGAGACTCAA
1576533 ATTTGAGACTCAA
1 ATTTGAGACTCAA
*
1576546 ATTCGAGACT
1 ATTTGAGACT
1576556 TTGCTTAAGT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.36, C:0.17, G:0.17, T:0.31
Consensus pattern (13 bp):
ATTTGAGACTCAA
Found at i:1583128 original size:21 final size:20
Alignment explanation
Indices: 1583080--1583132 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 20
1583070 CCCTTAAAGG
1583080 AGTATCGATACTCAGGGTCC
1 AGTATCGATACTCAGGGTCC
* *
1583100 AATATCGATACTCAGATGGT-T
1 AGTATCGATACTCAG--GGTCC
1583121 AGTATCGATACT
1 AGTATCGATACT
1583133 GAGGCATTTT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
20 14 0.50
21 11 0.39
22 3 0.11
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (20 bp):
AGTATCGATACTCAGGGTCC
Found at i:1589170 original size:2 final size:2
Alignment explanation
Indices: 1589163--1589188 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
1589153 ATTTGCATCA
1589163 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
1589189 TAATTTTCTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1592234 original size:16 final size:17
Alignment explanation
Indices: 1592213--1592250 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
1592203 CTTTTTAAAA
*
1592213 AAAAACAA-AAATATAT
1 AAAAACAATAAAAATAT
*
1592229 AAAAACAATAAAAATGT
1 AAAAACAATAAAAATAT
1592246 AAAAA
1 AAAAA
1592251 ATAAATGCTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
16 8 0.42
17 11 0.58
ACGTcount: A:0.76, C:0.05, G:0.03, T:0.16
Consensus pattern (17 bp):
AAAAACAATAAAAATAT
Found at i:1592251 original size:19 final size:18
Alignment explanation
Indices: 1592208--1592251 Score: 52
Period size: 19 Copynumber: 2.4 Consensus size: 18
1592198 GAACACTTTT
1592208 TAAAAAAAAACAAAAATA
1 TAAAAAAAAACAAAAATA
* * *
1592226 TATAAAAACAATAAAAATG
1 TA-AAAAAAAACAAAAATA
1592245 TAAAAAA
1 TAAAAAA
1592252 TAAATGCTAA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
18 7 0.32
19 15 0.68
ACGTcount: A:0.77, C:0.05, G:0.02, T:0.16
Consensus pattern (18 bp):
TAAAAAAAAACAAAAATA
Found at i:1594674 original size:15 final size:14
Alignment explanation
Indices: 1594650--1594679 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
1594640 ATAAATACAA
1594650 TTGGTGTAAGTGGT
1 TTGGTGTAAGTGGT
1594664 TTGGTTGTAAGTGGT
1 TTGG-TGTAAGTGGT
1594679 T
1 T
1594680 GTTCCGAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.27
15 11 0.73
ACGTcount: A:0.13, C:0.00, G:0.40, T:0.47
Consensus pattern (14 bp):
TTGGTGTAAGTGGT
Found at i:1602227 original size:31 final size:31
Alignment explanation
Indices: 1602192--1602269 Score: 156
Period size: 31 Copynumber: 2.5 Consensus size: 31
1602182 TATCGGTTTG
1602192 TAACAAAATGGTCACTAATATAATAGATTTC
1 TAACAAAATGGTCACTAATATAATAGATTTC
1602223 TAACAAAATGGTCACTAATATAATAGATTTC
1 TAACAAAATGGTCACTAATATAATAGATTTC
1602254 TAACAAAATGGTCACT
1 TAACAAAATGGTCACT
1602270 CCATCATTAT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 47 1.00
ACGTcount: A:0.45, C:0.14, G:0.10, T:0.31
Consensus pattern (31 bp):
TAACAAAATGGTCACTAATATAATAGATTTC
Found at i:1606652 original size:17 final size:17
Alignment explanation
Indices: 1606632--1606671 Score: 71
Period size: 17 Copynumber: 2.4 Consensus size: 17
1606622 TTTAAACATC
1606632 AAAGCTTTTGGCAGTTT
1 AAAGCTTTTGGCAGTTT
1606649 AAAGCTTTTGGCAGTTT
1 AAAGCTTTTGGCAGTTT
*
1606666 GAAGCT
1 AAAGCT
1606672 GGGAACTCTA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.25, C:0.12, G:0.25, T:0.38
Consensus pattern (17 bp):
AAAGCTTTTGGCAGTTT
Found at i:1607577 original size:24 final size:25
Alignment explanation
Indices: 1607550--1607596 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
1607540 CAAAATAAAT
1607550 ATTAAATAT-ATTTTTATTATTTTA
1 ATTAAATATAATTTTTATTATTTTA
* *
1607574 ATTAACTCTAATTTTTATTATTT
1 ATTAAATATAATTTTTATTATTT
1607597 AGAATACTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 7 0.35
25 13 0.65
ACGTcount: A:0.34, C:0.04, G:0.00, T:0.62
Consensus pattern (25 bp):
ATTAAATATAATTTTTATTATTTTA
Found at i:1616848 original size:6 final size:6
Alignment explanation
Indices: 1616839--1616940 Score: 186
Period size: 6 Copynumber: 17.0 Consensus size: 6
1616829 AATACTGCTG
* *
1616839 CCAGTG CCAGTG CCAGTA CCAGTA CCAGTA CCAGTA CCAGTA CCAGTA
1 CCAGTA CCAGTA CCAGTA CCAGTA CCAGTA CCAGTA CCAGTA CCAGTA
1616887 CCAGTA CCAGTA CCAGTA CCAGTA CCAGTA CCAGTA CCAGTA CCAGTA
1 CCAGTA CCAGTA CCAGTA CCAGTA CCAGTA CCAGTA CCAGTA CCAGTA
1616935 CCAGTA
1 CCAGTA
1616941 GTGTCTGAAT
Statistics
Matches: 95, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
6 95 1.00
ACGTcount: A:0.31, C:0.33, G:0.19, T:0.17
Consensus pattern (6 bp):
CCAGTA
Found at i:1619128 original size:16 final size:16
Alignment explanation
Indices: 1619109--1619153 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 16
1619099 ATCTGAAAGC
* *
1619109 AACCCAAACTGAACTT
1 AACCCAAACCGAAATT
*
1619125 AACCCGAACCGAAATT
1 AACCCAAACCGAAATT
*
1619141 AATCCAAACCGAA
1 AACCCAAACCGAA
1619154 TAATAAATTA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.47, C:0.31, G:0.09, T:0.13
Consensus pattern (16 bp):
AACCCAAACCGAAATT
Found at i:1619148 original size:32 final size:33
Alignment explanation
Indices: 1619071--1619154 Score: 80
Period size: 32 Copynumber: 2.6 Consensus size: 33
1619061 ACCATAACTT
* * * * *
1619071 AAAGAAATCCGAACTGAATTTTAACCCGATCTG
1 AAAGCAATCCAAACTGAATCTTAACCCGAACCG
*
1619104 AAAGCAACCCAAACTGAA-CTTAACCCGAACCG
1 AAAGCAATCCAAACTGAATCTTAACCCGAACCG
** *
1619136 AAATTAATCCAAACCGAAT
1 AAAGCAATCCAAACTGAAT
1619155 AATAAATTAA
Statistics
Matches: 40, Mismatches: 10, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
32 25 0.62
33 15 0.38
ACGTcount: A:0.44, C:0.26, G:0.12, T:0.18
Consensus pattern (33 bp):
AAAGCAATCCAAACTGAATCTTAACCCGAACCG
Found at i:1619220 original size:20 final size:20
Alignment explanation
Indices: 1619164--1619220 Score: 50
Period size: 18 Copynumber: 3.0 Consensus size: 20
1619154 TAATAAATTA
* *
1619164 ATTTA-AATAAAATTGATA-
1 ATTTATAATAAAAATAATAG
* *
1619182 ATTTAT--TAAAAGTATTAG
1 ATTTATAATAAAAATAATAG
1619200 ATTTATAATAAAAATAATAG
1 ATTTATAATAAAAATAATAG
1619220 A
1 A
1619221 AAGTTTGCTT
Statistics
Matches: 30, Mismatches: 5, Indels: 6
0.73 0.12 0.15
Matches are distributed among these distances:
17 8 0.27
18 11 0.37
20 11 0.37
ACGTcount: A:0.54, C:0.00, G:0.07, T:0.39
Consensus pattern (20 bp):
ATTTATAATAAAAATAATAG
Found at i:1620542 original size:21 final size:20
Alignment explanation
Indices: 1620495--1620544 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
1620485 TAATGTTATT
1620495 TAAT-TTATAAAATACAATA
1 TAATATTATAAAATACAATA
* * *
1620514 TAAAATTATAAAATATATTCA
1 TAATATTATAAAATACAAT-A
1620535 TAATATTATA
1 TAATATTATA
1620545 TTTCAAAGAA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
19 3 0.12
20 12 0.48
21 10 0.40
ACGTcount: A:0.56, C:0.04, G:0.00, T:0.40
Consensus pattern (20 bp):
TAATATTATAAAATACAATA
Found at i:1620715 original size:21 final size:21
Alignment explanation
Indices: 1620652--1620716 Score: 121
Period size: 21 Copynumber: 3.1 Consensus size: 21
1620642 AGACCAAATT
1620652 GAGTAAAATGCAAAGTTAAGG
1 GAGTAAAATGCAAAGTTAAGG
*
1620673 AAGTAAAATGCAAAGTTAAGG
1 GAGTAAAATGCAAAGTTAAGG
1620694 GAGTAAAATGCAAAGTTAAGG
1 GAGTAAAATGCAAAGTTAAGG
1620715 GA
1 GA
1620717 CTAATAAAAG
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 42 1.00
ACGTcount: A:0.49, C:0.05, G:0.28, T:0.18
Consensus pattern (21 bp):
GAGTAAAATGCAAAGTTAAGG
Found at i:1621721 original size:43 final size:42
Alignment explanation
Indices: 1621655--1621999 Score: 338
Period size: 43 Copynumber: 8.1 Consensus size: 42
1621645 TCGAGACATA
* * *
1621655 TAGCGGCGTTTGTCTTTACAAACGTCGCTATTGACTGTGTATT
1 TAGCCGCGTTTGACTTTA-AAACGCCGCTATTGACTGTGTATT
*
1621698 TAGCCGCGTTTGACTTTGAAAACGCTGCTATTGACTGTGTATT
1 TAGCCGCGTTTGACTTT-AAAACGCCGCTATTGACTGTGTATT
*
1621741 TAGCCGCGTTTAACTTTGAAAACGCCGCTATTGACTGTGTATT
1 TAGCCGCGTTTGACTTT-AAAACGCCGCTATTGACTGTGTATT
* * *
1621784 TAG-CGACATTTTACTTTATAAACGCCGCTATTAACTGTGTATT
1 TAGCCG-CGTTTGACTTTA-AAACGCCGCTATTGACTGTGTATT
* * *
1621827 TAGCGGCGTTTGTCTTTGAAAATGCCGCTATTGACTGTGTATT
1 TAGCCGCGTTTGACTTT-AAAACGCCGCTATTGACTGTGTATT
* * ** *
1621870 TAGCGGCGTTTGTA-TTTATAACGTTGCTATTGATTGTGTATT
1 TAGCCGCGTTTG-ACTTTAAAACGCCGCTATTGACTGTGTATT
* * * * *
1621912 TAGCGGCGTTTGTCTTTGAAAATGCCGTTATTTGATTGT-TATT
1 TAGCCGCGTTTGACTTT-AAAACGCCGCTA-TTGACTGTGTATT
** * * *
1621955 TAG-CTTGTTTGTCTTTATAAATGCCGCTATTAACTGTGTATT
1 TAGCCGCGTTTGACTTTA-AAACGCCGCTATTGACTGTGTATT
1621997 TAG
1 TAG
1622000 TGCATTTGTA
Statistics
Matches: 258, Mismatches: 33, Indels: 23
0.82 0.11 0.07
Matches are distributed among these distances:
41 7 0.03
42 65 0.25
43 175 0.68
44 11 0.04
ACGTcount: A:0.21, C:0.16, G:0.21, T:0.41
Consensus pattern (42 bp):
TAGCCGCGTTTGACTTTAAAACGCCGCTATTGACTGTGTATT
Found at i:1621770 original size:86 final size:85
Alignment explanation
Indices: 1621655--1621999 Score: 412
Period size: 86 Copynumber: 4.0 Consensus size: 85
1621645 TCGAGACATA
*
1621655 TAGCGGCGTTTGTCTTT-ACAAACGTCGCTATTGACTGTGTATTTAGCCGCGTTTGACTTTGA-A
1 TAGCGGCGTTTGTCTTTGA-AAACGCCGCTATTGACTGTGTATTTAG-CGCGTTTGACTTT-ATA
* *
1621718 AACGCTGCTATTGACTGTGTATT
63 AACGCCGCTATTAACTGTGTATT
* ** * *
1621741 TAGCCGCGTTTAACTTTGAAAACGCCGCTATTGACTGTGTATTTAGCGACATTTTACTTTATAAA
1 TAGCGGCGTTTGTCTTTGAAAACGCCGCTATTGACTGTGTATTTAGCG-CGTTTGACTTTATAAA
1621806 CGCCGCTATTAACTGTGTATT
65 CGCCGCTATTAACTGTGTATT
*
1621827 TAGCGGCGTTTGTCTTTGAAAATGCCGCTATTGACTGTGTATTTAGCGGCGTTTGTA-TTTAT-A
1 TAGCGGCGTTTGTCTTTGAAAACGCCGCTATTGACTGTGTATTTAGC-GCGTTTG-ACTTTATAA
** * *
1621890 ACGTTGCTATTGATTGTGTATT
64 ACGCCGCTATTAACTGTGTATT
* * * ** *
1621912 TAGCGGCGTTTGTCTTTGAAAATGCCGTTATTTGATTGT-TATTTAGCTTGTTTGTCTTTATAAA
1 TAGCGGCGTTTGTCTTTGAAAACGCCGCTA-TTGACTGTGTATTTAGCGCGTTTGACTTTATAAA
*
1621976 TGCCGCTATTAACTGTGTATT
65 CGCCGCTATTAACTGTGTATT
1621997 TAG
1 TAG
1622000 TGCATTTGTA
Statistics
Matches: 223, Mismatches: 28, Indels: 17
0.83 0.10 0.06
Matches are distributed among these distances:
84 10 0.04
85 80 0.36
86 130 0.58
87 3 0.01
ACGTcount: A:0.21, C:0.16, G:0.21, T:0.41
Consensus pattern (85 bp):
TAGCGGCGTTTGTCTTTGAAAACGCCGCTATTGACTGTGTATTTAGCGCGTTTGACTTTATAAAC
GCCGCTATTAACTGTGTATT
Found at i:1624983 original size:19 final size:20
Alignment explanation
Indices: 1624959--1625010 Score: 70
Period size: 20 Copynumber: 2.6 Consensus size: 20
1624949 CCATTATAGT
1624959 AAGAGTG-AAAAAATGATAA
1 AAGAGTGCAAAAAATGATAA
* *
1624978 AAGAGTGCCAAAAGTGATAA
1 AAGAGTGCAAAAAATGATAA
1624998 AAGAGTGCCAAAA
1 AAGAGTG-CAAAA
1625011 GTGTGAGCTA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
19 7 0.25
20 17 0.61
21 4 0.14
ACGTcount: A:0.56, C:0.08, G:0.23, T:0.13
Consensus pattern (20 bp):
AAGAGTGCAAAAAATGATAA
Found at i:1624995 original size:20 final size:20
Alignment explanation
Indices: 1624967--1625013 Score: 85
Period size: 20 Copynumber: 2.4 Consensus size: 20
1624957 GTAAGAGTGA
*
1624967 AAAAATGATAAAAGAGTGCC
1 AAAAGTGATAAAAGAGTGCC
1624987 AAAAGTGATAAAAGAGTGCC
1 AAAAGTGATAAAAGAGTGCC
1625007 AAAAGTG
1 AAAAGTG
1625014 TGAGCTAGAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.53, C:0.09, G:0.23, T:0.15
Consensus pattern (20 bp):
AAAAGTGATAAAAGAGTGCC
Found at i:1625203 original size:28 final size:29
Alignment explanation
Indices: 1625172--1625237 Score: 91
Period size: 28 Copynumber: 2.3 Consensus size: 29
1625162 TTAGTTATAT
* *
1625172 TATATGGTCGACTT-TGTCGCCTGATTGA
1 TATATGGTCGACTTATATCGCCTGAATGA
*
1625200 TATATGGTC-AGTTATATCGCCTGAATGA
1 TATATGGTCGACTTATATCGCCTGAATGA
1625228 TATATGGTCG
1 TATATGGTCG
1625238 GCCTTGCCAC
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
27 3 0.09
28 30 0.91
ACGTcount: A:0.23, C:0.15, G:0.24, T:0.38
Consensus pattern (29 bp):
TATATGGTCGACTTATATCGCCTGAATGA
Found at i:1627057 original size:18 final size:17
Alignment explanation
Indices: 1627003--1627051 Score: 53
Period size: 19 Copynumber: 2.7 Consensus size: 17
1626993 TTGGACCCTT
* *
1627003 AGTGCATCGGTGCACTAA
1 AGTGCATCGATGCA-TCA
1627021 GAGTGCATCGATGCATCA
1 -AGTGCATCGATGCATCA
1627039 AGTGCATTCGATG
1 AGTGCA-TCGATG
1627052 TTTCAAAATA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
17 6 0.22
18 8 0.30
19 13 0.48
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (17 bp):
AGTGCATCGATGCATCA
Found at i:1632209 original size:21 final size:21
Alignment explanation
Indices: 1632183--1632227 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
1632173 GATTTCTGGG
* *
1632183 CAAGGGGAATCGGTACCCATT
1 CAAGGGGAACCGATACCCATT
*
1632204 CAAGGGGAACCGATACCCCTT
1 CAAGGGGAACCGATACCCATT
1632225 CAA
1 CAA
1632228 ACGAACAAGA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.31, C:0.29, G:0.24, T:0.16
Consensus pattern (21 bp):
CAAGGGGAACCGATACCCATT
Found at i:1633084 original size:2 final size:2
Alignment explanation
Indices: 1633077--1633117 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
1633067 AATCTTGAGG
1633077 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1633118 GATAGATGAA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:1633923 original size:22 final size:22
Alignment explanation
Indices: 1633891--1633993 Score: 179
Period size: 22 Copynumber: 4.6 Consensus size: 22
1633881 ATCATTATAT
* *
1633891 GGCACTACGGTGTAATTCTACG
1 GGCACTTCGGTGCAATTCTACG
1633913 GGCACTTCGGTGCAATTCTACG
1 GGCACTTCGGTGCAATTCTACG
1633935 GGCACTTCGGTGCAATTCTACG
1 GGCACTTCGGTGCAATTCTACG
1633957 GGCACTTCGGTGCAATTCTACGG
1 GGCACTTCGGTGCAATTCTAC-G
1633980 GGCACTTCGGTGCA
1 GGCACTTCGGTGCA
1633994 TTTATACGAG
Statistics
Matches: 78, Mismatches: 2, Indels: 1
0.96 0.02 0.01
Matches are distributed among these distances:
22 63 0.81
23 15 0.19
ACGTcount: A:0.18, C:0.26, G:0.29, T:0.26
Consensus pattern (22 bp):
GGCACTTCGGTGCAATTCTACG
Found at i:1637140 original size:21 final size:21
Alignment explanation
Indices: 1637114--1637158 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
1637104 GATTTCTGGG
* *
1637114 CAAGGGGAATCGGTACCCATT
1 CAAGGGGAACCGATACCCATT
*
1637135 CAAGGGGAACCGATACCCCTT
1 CAAGGGGAACCGATACCCATT
1637156 CAA
1 CAA
1637159 ACGAACAAGA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.31, C:0.29, G:0.24, T:0.16
Consensus pattern (21 bp):
CAAGGGGAACCGATACCCATT
Found at i:1638010 original size:2 final size:2
Alignment explanation
Indices: 1638003--1638060 Score: 107
Period size: 2 Copynumber: 29.0 Consensus size: 2
1637993 AAATCTGAGG
1638003 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
1638045 AT AT AT AT AT AG AT AT
1 AT AT AT AT AT AT AT AT
1638061 GAAATGAAAT
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 54 1.00
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (2 bp):
AT
Found at i:1638852 original size:22 final size:22
Alignment explanation
Indices: 1638820--1638922 Score: 188
Period size: 22 Copynumber: 4.6 Consensus size: 22
1638810 ATCATTATAT
*
1638820 GGCACTACGGTGCAATTCTACG
1 GGCACTTCGGTGCAATTCTACG
1638842 GGCACTTCGGTGCAATTCTACG
1 GGCACTTCGGTGCAATTCTACG
1638864 GGCACTTCGGTGCAATTCTACG
1 GGCACTTCGGTGCAATTCTACG
1638886 GGCACTTCGGTGCAATTCTACGG
1 GGCACTTCGGTGCAATTCTAC-G
1638909 GGCACTTCGGTGCA
1 GGCACTTCGGTGCA
1638923 TTTATACGAG
Statistics
Matches: 79, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
22 64 0.81
23 15 0.19
ACGTcount: A:0.18, C:0.27, G:0.29, T:0.25
Consensus pattern (22 bp):
GGCACTTCGGTGCAATTCTACG
Found at i:1645012 original size:41 final size:42
Alignment explanation
Indices: 1644863--1645023 Score: 118
Period size: 41 Copynumber: 3.9 Consensus size: 42
1644853 TAAATTTTGC
* * **
1644863 CTGTTGCGGCGTTTGTCTTTGAAAACGCCGCTAAACTACTACT
1 CTGTTGCGGCGTTTGTCTTT-AAAAAGCCGCTAAAGTAAAACT
* * * **
1644906 CTGTTGCGGTG-TT-T-ATTAAAAATGCCACTAAAGATGGAA-T
1 CTGTTGCGGCGTTTGTCTTTAAAAA-GCCGCTAAAG-TAAAACT
* * *
1644946 CTATTGCGGCGTTT-T-TATAAAAAAACCGCTAAAGTAAAACT
1 CTGTTGCGGCGTTTGTCT-TTAAAAAGCCGCTAAAGTAAAACT
*
1644987 CTGTTGCGGCGTTTGTCTTTGAAAACGCCGCTAAAGT
1 CTGTTGCGGCGTTTGTCTTT-AAAAAGCCGCTAAAGT
1645024 TACCATTTTG
Statistics
Matches: 90, Mismatches: 20, Indels: 16
0.71 0.16 0.13
Matches are distributed among these distances:
39 4 0.04
40 23 0.26
41 28 0.31
42 10 0.11
43 25 0.28
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.32
Consensus pattern (42 bp):
CTGTTGCGGCGTTTGTCTTTAAAAAGCCGCTAAAGTAAAACT
Found at i:1646938 original size:26 final size:27
Alignment explanation
Indices: 1646909--1646971 Score: 67
Period size: 28 Copynumber: 2.3 Consensus size: 27
1646899 TAGTTATATT
* *
1646909 ATATGGTCGACTT-TGTCGCCTGATTGA
1 ATATGGTCG-CTTATATCGCCTGAATGA
*
1646936 TATATGGTCGGTTATATCGCCTGAATG-
1 -ATATGGTCGCTTATATCGCCTGAATGA
1646963 ATATGGTCG
1 ATATGGTCG
1646972 GCCTTGCCAC
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
26 9 0.29
27 2 0.06
28 20 0.65
ACGTcount: A:0.21, C:0.16, G:0.27, T:0.37
Consensus pattern (27 bp):
ATATGGTCGCTTATATCGCCTGAATGA
Found at i:1649134 original size:22 final size:23
Alignment explanation
Indices: 1649104--1649163 Score: 68
Period size: 25 Copynumber: 2.5 Consensus size: 23
1649094 AAACGTGTCA
1649104 AAAGACAGAGAAAAA-GTGATATG
1 AAAG-CAGAGAAAAACGTGATATG
*
1649127 AAAGCAGAGAAAAAAACGTGCTATG
1 AAAGCAGAG--AAAAACGTGATATG
*
1649152 AAAACAGAGAAA
1 AAAGCAGAGAAA
1649164 TTCGTGTCTT
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
22 5 0.16
23 7 0.22
24 5 0.16
25 15 0.47
ACGTcount: A:0.58, C:0.08, G:0.23, T:0.10
Consensus pattern (23 bp):
AAAGCAGAGAAAAACGTGATATG
Found at i:1649151 original size:25 final size:24
Alignment explanation
Indices: 1649114--1649163 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 24
1649104 AAAGACAGAG
*
1649114 AAAAAGTGATATGAAAGCAGAGAA
1 AAAAAGTGATATGAAAACAGAGAA
*
1649138 AAAAACGTGCTATGAAAACAGAGAA
1 AAAAA-GTGATATGAAAACAGAGAA
1649163 A
1 A
1649164 TTCGTGTCTT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 5 0.22
25 18 0.78
ACGTcount: A:0.58, C:0.08, G:0.22, T:0.12
Consensus pattern (24 bp):
AAAAAGTGATATGAAAACAGAGAA
Found at i:1656598 original size:13 final size:13
Alignment explanation
Indices: 1656580--1656604 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1656570 CCCTAGAAAA
1656580 AAAACCTTAAACT
1 AAAACCTTAAACT
1656593 AAAACCTTAAAC
1 AAAACCTTAAAC
1656605 CCGTTACCAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.24, G:0.00, T:0.20
Consensus pattern (13 bp):
AAAACCTTAAACT
Found at i:1660043 original size:26 final size:26
Alignment explanation
Indices: 1660007--1660059 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
1659997 AACCTCAATC
1660007 CTGCAGCTGGACAGCGTTCGAAAAGT
1 CTGCAGCTGGACAGCGTTCGAAAAGT
1660033 CTGCAGCTGGACAGCGTTCGAAAAGT
1 CTGCAGCTGGACAGCGTTCGAAAAGT
1660059 C
1 C
1660060 GCCGGTGATC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.25, G:0.30, T:0.19
Consensus pattern (26 bp):
CTGCAGCTGGACAGCGTTCGAAAAGT
Found at i:1666582 original size:9 final size:9
Alignment explanation
Indices: 1666564--1666634 Score: 53
Period size: 9 Copynumber: 8.3 Consensus size: 9
1666554 TTGTAATTTT
1666564 TATTAATAA
1 TATTAATAA
*
1666573 TATTAGTAA
1 TATTAATAA
*
1666582 TAATAATAA
1 TATTAATAA
*
1666591 TATTAGTAA
1 TATTAATAA
1666600 TTATT-ATAA
1 -TATTAATAA
*
1666609 GA-TAAT-A
1 TATTAATAA
1666616 T-TTAATAA
1 TATTAATAA
*
1666624 -AATAATAA
1 TATTAATAA
1666632 TAT
1 TAT
1666635 ATTTATAAAT
Statistics
Matches: 46, Mismatches: 10, Indels: 12
0.68 0.15 0.18
Matches are distributed among these distances:
7 6 0.13
8 10 0.22
9 26 0.57
10 4 0.09
ACGTcount: A:0.54, C:0.00, G:0.04, T:0.42
Consensus pattern (9 bp):
TATTAATAA
Found at i:1666608 original size:18 final size:18
Alignment explanation
Indices: 1666563--1666608 Score: 65
Period size: 18 Copynumber: 2.5 Consensus size: 18
1666553 CTTGTAATTT
1666563 TTATTAATAATATTAGTAA
1 TTATT-ATAATATTAGTAA
* *
1666582 TAATAATAATATTAGTAA
1 TTATTATAATATTAGTAA
1666600 TTATTATAA
1 TTATTATAA
1666609 GATAATATTT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
18 20 0.87
19 3 0.13
ACGTcount: A:0.50, C:0.00, G:0.04, T:0.46
Consensus pattern (18 bp):
TTATTATAATATTAGTAA
Found at i:1666650 original size:20 final size:19
Alignment explanation
Indices: 1666605--1666651 Score: 53
Period size: 20 Copynumber: 2.5 Consensus size: 19
1666595 AGTAATTATT
*
1666605 ATAAGATAATATTTAATAAA
1 ATAAAATAATATTTAAT-AA
1666625 ATAATAAT-ATATTT-ATAA
1 ATAA-AATAATATTTAATAA
1666643 ATAAAATAA
1 ATAAAATAA
1666652 ATTAATATGG
Statistics
Matches: 24, Mismatches: 1, Indels: 6
0.77 0.03 0.19
Matches are distributed among these distances:
17 3 0.12
18 7 0.29
19 2 0.08
20 10 0.42
21 2 0.08
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (19 bp):
ATAAAATAATATTTAATAA
Found at i:1667041 original size:113 final size:113
Alignment explanation
Indices: 1666916--1667799 Score: 1379
Period size: 113 Copynumber: 7.8 Consensus size: 113
1666906 CTTGATGAGT
*
1666916 TCTTCTCATTATGAACTTCTTCATCCTTCTTTC-GATGAGTTCTTCTCATTATGAACTCTT-TCT
1 TCTTCTCATTATGAACTTCTTCTTCCTTC-TTCAGATGAGTTCTTCTCATTATGAACT-TTCTCT
* * * * * * *
1666979 GGCAAGGCTGATCCATCAATTGAT-GAATTCATGTAAAAGGTTGAACAAGT
64 GGAAAAGCTGATCCATCAAGTGATGGATTTGA-GCAAAAGGTTGAACAAGC
1667029 TCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGG
1 TCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGG
* * **
1667094 AAAAGCTGATCCATCAAGTGAT-GAATTCATGCAAAAGGTTGAACAAAT
66 AAAAGCTGATCCATCAAGTGATGGATTTGA-GCAAAAGGTTGAACAAGC
*
1667142 TCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCTTTATGAACTTTCTCTGG
1 TCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGG
1667207 AAAAGCTGATCCATCAAGTGATGGATTTGAGCAAAAGGTTGAACAAGC
66 AAAAGCTGATCCATCAAGTGATGGATTTGAGCAAAAGGTTGAACAAGC
* *
1667255 TCTTCTCATTATG-ACTT-TTCTTCCTTCTTCAGATGAGTTCTTCTCTTTATGAACTTTCTCTAG
1 TCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGG
1667318 AAAAGCTGATCCATCAAGTGATGGATTTGAGCAAAAGGTTGAACAAGC
66 AAAAGCTGATCCATCAAGTGATGGATTTGAGCAAAAGGTTGAACAAGC
* *
1667366 TCTTCTCATTATGAACTTTTTCTTCCTTCTTCAGATGAGTTCTTCTCTTTATGAACTTTCTCTGG
1 TCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGG
1667431 AAAAGCTGATCCATCAAGTGATGGATTTGAGCAAAAGGTTGAACAAGC
66 AAAAGCTGATCCATCAAGTGATGGATTTGAGCAAAAGGTTGAACAAGC
* *
1667479 TCTTCTCATTATGAACTTTTTCTTCCTTCTTCAGATGAGTTCTTCTCTTTATGAACTTTCTCTGG
1 TCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGG
1667544 AAAAGCTGATCCATCAAGTGATGGATTTGAGCAAAAGGTTGAACAAGC
66 AAAAGCTGATCCATCAAGTGATGGATTTGAGCAAAAGGTTGAACAAGC
* *
1667592 TCTTCTCATTATGAACTTTTTCTTCCTTCTTCCGATGAGTTCTTCTCATTATGAACTTTCTCTGG
1 TCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGG
* * * * * * *
1667657 AAATG-TCAATCCATCAATTGATGAATTT-AGGTAACAGGTTGAACAAGT
66 AAAAGCT-GATCCATCAAGTGATGGATTTGA-GCAAAAGGTTGAACAAGC
*
1667705 TCTTCTCATTATGAACTTCTTATTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGG
1 TCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGG
* *
1667770 AAAAGCTGATCCATCAAATGATAGATTTGA
66 AAAAGCTGATCCATCAAGTGATGGATTTGA
1667800 ATGTTTGCTA
Statistics
Matches: 732, Mismatches: 30, Indels: 17
0.94 0.04 0.02
Matches are distributed among these distances:
111 106 0.14
112 15 0.02
113 604 0.83
114 7 0.01
ACGTcount: A:0.26, C:0.20, G:0.15, T:0.39
Consensus pattern (113 bp):
TCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGG
AAAAGCTGATCCATCAAGTGATGGATTTGAGCAAAAGGTTGAACAAGC
Found at i:1667554 original size:337 final size:337
Alignment explanation
Indices: 1666916--1667799 Score: 1427
Period size: 337 Copynumber: 2.6 Consensus size: 337
1666906 CTTGATGAGT
*
1666916 TCTTCTCATTATGAACTTCTTCATCCTTCTTTCGATGAGTTCTTCTCATTATGAACTCTT-TCTG
1 TCTTCTCATTATGAACTT-TTCTTCCTTC-TTCGATGAGTTCTTCTCATTATGAACT-TTCTCTG
* * * * *
1666980 GCAAGGCTGATCCATCAATTGATGAATTCATGTAAAAGGTTGAACAAGTTCTTCTCATTATGAAC
63 GAAAAGCTGATCCATCAATTGATGGATTTAGGTAAAAGGTTGAACAAGTTCTTCTCATTATGAAC
1667045 TTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAAAGCTGATCCATCA
128 TTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAAAGCTGATCCATCA
* * *
1667110 AGTGATGAATTCATGCAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCA
193 AGTGATGATTTGATGCAAAAGGTTGAACAAACTCTTCTCATTATGAACTTCTTCTTCCTTCTTCA
1667175 GATGAGTTCTTCTCTTTATGAACTTTCTCTGGAAAAGCTGATCCATCAAGTGATGGATTTGAGCA
258 GATGAGTTCTTCTCTTTATGAACTTTCTCTGGAAAAGCTGATCCATCAAGTGATGGATTTGAGCA
1667240 AAAGGTTGAACAAGC
323 AAAGGTTGAACAAGC
* *
1667255 TCTTCTCATTATG-ACTTTTCTTCCTTCTTCAGATGAGTTCTTCTCTTTATGAACTTTCTCTAGA
1 TCTTCTCATTATGAACTTTTCTTCCTTCTTC-GATGAGTTCTTCTCATTATGAACTTTCTCTGGA
* * *
1667319 AAAGCTGATCCATCAAGTGATGGATTT-GAGCAAAAGGTTGAACAAGCTCTTCTCATTATGAACT
65 AAAGCTGATCCATCAATTGATGGATTTAG-GTAAAAGGTTGAACAAGTTCTTCTCATTATGAACT
* *
1667383 TTTTCTTCCTTCTTCAGATGAGTTCTTCTCTTTATGAACTTTCTCTGGAAAAGCTGATCCATCAA
129 TCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAAAGCTGATCCATCAA
* *
1667448 GTGATGGATTTGA-GCAAAAGGTTGAACAAGCTCTTCTCATTATGAACTTTTTCTTCCTTCTTCA
194 GTGAT-GATTTGATGCAAAAGGTTGAACAAACTCTTCTCATTATGAACTTCTTCTTCCTTCTTCA
1667512 GATGAGTTCTTCTCTTTATGAACTTTCTCTGGAAAAGCTGATCCATCAAGTGATGGATTTGAGCA
258 GATGAGTTCTTCTCTTTATGAACTTTCTCTGGAAAAGCTGATCCATCAAGTGATGGATTTGAGCA
1667577 AAAGGTTGAACAAGC
323 AAAGGTTGAACAAGC
1667592 TCTTCTCATTATGAACTTTTTCTTCCTTCTTCCGATGAGTTCTTCTCATTATGAACTTTCTCTGG
1 TCTTCTCATTATGAAC-TTTTCTTCCTTCTT-CGATGAGTTCTTCTCATTATGAACTTTCTCTGG
* * * *
1667657 AAATG-TCAATCCATCAATTGATGAATTTAGGTAACAGGTTGAACAAGTTCTTCTCATTATGAAC
64 AAAAGCT-GATCCATCAATTGATGGATTTAGGTAAAAGGTTGAACAAGTTCTTCTCATTATGAAC
*
1667721 TTCTTATTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAAAGCTGATCCATCA
128 TTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAAAGCTGATCCATCA
*
1667786 AATGATAGATTTGA
193 AGTGAT-GATTTGA
1667800 ATGTTTGCTA
Statistics
Matches: 504, Mismatches: 32, Indels: 18
0.91 0.06 0.03
Matches are distributed among these distances:
336 5 0.01
337 301 0.60
338 12 0.02
339 184 0.37
340 2 0.00
ACGTcount: A:0.26, C:0.20, G:0.15, T:0.39
Consensus pattern (337 bp):
TCTTCTCATTATGAACTTTTCTTCCTTCTTCGATGAGTTCTTCTCATTATGAACTTTCTCTGGAA
AAGCTGATCCATCAATTGATGGATTTAGGTAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTC
TTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAAAGCTGATCCATCAAGT
GATGATTTGATGCAAAAGGTTGAACAAACTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGAT
GAGTTCTTCTCTTTATGAACTTTCTCTGGAAAAGCTGATCCATCAAGTGATGGATTTGAGCAAAA
GGTTGAACAAGC
Found at i:1668731 original size:83 final size:83
Alignment explanation
Indices: 1668587--1669017 Score: 722
Period size: 83 Copynumber: 5.2 Consensus size: 83
1668577 CTTATTTCTA
1668587 CTATGAGCAAATTCATCTTCCAAATTCAATGATTGGTTCTGCCAAACCAGATCAGATAACTCAAA
1 CTATGAGCAAATTCATCTTCCAAATTCAATGATTGGTTCTGCCAAACCAGATCAGATAACTCAAA
1668652 GAACACTTCCAGAAGATG
66 GAACACTTCCAGAAGATG
* *
1668670 CTATTAGCAAATTCATCTTCCAAATTCCATGATTGGTTCTGCCAAACCAGATCAGATAACTCAAA
1 CTATGAGCAAATTCATCTTCCAAATTCAATGATTGGTTCTGCCAAACCAGATCAGATAACTCAAA
1668735 GAACACTTCCAGAAGATG
66 GAACACTTCCAGAAGATG
*
1668753 CTATGAGCACATTGC-TCTTCCAAATTCAATGATTGGTTCTGCCAAACCAGATCAGATAACTCAA
1 CTATGAGCAAATT-CATCTTCCAAATTCAATGATTGGTTCTGCCAAACCAGATCAGATAACTCAA
*
1668817 AGAACACTTCCAAAAGATG
65 AGAACACTTCCAGAAGATG
* * *
1668836 TTATTAGCAAATTCATCTTCCAAATTCAATGATTGGTTCTACCAAACCAGATCAGATAACTCAAA
1 CTATGAGCAAATTCATCTTCCAAATTCAATGATTGGTTCTGCCAAACCAGATCAGATAACTCAAA
1668901 GAACACTTCCAGAAGATG
66 GAACACTTCCAGAAGATG
* * *
1668919 CTATGAGCACATTGC-TCTTACAAATTCAATGATTGGTTTTGCCAAACCAGATCAGATAACTCAA
1 CTATGAGCAAATT-CATCTTCCAAATTCAATGATTGGTTCTGCCAAACCAGATCAGATAACTCAA
*
1668983 AGAACACTTCCAAAAGATG
65 AGAACACTTCCAGAAGATG
*
1669002 CTATGAGCACATTCAT
1 CTATGAGCAAATTCAT
1669018 TTGTTCCATT
Statistics
Matches: 326, Mismatches: 18, Indels: 8
0.93 0.05 0.02
Matches are distributed among these distances:
82 2 0.01
83 322 0.99
84 2 0.01
ACGTcount: A:0.37, C:0.23, G:0.14, T:0.26
Consensus pattern (83 bp):
CTATGAGCAAATTCATCTTCCAAATTCAATGATTGGTTCTGCCAAACCAGATCAGATAACTCAAA
GAACACTTCCAGAAGATG
Found at i:1670175 original size:10 final size:10
Alignment explanation
Indices: 1670162--1670232 Score: 69
Period size: 9 Copynumber: 7.2 Consensus size: 10
1670152 TGACCCCCCT
1670162 TTTTTTTCTC
1 TTTTTTTCTC
1670172 TTTTTTTTTCTTC
1 --TTTTTTTC-TC
*
1670185 TTTTTTTTTC
1 TTTTTTTCTC
1670195 -TTTTTT-TC
1 TTTTTTTCTC
1670203 TTTTTTTCT-
1 TTTTTTTCTC
*
1670212 TTTTTTTCAC
1 TTTTTTTCTC
1670222 -TTTTTTCTC
1 TTTTTTTCTC
1670231 TT
1 TT
1670233 CAAGCATAAT
Statistics
Matches: 51, Mismatches: 3, Indels: 12
0.77 0.05 0.18
Matches are distributed among these distances:
8 2 0.04
9 28 0.55
10 4 0.08
11 7 0.14
12 8 0.16
13 2 0.04
ACGTcount: A:0.01, C:0.15, G:0.00, T:0.83
Consensus pattern (10 bp):
TTTTTTTCTC
Found at i:1670179 original size:13 final size:13
Alignment explanation
Indices: 1670161--1670218 Score: 66
Period size: 13 Copynumber: 4.5 Consensus size: 13
1670151 TTGACCCCCC
1670161 TTTTTTTTCTC-T
1 TTTTTTTTCTCTT
1670173 TTTTTTTTCT-TCT
1 TTTTTTTTCTCT-T
*
1670186 TTTTTTTTCTTTT
1 TTTTTTTTCTCTT
*
1670199 TTTCTTTTTTTCTT
1 TTT-TTTTTCTCTT
1670213 TTTTTT
1 TTTTTT
1670219 CACTTTTTTC
Statistics
Matches: 40, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
12 10 0.25
13 18 0.45
14 12 0.30
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (13 bp):
TTTTTTTTCTCTT
Found at i:1670194 original size:25 final size:24
Alignment explanation
Indices: 1670160--1670227 Score: 91
Period size: 25 Copynumber: 2.8 Consensus size: 24
1670150 CTTGACCCCC
1670160 CTTTTTTTTCTCTTTTTTTTTCTT
1 CTTTTTTTTCTCTTTTTTTTTCTT
* *
1670184 CTTTTTTTTTCTTTTTTTCTTTTTTT
1 C-TTTTTTTTCTCTTTTT-TTTTCTT
*
1670210 CTTTTTTTTCACTTTTTT
1 CTTTTTTTTCTCTTTTTT
1670228 CTCTTCAAGC
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
24 2 0.05
25 29 0.76
26 7 0.18
ACGTcount: A:0.01, C:0.15, G:0.00, T:0.84
Consensus pattern (24 bp):
CTTTTTTTTCTCTTTTTTTTTCTT
Found at i:1670217 original size:8 final size:8
Alignment explanation
Indices: 1670162--1670217 Score: 71
Period size: 8 Copynumber: 6.9 Consensus size: 8
1670152 TGACCCCCCT
1670162 TTTTTTTC
1 TTTTTTTC
1670170 TCTTTTTT-
1 T-TTTTTTC
1670178 TTTCTTCTT-
1 TTT-TT-TTC
1670187 TTTTTTTC
1 TTTTTTTC
1670195 TTTTTTTC
1 TTTTTTTC
1670203 TTTTTTTC
1 TTTTTTTC
1670211 TTTTTTT
1 TTTTTTT
1670218 TCACTTTTTT
Statistics
Matches: 44, Mismatches: 0, Indels: 8
0.85 0.00 0.15
Matches are distributed among these distances:
7 4 0.09
8 29 0.66
9 11 0.25
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (8 bp):
TTTTTTTC
Found at i:1670227 original size:1 final size:1
Alignment explanation
Indices: 1670161--1670218 Score: 53
Period size: 1 Copynumber: 58.0 Consensus size: 1
1670151 TTGACCCCCC
* * * * * * *
1670161 TTTTTTTTCTCTTTTTTTTTCTTCTTTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1670219 CACTTTTTTC
Statistics
Matches: 43, Mismatches: 14, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
1 43 1.00
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (1 bp):
T
Found at i:1670227 original size:13 final size:12
Alignment explanation
Indices: 1670161--1670219 Score: 75
Period size: 12 Copynumber: 4.8 Consensus size: 12
1670151 TTGACCCCCC
*
1670161 TTTTTTTTCTCT
1 TTTTTTTTCTTT
1670173 TTTTTTTTCTTCT
1 TTTTTTTTCTT-T
1670186 TTTTTTTTCTTT
1 TTTTTTTTCTTT
1670198 TTTTCTTTT-TTT
1 TTTT-TTTTCTTT
1670210 CTTTTTTTTC
1 -TTTTTTTTC
1670220 ACTTTTTTCT
Statistics
Matches: 42, Mismatches: 1, Indels: 7
0.84 0.02 0.14
Matches are distributed among these distances:
12 22 0.52
13 20 0.48
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (12 bp):
TTTTTTTTCTTT
Found at i:1682531 original size:3 final size:3
Alignment explanation
Indices: 1682508--1682602 Score: 73
Period size: 3 Copynumber: 31.0 Consensus size: 3
1682498 AATTTTTTAT
* * * * * *
1682508 TAA TAA TAT TAG TAA TAAA TAA TAA TAT TAG TAA TTA TAA TTA TAA
1 TAA TAA TAA TAA TAA T-AA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * ** *
1682554 GAA TAA TATT TAA TAA TAA TAA TAA TAA TAA TTT TTA TAA TAA TAA
1 TAA TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1682600 TAA
1 TAA
1682603 ATAAATTAAT
Statistics
Matches: 72, Mismatches: 18, Indels: 4
0.77 0.19 0.04
Matches are distributed among these distances:
3 67 0.93
4 5 0.07
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.41
Consensus pattern (3 bp):
TAA
Found at i:1682567 original size:25 final size:25
Alignment explanation
Indices: 1682528--1682602 Score: 89
Period size: 25 Copynumber: 3.0 Consensus size: 25
1682518 AGTAATAAAT
* *
1682528 AATAATATTAGTAATTATAATTATAAG
1 AATAATATT--TAATAATAATAATAAG
*
1682555 AATAATATTTAATAATAATAATAAT
1 AATAATATTTAATAATAATAATAAG
*
1682580 AATAAT-TTTTATAATAATAATAA
1 AATAATATTTAATAATAATAATAA
1682603 ATAAATTAAT
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
24 16 0.36
25 19 0.43
27 9 0.20
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.41
Consensus pattern (25 bp):
AATAATATTTAATAATAATAATAAG
Done.