genome.fa.s1997.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001997.1 Hibiscus syriacus cultivar Beakdansim tig00004088_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  112143

Tables:   1   

This is table  1  of  1  ( 99 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9693--9787	28	3.4	27	70	8	82	49	2	2	46	1.25
12367--12500	70	1.9	68	96	3	250	38	7	20	32	1.81
22292--22379	45	2.0	45	86	0	122	23	20	29	26	1.99
25442--25482	21	1.9	22	85	5	57	51	12	2	34	1.52
27463--27521	28	2.1	27	80	14	75	32	8	16	42	1.79
27466--27521	29	2.0	29	89	3	87	32	8	17	41	1.81
27821--27885	30	2.2	29	89	8	96	21	12	12	53	1.70
35396--35728	111	3.0	111	96	0	612	44	11	7	36	1.69
35792--35835	18	2.5	17	85	10	61	63	2	0	34	1.07
39056--39089	15	2.3	15	94	0	59	26	0	47	26	1.53
39327--39487	15	10.5	15	87	7	225	47	0	1	50	1.11
39467--40054	32	19.4	32	68	21	274	34	0	12	52	1.41
39490--39532	22	2.0	22	90	0	68	39	0	11	48	1.40
39467--40237	54	14.1	54	75	14	665	33	0	13	52	1.41
39544--39586	22	2.0	22	100	0	86	34	0	13	51	1.42
39607--39832	36	5.7	36	68	20	96	33	0	12	54	1.38
39467--39968	80	6.2	80	78	13	517	34	0	12	52	1.42
39566--40300	218	3.5	213	82	11	694	33	0	13	52	1.42
39902--39990	22	4.0	22	76	15	101	31	0	16	51	1.45
40081--40220	32	4.7	32	82	16	201	35	0	12	52	1.40
40105--40161	18	3.4	18	67	18	59	31	0	14	54	1.40
40146--40188	22	2.0	22	100	0	86	34	0	13	51	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40280--40322	22	2.0	22	100	0	86	39	0	9	51	1.34
39947--40332	54	7.0	54	66	20	208	34	0	12	52	1.40
40346--40402	30	1.9	30	92	0	96	45	7	7	40	1.58
42033--42075	7	6.0	7	83	5	59	44	37	0	18	1.50
42058--42097	21	1.9	21	84	0	53	50	30	0	20	1.49
46588--46619	16	2.0	16	93	0	55	46	9	0	43	1.35
46633--46665	3	11.0	3	100	0	66	66	0	0	33	0.92
47893--47920	4	7.0	4	100	0	56	75	0	0	25	0.81
53011--53065	26	2.2	25	87	9	76	7	10	3	78	1.08
53127--53162	18	1.9	19	88	5	56	69	0	0	30	0.89
53671--54277	22	27.6	22	85	1	698	42	0	10	47	1.38
54819--54873	24	2.3	24	90	0	83	58	20	14	7	1.60
55520--55566	13	3.5	13	77	13	51	55	2	2	40	1.24
56417--56458	15	2.9	14	89	7	57	0	21	2	76	0.90
56417--56458	20	2.1	20	86	8	59	0	21	2	76	0.90
57023--57090	3	22.7	3	96	0	127	64	0	1	33	1.02
57342--57607	114	2.3	113	91	4	412	30	19	10	38	1.86
57540--57672	65	2.0	65	95	0	239	32	18	11	37	1.87
57636--57680	23	1.9	23	82	13	56	15	26	6	51	1.68
57441--58141	178	3.9	178	98	0	1321	30	20	11	36	1.89
57718--57850	65	2.0	65	95	0	239	32	18	11	37	1.87
57814--57858	23	1.9	23	82	13	56	15	26	6	51	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57604--58366	291	2.6	288	74	11	855	30	20	12	36	1.90
57896--58028	65	2.0	65	95	0	239	30	19	12	37	1.88
57992--58036	23	1.9	23	82	13	56	15	26	6	51	1.68
57960--58531	113	5.1	113	87	4	812	29	20	13	37	1.91
57960--58538	228	2.6	225	90	3	887	29	20	13	37	1.91
59331--59744	83	5.0	83	97	0	758	34	22	14	28	1.93
60886--60927	10	4.3	10	87	6	68	0	9	0	90	0.45
60885--60939	8	6.4	8	83	12	65	0	14	0	85	0.60
60886--60939	9	5.9	9	81	12	65	0	12	0	87	0.56
60885--60939	17	3.2	16	82	14	65	0	14	0	85	0.60
60886--60936	18	2.7	19	90	9	86	0	11	0	88	0.52
72263--72309	13	3.5	13	77	13	51	55	2	2	40	1.24
73164--73205	15	2.8	15	89	7	59	0	19	2	78	0.86
73164--73205	20	2.1	20	86	8	59	0	19	2	78	0.86
73771--73826	3	18.7	3	96	0	103	64	0	1	33	1.04
79588--79648	29	2.1	30	84	3	79	62	8	14	14	1.54
80849--80873	8	3.1	8	100	0	50	0	12	0	88	0.53
81630--81869	40	5.6	41	74	16	177	22	20	34	23	1.97
81533--81887	134	2.7	134	86	4	463	23	19	32	24	1.98
81895--81976	28	2.9	28	85	10	98	45	13	15	25	1.83
82530--82590	31	1.9	31	84	15	81	40	11	14	32	1.82
82992--83082	28	3.2	27	80	13	103	48	14	7	29	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82795--83112	120	2.6	119	81	6	336	43	12	13	30	1.81
83309--83390	36	2.3	36	78	4	94	31	12	19	36	1.89
83309--83403	36	2.6	36	78	3	93	35	11	17	34	1.86
83244--83568	167	1.9	166	82	7	399	38	12	16	32	1.86
83493--83616	35	3.5	35	81	13	155	38	12	16	33	1.85
83493--83616	36	3.5	35	81	11	137	38	12	16	33	1.85
83902--84591	4	174.2	4	97	2	1322	25	0	24	50	1.50
93866--93947	29	2.8	29	92	0	137	26	26	25	20	1.99
94002--94058	28	2.0	28	96	0	105	24	21	35	19	1.96
94077--94181	29	3.6	29	89	2	149	16	31	30	21	1.95
94492--94542	26	2.0	26	88	3	77	45	11	35	7	1.70
94699--94787	41	2.2	41	78	8	92	42	1	10	46	1.45
94727--94858	45	3.0	45	80	14	134	40	0	12	47	1.41
94899--94975	34	2.3	33	81	14	88	40	0	12	46	1.42
95042--95072	15	2.1	14	94	5	53	38	0	6	54	1.26
97194--97226	17	1.9	17	93	0	57	45	12	6	36	1.66
97211--97279	22	3.0	22	73	19	77	47	7	4	40	1.51
97436--97475	14	2.9	14	88	3	55	47	5	2	45	1.38
97421--97908	26	19.7	25	76	14	317	44	9	2	43	1.50
97434--97908	12	37.1	13	69	18	213	44	9	2	43	1.50
97450--97966	124	4.2	124	95	1	898	44	9	2	43	1.49
97725--97927	97	2.1	95	83	9	259	43	11	2	42	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97494--97966	247	1.9	248	97	0	894	43	9	2	44	1.50
100795--100853	26	2.3	24	78	16	64	40	3	8	47	1.51
101591--101703	50	2.4	47	80	15	128	49	7	0	41	1.38
101663--101725	28	2.2	30	91	5	103	57	11	0	31	1.34
101667--101732	28	2.4	28	85	10	98	56	10	0	33	1.34
101702--101750	21	2.3	21	85	3	71	53	16	0	30	1.43
102311--102383	20	3.3	20	67	26	58	24	47	9	17	1.77
102291--102383	46	2.0	46	100	0	186	23	47	10	18	1.80
102443--102533	29	3.1	29	96	0	164	17	34	31	16	1.92
102682--102713	2	16.0	2	100	0	64	50	0	0	50	1.00
105252--105372	59	2.1	59	87	0	170	34	21	8	35	1.83

Tables:   1

The End!