Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001992.1 Hibiscus syriacus cultivar Beakdansim tig00004073_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59747

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12078--12123
5
9.2
5
77
17
51
82
0
17
0
0.67
12072--12127
12
4.6
13
73
26
52
80
0
19
0
0.71
12059--12127
24
2.8
24
79
14
79
81
0
15
2
0.81
12071--12122
17
2.9
17
83
16
70
82
0
17
0
0.66
13189--13745
83
6.7
83
94
1
900
29
13
21
35
1.92
14476--15707
113
11.0
113
93
2
1844
36
14
18
30
1.91
15297--15357
17
3.4
17
67
20
52
52
4
21
21
1.65
15635--15690
17
3.2
17
68
26
53
48
8
25
17
1.76
15937--16016
3
26.3
3
87
2
70
45
0
0
55
0.99
15937--16024
12
7.4
12
81
5
90
45
0
0
54
0.99
15941--16005
18
3.6
18
85
0
94
47
0
0
52
1.00
16481--16518
5
7.4
5
88
5
58
81
2
15
0
0.80
17400--17458
27
2.2
26
84
6
73
42
1
0
55
1.09
21382--21642
130
2.0
130
95
0
468
36
6
16
40
1.75
22934--23587
242
2.7
243
88
3
955
35
12
22
30
1.90
22934--23587
81
8.1
81
87
2
933
35
12
22
30
1.90
41021--41065
22
2.0
22
82
0
54
28
4
17
48
1.66
46365--46562
70
2.8
70
86
1
281
30
15
22
31
1.95
46773--46898
49
2.6
49
100
0
252
33
16
11
38
1.84
47635--47769
51
2.6
51
78
3
128
39
14
14
32
1.85
49534--49617
23
3.7
23
75
20
70
39
7
1
52
1.37
49785--49828
14
3.4
13
90
9
72
45
0
0
54
0.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49785--49827
2
23.0
2
86
13
65
46
0
0
53
1.00
51895--51951
16
3.9
14
74
17
53
26
1
1
70
1.07
54447--54709
95
2.7
95
87
4
350
35
17
14
32
1.90
57758--57864
53
2.0
54
94
5
191
41
5
11
42
1.64
58117--58207
47
1.9
48
90
2
148
16
10
26
46
1.80
58113--58253
47
3.1
45
83
9
142
17
9
26
46
1.79
59265--59312
20
2.4
20
92
0
87
35
8
33
22
1.84

Tables:   1

The End!