Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01001994.1 Hibiscus syriacus cultivar Beakdansim tig00004084_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 67896
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Found at i:2728 original size:22 final size:22
Alignment explanation
Indices: 2670--2728 Score: 57
Period size: 22 Copynumber: 2.7 Consensus size: 22
2660 TTCAGCTGTT
* *
2670 ATAACTCCTGAAATTATATCAT
1 ATAACTCCTGAAATTAAATCAA
* *
2692 GTAAC-CCATGGAATTAAATCAA
1 ATAACTCC-TGAAATTAAATCAA
*
2714 ATAACTCCTGTAATT
1 ATAACTCCTGAAATT
2729 CCTGATATTA
Statistics
Matches: 29, Mismatches: 6, Indels: 4
0.74 0.15 0.10
Matches are distributed among these distances:
21 2 0.07
22 25 0.86
23 2 0.07
ACGTcount: A:0.41, C:0.19, G:0.08, T:0.32
Consensus pattern (22 bp):
ATAACTCCTGAAATTAAATCAA
Found at i:6301 original size:18 final size:19
Alignment explanation
Indices: 6267--6303 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
6257 CTCCTTAAAA
*
6267 ATTTTAAATTTTTTTATAT
1 ATTTTAAATTATTTTATAT
6286 ATTTTAAA-TATTTTATAT
1 ATTTTAAATTATTTTATAT
6304 TAAACATATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 9 0.53
19 8 0.47
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (19 bp):
ATTTTAAATTATTTTATAT
Found at i:17225 original size:23 final size:22
Alignment explanation
Indices: 17181--17227 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
17171 TAAAACATTA
*
17181 AATTATAAAGTACTAAACATAT
1 AATTATAAAGTACTAAAAATAT
* *
17203 AATTATAAATTAGTTAAAAATAT
1 AATTATAAAGTA-CTAAAAATAT
17226 AA
1 AA
17228 ATGTAATTTA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
22 11 0.52
23 10 0.48
ACGTcount: A:0.57, C:0.04, G:0.04, T:0.34
Consensus pattern (22 bp):
AATTATAAAGTACTAAAAATAT
Found at i:19065 original size:15 final size:16
Alignment explanation
Indices: 19045--19074 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
19035 TTAGTTAAAG
19045 TTAAAATTT-TAAATT
1 TTAAAATTTATAAATT
19060 TTAAAATTTATAAAT
1 TTAAAATTTATAAAT
19075 AAAATAATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (16 bp):
TTAAAATTTATAAATT
Found at i:27066 original size:24 final size:24
Alignment explanation
Indices: 27039--27167 Score: 100
Period size: 24 Copynumber: 5.4 Consensus size: 24
27029 TATATCAAAA
*
27039 ATCAAAACATAAAT-CAAGTCAAGT
1 ATCAAATCA-AAATCCAAGTCAAGT
* *
27063 ATCATATCAAAATCCAGGTCAAGT
1 ATCAAATCAAAATCCAAGTCAAGT
* *
27087 ATCAGATCAGAATCCAAGTCAAGT
1 ATCAAATCAAAATCCAAGTCAAGT
* * * * *
27111 ATCAGATCAGAATCTATGT-TAGAT
1 ATCAAATCAAAATCCAAGTCAAG-T
* * *
27135 ATCAGATCAGAATCCATGTCAAGT
1 ATCAAATCAAAATCCAAGTCAAGT
*
27159 ATCAGATCA
1 ATCAAATCA
27168 GAATTCAAAT
Statistics
Matches: 91, Mismatches: 11, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
23 6 0.07
24 83 0.91
25 2 0.02
ACGTcount: A:0.43, C:0.19, G:0.14, T:0.25
Consensus pattern (24 bp):
ATCAAATCAAAATCCAAGTCAAGT
Found at i:27168 original size:24 final size:24
Alignment explanation
Indices: 27056--27171 Score: 162
Period size: 24 Copynumber: 4.8 Consensus size: 24
27046 CATAAATCAA
* * *
27056 GTCAAGTATCATATCAAAATCCAG
1 GTCAAGTATCAGATCAGAATCCAT
*
27080 GTCAAGTATCAGATCAGAATCCAA
1 GTCAAGTATCAGATCAGAATCCAT
*
27104 GTCAAGTATCAGATCAGAATCTAT
1 GTCAAGTATCAGATCAGAATCCAT
*
27128 GT-TAGATATCAGATCAGAATCCAT
1 GTCAAG-TATCAGATCAGAATCCAT
27152 GTCAAGTATCAGATCAGAAT
1 GTCAAGTATCAGATCAGAAT
27172 TCAAATCGAA
Statistics
Matches: 82, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
23 2 0.02
24 78 0.95
25 2 0.02
ACGTcount: A:0.40, C:0.18, G:0.16, T:0.26
Consensus pattern (24 bp):
GTCAAGTATCAGATCAGAATCCAT
Found at i:28300 original size:18 final size:18
Alignment explanation
Indices: 28279--28314 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
28269 CTTCCATCTG
*
28279 ATCTTATTATTTAATTCA
1 ATCTTATCATTTAATTCA
*
28297 ATCTTATCATTTACTTCA
1 ATCTTATCATTTAATTCA
28315 GTCCTTTCAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.31, C:0.17, G:0.00, T:0.53
Consensus pattern (18 bp):
ATCTTATCATTTAATTCA
Found at i:29657 original size:13 final size:13
Alignment explanation
Indices: 29652--29687 Score: 72
Period size: 13 Copynumber: 2.8 Consensus size: 13
29642 GTCAACGGGT
29652 CGGGTCGGGTAAA
1 CGGGTCGGGTAAA
29665 CGGGTCGGGTAAA
1 CGGGTCGGGTAAA
29678 CGGGTCGGGT
1 CGGGTCGGGT
29688 CAGGTTGTGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.17, C:0.17, G:0.50, T:0.17
Consensus pattern (13 bp):
CGGGTCGGGTAAA
Found at i:29688 original size:18 final size:18
Alignment explanation
Indices: 29639--29674 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
29629 CAACAGTCAA
*
29639 CGGGTCAACGGGTCGGGT
1 CGGGTAAACGGGTCGGGT
29657 CGGGTAAACGGGTCGGGT
1 CGGGTAAACGGGTCGGGT
29675 AAACGGGTCG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.14, C:0.19, G:0.50, T:0.17
Consensus pattern (18 bp):
CGGGTAAACGGGTCGGGT
Found at i:31870 original size:24 final size:24
Alignment explanation
Indices: 31843--31894 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
31833 TATATCAAAA
31843 ATCAAAACATAAAT-CAGGTCAAGT
1 ATCAAAACA-AAATCCAGGTCAAGT
* *
31867 ATCATATCAAAATCCAGGTCAAGT
1 ATCAAAACAAAATCCAGGTCAAGT
31891 ATCA
1 ATCA
31895 GATCAGAATC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
23 4 0.16
24 21 0.84
ACGTcount: A:0.46, C:0.19, G:0.12, T:0.23
Consensus pattern (24 bp):
ATCAAAACAAAATCCAGGTCAAGT
Found at i:31948 original size:24 final size:24
Alignment explanation
Indices: 31860--31951 Score: 123
Period size: 24 Copynumber: 3.8 Consensus size: 24
31850 CATAAATCAG
* * *
31860 GTCAAGTATCATATCAAAATCCAG
1 GTCAAGTATCAGATCAGAATCCAT
*
31884 GTCAAGTATCAGATCAGAATCTAT
1 GTCAAGTATCAGATCAGAATCCAT
*
31908 GT-TAGATATCAGATCAGAATCCAT
1 GTCAAG-TATCAGATCAGAATCCAT
31932 GTCAAGTATCAGATCAGAAT
1 GTCAAGTATCAGATCAGAAT
31952 TCAAATCGAA
Statistics
Matches: 59, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
23 2 0.03
24 55 0.93
25 2 0.03
ACGTcount: A:0.39, C:0.17, G:0.16, T:0.27
Consensus pattern (24 bp):
GTCAAGTATCAGATCAGAATCCAT
Found at i:34425 original size:15 final size:15
Alignment explanation
Indices: 34405--34438 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
34395 GGTCAACGCC
*
34405 GGTCAACAGTTAACG
1 GGTCAACAGTCAACG
*
34420 GGTCAACGGTCAACG
1 GGTCAACAGTCAACG
34435 GGTC
1 GGTC
34439 GGGTCAACGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.26, C:0.24, G:0.32, T:0.18
Consensus pattern (15 bp):
GGTCAACAGTCAACG
Found at i:34445 original size:13 final size:13
Alignment explanation
Indices: 34427--34469 Score: 68
Period size: 13 Copynumber: 3.3 Consensus size: 13
34417 ACGGGTCAAC
34427 GGTCAACGGGTCG
1 GGTCAACGGGTCG
*
34440 GGTCAACGAGTCG
1 GGTCAACGGGTCG
*
34453 GGTAAACGGGTCG
1 GGTCAACGGGTCG
34466 GGTC
1 GGTC
34470 GGGTTGTGAC
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
13 26 1.00
ACGTcount: A:0.19, C:0.21, G:0.44, T:0.16
Consensus pattern (13 bp):
GGTCAACGGGTCG
Found at i:35704 original size:11 final size:10
Alignment explanation
Indices: 35683--35740 Score: 71
Period size: 10 Copynumber: 5.6 Consensus size: 10
35673 ATTTTTTTAA
*
35683 AAAAATAAAT
1 AAAAATGAAT
35693 AAAAATGCAAT
1 AAAAATG-AAT
35704 AAAAATGAATT
1 AAAAATGAA-T
35715 AAAAATGAAT
1 AAAAATGAAT
* *
35725 AAAATTCAAT
1 AAAAATGAAT
35735 AAAAAT
1 AAAAAT
35741 ATAATGTAAA
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
10 22 0.52
11 20 0.48
ACGTcount: A:0.69, C:0.03, G:0.05, T:0.22
Consensus pattern (10 bp):
AAAAATGAAT
Found at i:35708 original size:21 final size:20
Alignment explanation
Indices: 35683--35740 Score: 71
Period size: 21 Copynumber: 2.8 Consensus size: 20
35673 ATTTTTTTAA
35683 AAAAATAAATAAAAATGCAAT
1 AAAAATAAATAAAAATG-AAT
*
35704 AAAAATGAATTAAAAATGAAT
1 AAAAAT-AAATAAAAATGAAT
* *
35725 AAAATTCAATAAAAAT
1 AAAAATAAATAAAAAT
35741 ATAATGTAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
20 8 0.25
21 14 0.44
22 10 0.31
ACGTcount: A:0.69, C:0.03, G:0.05, T:0.22
Consensus pattern (20 bp):
AAAAATAAATAAAAATGAAT
Found at i:36451 original size:11 final size:10
Alignment explanation
Indices: 36420--36474 Score: 58
Period size: 10 Copynumber: 5.5 Consensus size: 10
36410 CTTTACATTA
36420 TATTTTTATT
1 TATTTTTATT
* *
36430 GAATTTTATT
1 TATTTTTATT
*
36440 TATTTTTAAT
1 TATTTTTATT
36450 T-TTTTTATT
1 TATTTTTATT
*
36459 ACATTTTTATT
1 -TATTTTTATT
36470 TATTT
1 TATTT
36475 AAAAAAAATG
Statistics
Matches: 35, Mismatches: 8, Indels: 4
0.74 0.17 0.09
Matches are distributed among these distances:
9 7 0.20
10 20 0.57
11 8 0.23
ACGTcount: A:0.24, C:0.02, G:0.02, T:0.73
Consensus pattern (10 bp):
TATTTTTATT
Found at i:40633 original size:40 final size:40
Alignment explanation
Indices: 40588--40690 Score: 172
Period size: 40 Copynumber: 2.6 Consensus size: 40
40578 GCGTTTATTT
40588 ATTAAATGAAC-AAGCATGAACAAGATTTTGCGTTCGTTTA
1 ATTAAATGAACGAA-CATGAACAAGATTTTGCGTTCGTTTA
40628 ATTAAATGAACGAACATGAACAAGATTTTGCGTTCGTTTA
1 ATTAAATGAACGAACATGAACAAGATTTTGCGTTCGTTTA
* *
40668 ATTAAACGAACGAACATAAACAA
1 ATTAAATGAACGAACATGAACAA
40691 AGGACACGTT
Statistics
Matches: 60, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
40 58 0.97
41 2 0.03
ACGTcount: A:0.43, C:0.14, G:0.16, T:0.28
Consensus pattern (40 bp):
ATTAAATGAACGAACATGAACAAGATTTTGCGTTCGTTTA
Found at i:40750 original size:14 final size:14
Alignment explanation
Indices: 40731--40764 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
40721 CGTTCGATTA
40731 TATGTTTGTTCATT
1 TATGTTTGTTCATT
*
40745 TATGTTTGTTTATT
1 TATGTTTGTTCATT
40759 TATGTT
1 TATGTT
40765 CGAACATAGG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.15, C:0.03, G:0.15, T:0.68
Consensus pattern (14 bp):
TATGTTTGTTCATT
Found at i:41046 original size:10 final size:10
Alignment explanation
Indices: 41031--41097 Score: 80
Period size: 10 Copynumber: 6.1 Consensus size: 10
41021 GTGTTTGTGT
41031 TGTTCGTTTA
1 TGTTCGTTTA
41041 TGTTCGTTTA
1 TGTTCGTTTA
41051 TTGTGTTCGTTTA
1 ---TGTTCGTTTA
41064 TGTTCGTTTA
1 TGTTCGTTTA
41074 TTGTGTTCGTTTA
1 ---TGTTCGTTTA
41087 TGTTCGTTTA
1 TGTTCGTTTA
41097 T
1 T
41098 TTATTAAATG
Statistics
Matches: 51, Mismatches: 0, Indels: 12
0.81 0.00 0.19
Matches are distributed among these distances:
10 31 0.61
13 20 0.39
ACGTcount: A:0.09, C:0.09, G:0.21, T:0.61
Consensus pattern (10 bp):
TGTTCGTTTA
Found at i:41049 original size:23 final size:23
Alignment explanation
Indices: 41031--41098 Score: 136
Period size: 23 Copynumber: 3.0 Consensus size: 23
41021 GTGTTTGTGT
41031 TGTTCGTTTATGTTCGTTTATTG
1 TGTTCGTTTATGTTCGTTTATTG
41054 TGTTCGTTTATGTTCGTTTATTG
1 TGTTCGTTTATGTTCGTTTATTG
41077 TGTTCGTTTATGTTCGTTTATT
1 TGTTCGTTTATGTTCGTTTATT
41099 TATTAAATGA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 45 1.00
ACGTcount: A:0.09, C:0.09, G:0.21, T:0.62
Consensus pattern (23 bp):
TGTTCGTTTATGTTCGTTTATTG
Found at i:41434 original size:20 final size:20
Alignment explanation
Indices: 41409--41462 Score: 65
Period size: 20 Copynumber: 2.7 Consensus size: 20
41399 TATTTTAATT
41409 TATATTATTAAAAAATTATC
1 TATATTATTAAAAAATTATC
** *
41429 TATATTTATT-AAATTTTATT
1 TATA-TTATTAAAAAATTATC
41449 TATATTATTAAAAA
1 TATATTATTAAAAA
41463 TATGTTGTAT
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
19 5 0.18
20 18 0.64
21 5 0.18
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (20 bp):
TATATTATTAAAAAATTATC
Found at i:47551 original size:32 final size:32
Alignment explanation
Indices: 47507--47572 Score: 123
Period size: 32 Copynumber: 2.1 Consensus size: 32
47497 CAGATTCTTA
*
47507 ATTTGTTGTAACCCCTTTCTGTTATATAGTTT
1 ATTTGTTATAACCCCTTTCTGTTATATAGTTT
47539 ATTTGTTATAACCCCTTTCTGTTATATAGTTT
1 ATTTGTTATAACCCCTTTCTGTTATATAGTTT
47571 AT
1 AT
47573 GACCATAGTT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.21, C:0.15, G:0.11, T:0.53
Consensus pattern (32 bp):
ATTTGTTATAACCCCTTTCTGTTATATAGTTT
Found at i:51656 original size:30 final size:30
Alignment explanation
Indices: 51620--51680 Score: 113
Period size: 30 Copynumber: 2.0 Consensus size: 30
51610 TCCGACATTC
51620 CGATCATTCCTCCCGGTGCTTGTTGTGTCA
1 CGATCATTCCTCCCGGTGCTTGTTGTGTCA
*
51650 CGATCATTCCTCTCGGTGCTTGTTGTGTCA
1 CGATCATTCCTCCCGGTGCTTGTTGTGTCA
51680 C
1 C
51681 TATCGGCGAT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.10, C:0.30, G:0.23, T:0.38
Consensus pattern (30 bp):
CGATCATTCCTCCCGGTGCTTGTTGTGTCA
Found at i:52500 original size:20 final size:20
Alignment explanation
Indices: 52477--52524 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 20
52467 GATATGATTT
52477 AAAAAAATTAAATATAAAAA
1 AAAAAAATTAAATATAAAAA
* *
52497 AAAAAATTTAAATATCAAAA
1 AAAAAAATTAAATATAAAAA
*
52517 CAAAAAAT
1 AAAAAAAT
52525 AATAGTTTAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.75, C:0.04, G:0.00, T:0.21
Consensus pattern (20 bp):
AAAAAAATTAAATATAAAAA
Found at i:52501 original size:19 final size:20
Alignment explanation
Indices: 52477--52524 Score: 71
Period size: 21 Copynumber: 2.4 Consensus size: 20
52467 GATATGATTT
52477 AAAAAAATTAAATAT-AAAA
1 AAAAAAATTAAATATCAAAA
52496 AAAAAAATTTAAATATCAAAA
1 AAAAAAA-TTAAATATCAAAA
*
52517 CAAAAAAT
1 AAAAAAAT
52525 AATAGTTTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
19 7 0.27
20 9 0.35
21 10 0.38
ACGTcount: A:0.75, C:0.04, G:0.00, T:0.21
Consensus pattern (20 bp):
AAAAAAATTAAATATCAAAA
Found at i:54578 original size:14 final size:14
Alignment explanation
Indices: 54559--54588 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
54549 TTTTTTTATC
*
54559 AAAATAAAATTTAA
1 AAAATAAAATATAA
54573 AAAATAAAATATAA
1 AAAATAAAATATAA
54587 AA
1 AA
54589 TCAACTTGAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (14 bp):
AAAATAAAATATAA
Found at i:55120 original size:23 final size:23
Alignment explanation
Indices: 55094--55143 Score: 73
Period size: 23 Copynumber: 2.2 Consensus size: 23
55084 TTCCCGAGAA
55094 TCGACGTTAGTATCGTAAAAGAT
1 TCGACGTTAGTATCGTAAAAGAT
** *
55117 TCGATTTTAGTATCGTGAAAGAT
1 TCGACGTTAGTATCGTAAAAGAT
55140 TCGA
1 TCGA
55144 TTTTAGGGTT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.32, C:0.12, G:0.22, T:0.34
Consensus pattern (23 bp):
TCGACGTTAGTATCGTAAAAGAT
Found at i:55144 original size:23 final size:23
Alignment explanation
Indices: 55100--55149 Score: 91
Period size: 23 Copynumber: 2.2 Consensus size: 23
55090 AGAATCGACG
55100 TTAGTATCGTAAAAGATTCGATT
1 TTAGTATCGTAAAAGATTCGATT
*
55123 TTAGTATCGTGAAAGATTCGATT
1 TTAGTATCGTAAAAGATTCGATT
55146 TTAG
1 TTAG
55150 GGTTTTCATA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.32, C:0.08, G:0.20, T:0.40
Consensus pattern (23 bp):
TTAGTATCGTAAAAGATTCGATT
Found at i:57783 original size:18 final size:18
Alignment explanation
Indices: 57762--57802 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
57752 TGAGCATGAT
57762 CGTGACCATGATAAAGAC
1 CGTGACCATGATAAAGAC
* * *
57780 CGTGACCGTGATAGAGAT
1 CGTGACCATGATAAAGAC
57798 CGTGA
1 CGTGA
57803 TCGTTATAGG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.32, C:0.20, G:0.29, T:0.20
Consensus pattern (18 bp):
CGTGACCATGATAAAGAC
Done.