Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001996.1 Hibiscus syriacus cultivar Beakdansim tig00004087_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60647

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7693--7786
2
47.0
2
100
0
188
50
0
0
50
1.00
10130--10156
2
13.5
2
100
0
54
51
0
0
48
1.00
10369--10484
24
4.8
24
82
6
128
42
16
16
25
1.88
10402--10502
48
2.1
48
81
7
116
42
17
14
24
1.88
11611--11645
18
2.0
18
88
5
54
25
20
0
54
1.45
12948--12972
13
1.9
13
100
0
50
12
24
48
16
1.79
13989--14014
12
2.2
12
100
0
52
23
7
23
46
1.78
14071--14096
2
13.0
2
100
0
52
50
0
0
50
1.00
15047--15093
16
3.1
15
79
8
51
23
2
6
68
1.24
18399--18472
19
3.7
19
81
13
85
25
32
18
22
1.97
20358--20397
21
1.9
21
89
0
62
52
7
10
30
1.62
24215--24314
23
4.6
21
77
18
82
27
25
16
32
1.96
24236--24338
21
4.7
23
77
10
99
24
27
15
33
1.95
24214--24338
44
2.8
43
82
9
146
25
27
15
32
1.95
24235--24335
23
4.6
21
80
11
75
24
25
16
32
1.96
25010--25056
21
2.2
21
85
7
60
27
40
0
31
1.57
26956--27005
24
2.1
24
85
7
66
26
2
12
60
1.43
30231--30283
23
2.3
23
81
9
56
18
3
1
75
1.05
33015--33047
16
2.1
16
88
11
50
18
6
0
75
1.00
34375--34429
21
2.6
21
88
0
74
27
23
27
21
1.99
37754--37787
9
3.9
9
84
7
52
61
2
0
35
1.11
37750--37788
17
2.4
17
95
4
71
61
5
0
33
1.18
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38174--38252
29
2.7
29
86
0
104
35
10
24
30
1.88
39907--40015
31
3.7
31
72
18
83
48
0
1
49
1.11
40046--40096
23
2.2
23
82
0
57
45
1
1
50
1.24
48323--48360
20
1.9
20
94
0
67
34
15
26
23
1.95
48716--48758
20
2.2
20
86
0
59
32
13
16
37
1.88

Tables:   1

The End!